Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47475 * 2 1 4 4 H 1.09002 * 109.47146 * 306.26476 * 3 2 1 5 5 C 1.53001 * 109.47329 * 186.26817 * 3 2 1 6 6 C 1.50700 * 109.47593 * 162.69096 * 5 3 2 7 7 O 1.21288 * 119.99580 * 351.28064 * 6 5 3 8 8 N 1.34773 * 120.00463 * 171.27870 * 6 5 3 9 9 C 1.46496 * 120.00184 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46910 * 90.00437 * 9 8 6 11 11 H 1.07999 * 120.00055 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99817 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00311 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99574 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46906 * 90.00372 * 14 12 10 16 16 H 1.48504 * 109.46827 * 209.99749 * 14 12 10 17 17 H 1.48495 * 109.47270 * 329.99784 * 14 12 10 18 18 C 1.46497 * 119.99697 * 0.02562 * 8 6 5 19 19 C 1.52998 * 109.47083 * 269.99606 * 18 8 6 20 20 C 1.53007 * 117.50310 * 243.62468 * 19 18 8 21 21 C 1.52997 * 59.99860 * 252.50781 * 20 19 18 22 22 C 1.53000 * 109.47327 * 66.26150 * 3 2 1 23 23 C 1.52998 * 109.46944 * 66.39756 * 22 3 2 24 24 C 1.53005 * 109.47198 * 186.39521 * 22 3 2 25 25 H 1.09000 * 109.46895 * 63.82119 * 1 2 3 26 26 H 1.09002 * 109.47575 * 183.81756 * 1 2 3 27 27 H 1.09006 * 109.47349 * 303.81959 * 1 2 3 28 28 H 1.09004 * 109.46664 * 239.99359 * 2 1 3 29 29 H 1.09001 * 109.46983 * 120.00100 * 2 1 3 30 30 H 1.08998 * 109.47148 * 42.68635 * 5 3 2 31 31 H 1.09007 * 109.46658 * 282.68721 * 5 3 2 32 32 H 1.08998 * 109.47336 * 330.00917 * 9 8 6 33 33 H 1.08996 * 109.47467 * 210.00308 * 9 8 6 34 34 H 0.97003 * 120.00340 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.47484 * 29.99448 * 18 8 6 36 36 H 1.09003 * 109.47525 * 149.99864 * 18 8 6 37 37 H 1.09002 * 115.55192 * 29.32799 * 19 18 8 38 38 H 1.09001 * 117.49214 * 359.97438 * 20 19 18 39 39 H 1.08996 * 117.49928 * 145.02001 * 20 19 18 40 40 H 1.09002 * 117.50025 * 252.50387 * 21 20 19 41 41 H 1.09001 * 117.50239 * 107.48579 * 21 20 19 42 42 H 1.09000 * 109.47128 * 306.39883 * 22 3 2 43 43 H 1.09003 * 109.47355 * 306.60293 * 23 22 3 44 44 H 1.09003 * 109.47607 * 66.59905 * 23 22 3 45 45 H 1.08996 * 109.47423 * 186.60245 * 23 22 3 46 46 H 1.08994 * 109.46657 * 53.00843 * 24 22 3 47 47 H 1.08996 * 109.46565 * 173.01244 * 24 22 3 48 48 H 1.09001 * 109.46813 * 293.00897 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5880 1.9876 -0.8286 5 6 3.5619 1.4452 -0.1575 6 6 4.0207 2.8171 -0.5800 7 8 3.2060 3.6594 -0.8925 8 7 5.3363 3.1079 -0.6107 9 6 5.7824 4.4413 -1.0220 10 6 5.8700 5.3368 0.1870 11 1 5.6189 4.9511 1.1640 12 6 6.2706 6.6485 0.0457 13 7 6.5757 7.1184 -1.1440 14 14 6.3784 7.7586 1.5442 15 1 7.7392 7.6664 2.1316 16 1 6.1073 9.1619 1.1412 17 1 5.3746 7.3300 2.5511 18 6 6.3204 2.0902 -0.2338 19 6 6.5969 2.1798 1.2683 20 6 8.0146 2.5550 1.7047 21 6 7.5141 1.1202 1.8823 22 6 1.6626 2.1168 1.3204 23 6 2.4229 1.4507 2.4689 24 6 2.0301 3.6008 1.2585 25 1 -0.3633 0.4534 -0.9223 26 1 -0.3634 -1.0254 0.0684 27 1 -0.3634 0.5720 0.8538 28 1 1.8932 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8501 0.7164 -0.9149 31 1 4.0260 1.1838 0.7936 32 1 5.0698 4.8596 -1.7330 33 1 6.7633 4.3677 -1.4914 34 1 6.8572 8.0413 -1.2435 35 1 5.9301 1.1011 -0.4730 36 1 7.2461 2.2584 -0.7842 37 1 5.7697 2.5436 1.8778 38 1 8.7504 2.7376 0.9215 39 1 8.1202 3.1658 2.6012 40 1 7.2904 0.7870 2.8958 41 1 7.9204 0.3592 1.2161 42 1 0.5903 2.0147 1.4871 43 1 2.2532 0.3743 2.4411 44 1 3.4889 1.6531 2.3647 45 1 2.0686 1.8500 3.4192 46 1 1.5874 4.0478 0.3684 47 1 1.6505 4.1064 2.1463 48 1 3.1143 3.7051 1.2166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104414221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -32.463379 kcal Electronic energy + Delta-G solvation = -24173.484830 eV Core-core repulsion = 21035.668908 eV Total energy + Delta-G solvation = -3137.815922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77234 -37.55948 -36.63754 -34.24253 -32.52102 -32.19516 -30.01738 -27.69275 -26.78567 -26.02655 -24.63920 -22.33542 -22.08285 -22.01462 -20.52168 -18.79207 -17.95522 -16.51303 -16.19640 -15.94259 -15.48697 -14.76479 -14.69869 -14.29208 -14.16491 -13.60153 -13.33437 -13.10584 -12.78301 -12.41931 -12.26633 -12.19126 -11.92248 -11.83077 -11.47353 -11.42219 -11.22169 -11.19163 -11.06798 -10.94218 -10.80365 -10.66337 -10.58571 -10.24148 -10.11263 -10.03125 -9.90922 -9.79020 -9.52461 -9.44087 -8.67134 -8.37154 -7.56172 -5.98060 -4.00563 3.32112 3.39069 3.42292 3.54190 3.96309 4.23802 4.49467 4.89419 4.92809 5.01448 5.11230 5.22765 5.28018 5.34314 5.36708 5.44316 5.52145 5.54245 5.69494 5.76948 5.79296 5.80487 5.85863 5.88623 5.94654 5.98304 6.03058 6.10023 6.11783 6.18939 6.24094 6.28477 6.41339 6.43316 6.44180 6.60144 6.64278 6.67088 6.84393 7.12124 7.17621 7.51183 7.66028 7.99161 8.31569 8.52487 8.98952 9.22514 9.63662 11.10336 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.006051 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.852260 B = 4626.213119 C = 5317.671236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.072 4.072 4 H 0.084 0.916 5 C -0.144 4.144 6 C 0.505 3.495 7 O -0.533 6.533 8 N -0.599 5.599 9 C 0.248 3.752 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.898 5.898 14 Si 0.891 3.109 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.147 3.853 19 C -0.153 4.153 20 C -0.164 4.164 21 C -0.191 4.191 22 C -0.088 4.088 23 C -0.152 4.152 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -15.877 4.551 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.091 4.091 4 H 0.102 0.898 5 C -0.184 4.184 6 C 0.293 3.707 7 O -0.411 6.411 8 N -0.330 5.330 9 C 0.128 3.872 10 C -0.549 4.549 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C 0.022 3.978 19 C -0.172 4.172 20 C -0.201 4.201 21 C -0.229 4.229 22 C -0.106 4.106 23 C -0.209 4.209 24 C -0.199 4.199 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.632 -15.234 4.264 16.483 hybrid contribution 0.343 0.776 0.982 1.298 sum -4.290 -14.458 5.246 15.967 Atomic orbital electron populations 1.21812 0.96129 1.00969 1.02056 1.21644 0.95806 0.96773 1.01614 1.21052 0.93855 0.95224 0.98926 0.89787 1.21938 0.97314 0.96190 1.02928 1.20272 0.82520 0.89313 0.78621 1.90664 1.52061 1.49833 1.48494 1.48212 1.04689 1.14732 1.65371 1.19243 0.95156 0.76748 0.96012 1.21378 1.44305 0.95329 0.93902 0.92493 1.24895 0.95621 0.97832 0.95760 1.69927 1.46250 1.15754 1.21811 0.86599 0.78153 0.80080 0.83207 1.20789 1.21254 1.19998 1.20968 0.93391 0.91209 0.92242 1.22754 0.94771 1.02588 0.97124 1.22872 0.97494 0.96445 1.03252 1.22965 1.05612 0.92716 1.01571 1.21130 0.99286 0.96280 0.93943 1.22000 1.00827 0.99962 0.98066 1.22125 1.03117 0.93928 1.00726 0.92818 0.93293 0.92428 0.92314 0.91916 0.90119 0.89072 0.94019 0.95480 0.92920 0.91487 0.90791 0.87936 0.88813 0.89285 0.89443 0.89215 0.91695 0.92858 0.92395 0.93299 0.91015 0.95078 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.78 37.16 0.36 -1.16 16 2 C -0.12 -1.31 5.27 -26.74 -0.14 -1.45 16 3 C -0.07 -0.99 1.64 -90.62 -0.15 -1.14 16 4 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 5 C -0.14 -2.10 3.49 -27.88 -0.10 -2.20 16 6 C 0.51 10.02 5.75 -10.99 -0.06 9.95 16 7 O -0.53 -12.56 11.63 5.55 0.06 -12.49 16 8 N -0.60 -12.26 2.46 -175.07 -0.43 -12.69 16 9 C 0.25 6.36 5.20 -5.19 -0.03 6.33 16 10 C -0.51 -14.10 9.39 -34.44 -0.32 -14.42 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 14 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 C 0.15 2.35 5.42 -4.04 -0.02 2.33 16 19 C -0.15 -2.37 5.65 -90.62 -0.51 -2.88 16 20 C -0.16 -2.46 10.18 -26.73 -0.27 -2.73 16 21 C -0.19 -2.34 10.25 -26.73 -0.27 -2.62 16 22 C -0.09 -1.25 2.59 -90.62 -0.23 -1.48 16 23 C -0.15 -1.91 8.41 37.16 0.31 -1.60 16 24 C -0.14 -2.57 7.46 37.16 0.28 -2.30 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 28 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 29 H 0.06 0.63 6.24 -51.93 -0.32 0.30 16 30 H 0.08 1.03 7.62 -51.93 -0.40 0.63 16 31 H 0.09 1.24 4.94 -51.92 -0.26 0.98 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.03 0.72 7.89 -51.93 -0.41 0.31 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.88 6.67 -51.93 -0.35 0.53 16 36 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 37 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.85 6.27 -51.93 -0.33 0.53 16 43 H 0.05 0.57 6.23 -51.93 -0.32 0.25 16 44 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.37 5.61 -51.93 -0.29 1.08 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -30.62 364.75 -9.02 -39.64 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.60 Total: 2.77 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.26 Total: -13.75 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.31 Total: -38.65 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.62 -9.02 -39.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104414221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds