Wall clock time and date at job start Tue Mar 31 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46501 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99553 * 90.82552 * 4 3 2 6 6 H 1.08006 * 119.99658 * 172.64996 * 5 4 3 7 7 C 1.38949 * 120.00224 * 352.65349 * 5 4 3 8 8 N 1.31412 * 120.00063 * 336.83051 * 7 5 4 9 9 Si 1.86803 * 119.99904 * 156.82593 * 7 5 4 10 10 H 1.48498 * 109.46968 * 89.99974 * 9 7 5 11 11 H 1.48501 * 109.47120 * 209.99836 * 9 7 5 12 12 H 1.48498 * 109.47255 * 330.00200 * 9 7 5 13 13 C 1.34779 * 120.00109 * 270.82608 * 4 3 2 14 14 O 1.21285 * 119.99842 * 2.90015 * 13 4 3 15 15 C 1.50698 * 119.99610 * 182.89686 * 13 4 3 16 16 H 1.09001 * 109.47559 * 331.65780 * 15 13 4 17 17 C 1.53002 * 109.46763 * 91.65802 * 15 13 4 18 18 C 1.53006 * 109.47001 * 211.65206 * 15 13 4 19 19 C 1.52991 * 109.46932 * 175.00047 * 18 15 13 20 20 C 1.53000 * 109.47137 * 175.00220 * 19 18 15 21 21 C 1.53002 * 109.47403 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47181 * 299.99940 * 21 20 19 23 23 C 1.52999 * 109.46911 * 60.00149 * 22 21 20 24 24 C 1.53002 * 109.47751 * 295.00307 * 19 18 15 25 25 H 1.09001 * 109.46552 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47279 * 299.99556 * 1 2 3 27 27 H 1.08996 * 109.47108 * 60.00014 * 1 2 3 28 28 H 1.08997 * 109.47279 * 240.00444 * 2 1 3 29 29 H 1.08997 * 109.47582 * 119.99746 * 2 1 3 30 30 H 1.09006 * 109.46905 * 60.00090 * 3 2 1 31 31 H 1.08995 * 109.47117 * 300.00666 * 3 2 1 32 32 H 0.97003 * 119.99605 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46859 * 174.33557 * 17 15 13 34 34 H 1.09000 * 109.47041 * 294.33210 * 17 15 13 35 35 H 1.08996 * 109.47286 * 54.34089 * 17 15 13 36 36 H 1.09002 * 109.46284 * 55.00448 * 18 15 13 37 37 H 1.08996 * 109.47319 * 295.00725 * 18 15 13 38 38 H 1.09000 * 109.47321 * 55.00621 * 19 18 15 39 39 H 1.09005 * 109.47148 * 60.00067 * 20 19 18 40 40 H 1.08999 * 109.47418 * 300.00479 * 20 19 18 41 41 H 1.09006 * 109.47091 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.46955 * 60.00231 * 21 20 19 43 43 H 1.09001 * 109.47122 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47272 * 300.00328 * 22 21 20 45 45 H 1.09001 * 109.47490 * 59.99200 * 23 22 21 46 46 H 1.08999 * 109.47470 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.46965 * 300.00532 * 24 19 18 48 48 H 1.09006 * 109.46823 * 60.00162 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.1909 1.4596 -1.1863 6 1 5.2642 1.5794 -1.1880 7 6 3.5051 1.3228 -2.3870 8 7 2.3279 0.7393 -2.4086 9 14 4.2567 1.9686 -3.9706 10 1 5.0737 0.9013 -4.6020 11 1 3.1743 2.3791 -4.9008 12 1 5.1195 3.1387 -3.6679 13 6 4.1784 1.4261 1.1680 14 8 3.5727 1.3579 2.2165 15 6 5.6839 1.4921 1.1703 16 1 6.0682 1.0568 0.2478 17 6 6.1301 2.9522 1.2697 18 6 6.2269 0.7102 2.3682 19 6 7.7549 0.6718 2.3018 20 6 8.3033 -0.0008 3.5619 21 6 9.8314 -0.0387 3.4959 22 6 10.2692 -0.8317 2.2628 23 6 9.7208 -0.1590 1.0028 24 6 8.1922 -0.1215 1.0688 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 1.8494 0.6435 -3.2470 33 1 7.2145 2.9945 1.3727 34 1 5.8297 3.4861 0.3682 35 1 5.6643 3.4161 2.1391 36 1 5.8365 -0.3072 2.3449 37 1 5.9154 1.1979 3.2918 38 1 8.1414 1.6888 2.2354 39 1 7.9168 -1.0179 3.6283 40 1 7.9918 0.5643 4.4403 41 1 10.2221 -0.5183 4.3934 42 1 10.2175 0.9784 3.4297 43 1 11.3578 -0.8583 2.2156 44 1 9.8830 -1.8489 2.3290 45 1 10.1068 0.8582 0.9366 46 1 10.0323 -0.7241 0.1243 47 1 7.8057 -1.1385 1.1352 48 1 7.8015 0.3578 0.1711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114319647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:26 Heat of formation + Delta-G solvation = -70.584186 kcal Electronic energy + Delta-G solvation = -23696.648234 eV Core-core repulsion = 20557.179270 eV Total energy + Delta-G solvation = -3139.468964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.25125 -38.19152 -35.36738 -34.04141 -32.16847 -31.41265 -30.67382 -30.10489 -25.90105 -25.84300 -24.63864 -22.81254 -22.29582 -20.74555 -19.95966 -19.36080 -18.77126 -16.63456 -16.25048 -15.19815 -14.62013 -14.42173 -14.24234 -14.00405 -13.87719 -13.80238 -13.46676 -12.98801 -12.80245 -12.61221 -12.15566 -12.04777 -11.93420 -11.62330 -11.46174 -11.32664 -11.28724 -10.99236 -10.93200 -10.88765 -10.68016 -10.54730 -10.40842 -10.39768 -10.21544 -10.05453 -10.02787 -9.76163 -9.54306 -9.40089 -8.78327 -8.16735 -7.70818 -6.30953 -3.81691 3.09717 3.21386 3.24574 3.96158 4.09410 4.70237 4.83103 4.88001 4.97517 5.05744 5.32016 5.33762 5.53374 5.60443 5.62882 5.65332 5.74166 5.83661 5.88119 5.95459 6.07131 6.09008 6.17571 6.18984 6.23593 6.26974 6.28746 6.32941 6.36331 6.48210 6.49791 6.52618 6.56055 6.60842 6.69162 6.80571 6.93808 6.96516 7.01249 7.06784 7.15429 7.38910 7.53406 7.79053 7.94579 8.50430 9.12285 9.61911 10.02683 10.62750 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005159 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.536718 B = 5426.548140 C = 6389.711720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.144 3.856 4 N -0.442 5.442 5 C -0.333 4.333 6 H 0.101 0.899 7 C 0.036 3.964 8 N -0.854 5.854 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.458 3.542 14 O -0.613 6.613 15 C -0.098 4.098 16 H 0.091 0.909 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 -0.789 4.098 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.021 3.979 4 N -0.159 5.159 5 C -0.460 4.460 6 H 0.118 0.882 7 C -0.168 4.168 8 N -0.492 5.492 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.246 3.754 14 O -0.500 6.500 15 C -0.119 4.119 16 H 0.109 0.891 17 C -0.193 4.193 18 C -0.129 4.129 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.155 4.155 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.896 -0.861 4.423 10.874 hybrid contribution 0.237 0.214 -1.014 1.063 sum 10.134 -0.647 3.409 10.711 Atomic orbital electron populations 1.21577 0.97908 0.99600 1.00147 1.21912 0.93475 0.98514 1.02135 1.21189 0.80182 0.96922 0.99613 1.43854 1.05484 1.61705 1.04821 1.19662 0.93300 1.50294 0.82767 0.88175 1.25164 0.96299 0.96187 0.99193 1.70163 1.14742 1.37314 1.27009 0.86200 0.78794 0.79597 0.81716 1.20492 1.20792 1.19530 1.20054 0.89155 0.82509 0.83650 1.90499 1.70266 1.57390 1.31879 1.21096 0.94111 0.96840 0.99875 0.89066 1.21679 1.00092 0.95511 1.02008 1.21386 0.93027 1.00245 0.98237 1.21231 0.95705 0.99272 0.94333 1.21581 0.94737 1.00957 0.97872 1.21528 0.96338 1.00182 0.97501 1.21536 0.99590 0.99405 0.95111 1.21547 0.96356 1.00517 0.97210 1.21670 0.94694 1.00642 0.98530 0.94431 0.94709 0.93085 0.87601 0.95390 0.94743 0.89482 0.92297 0.92727 0.92271 0.93037 0.92359 0.91666 0.91105 0.92156 0.92214 0.92571 0.92252 0.92664 0.92198 0.92254 0.92388 0.92101 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.91 37.16 0.37 -2.29 16 2 C -0.12 -2.87 5.67 -26.73 -0.15 -3.03 16 3 C 0.14 3.58 4.59 -4.04 -0.02 3.56 16 4 N -0.44 -11.18 2.62 -114.81 -0.30 -11.48 16 5 C -0.33 -8.23 9.18 -14.93 -0.14 -8.37 16 6 H 0.10 2.34 5.86 -52.48 -0.31 2.04 16 7 C 0.04 0.87 4.97 -17.47 -0.09 0.78 16 8 N -0.85 -21.16 8.07 55.50 0.45 -20.71 16 9 Si 0.91 18.98 29.61 -169.99 -5.03 13.94 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 13 C 0.46 11.19 6.67 -10.99 -0.07 11.12 16 14 O -0.61 -16.59 15.93 5.55 0.09 -16.50 16 15 C -0.10 -1.92 1.92 -91.77 -0.18 -2.10 16 16 H 0.09 1.80 4.27 -51.93 -0.22 1.58 16 17 C -0.14 -2.35 9.06 37.16 0.34 -2.02 16 18 C -0.09 -1.58 3.68 -26.73 -0.10 -1.68 16 19 C -0.09 -1.20 2.06 -90.62 -0.19 -1.39 16 20 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 22 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.34 5.92 -26.70 -0.16 -1.50 16 24 C -0.12 -1.59 4.97 -26.70 -0.13 -1.72 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.11 2.69 5.88 -51.93 -0.31 2.39 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.87 7.49 -51.93 -0.39 0.48 16 31 H 0.09 2.22 6.09 -51.93 -0.32 1.91 16 32 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 33 H 0.05 0.79 6.22 -51.93 -0.32 0.47 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.19 8.02 -51.93 -0.42 0.78 16 38 H 0.07 0.95 6.24 -51.93 -0.32 0.63 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -27.15 358.31 -9.21 -36.36 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.84 Total: 5.92 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.97 Total: -12.93 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.15 Total: -32.19 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.15 -9.21 -36.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114319647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.223 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds