Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46999 * 2 1 4 4 N 1.46502 * 109.46756 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00188 * 264.66883 * 4 3 2 6 6 H 1.08003 * 120.00406 * 150.57554 * 5 4 3 7 7 C 1.38814 * 120.00126 * 330.57880 * 5 4 3 8 8 N 1.31612 * 120.00126 * 332.51807 * 7 5 4 9 9 Si 1.86801 * 120.00073 * 152.51431 * 7 5 4 10 10 H 1.48497 * 109.47299 * 84.99998 * 9 7 5 11 11 H 1.48504 * 109.47364 * 205.00509 * 9 7 5 12 12 H 1.48509 * 109.47160 * 324.99732 * 9 7 5 13 13 C 1.46504 * 119.99929 * 84.67926 * 4 3 2 14 14 H 1.08997 * 112.87473 * 348.68071 * 13 4 3 15 15 C 1.53922 * 113.64848 * 217.25895 * 13 4 3 16 16 C 1.53916 * 87.22394 * 220.64440 * 15 13 4 17 17 H 1.09004 * 113.65024 * 270.37223 * 16 15 13 18 18 O 1.42894 * 113.73578 * 139.36155 * 16 15 13 19 19 C 1.42898 * 114.00213 * 112.70035 * 18 16 15 20 20 C 1.53000 * 109.47500 * 180.02562 * 19 18 16 21 21 C 1.53015 * 113.65408 * 119.99845 * 13 4 3 22 22 C 1.53564 * 115.12860 * 22.65081 * 21 13 4 23 23 C 1.55062 * 103.98340 * 206.87877 * 22 21 13 24 24 C 1.54950 * 102.86176 * 37.29595 * 23 22 21 25 25 C 1.53166 * 115.37140 * 256.64440 * 21 13 4 26 26 H 1.09000 * 109.47208 * 60.00128 * 1 2 3 27 27 H 1.09008 * 109.47154 * 300.00141 * 1 2 3 28 28 H 1.09003 * 109.47579 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46732 * 120.00107 * 2 1 3 30 30 H 1.08995 * 109.47308 * 239.99602 * 2 1 3 31 31 H 1.08999 * 109.47466 * 299.99658 * 3 2 1 32 32 H 1.08999 * 109.47570 * 60.00417 * 3 2 1 33 33 H 0.96996 * 120.00510 * 180.02562 * 8 7 5 34 34 H 1.08998 * 113.59354 * 335.23323 * 15 13 4 35 35 H 1.09004 * 113.59280 * 106.05899 * 15 13 4 36 36 H 1.09004 * 109.47000 * 300.00018 * 19 18 16 37 37 H 1.09000 * 109.47304 * 59.99924 * 19 18 16 38 38 H 1.09000 * 109.47202 * 300.00374 * 20 19 18 39 39 H 1.09000 * 109.46999 * 59.99622 * 20 19 18 40 40 H 1.08994 * 109.47215 * 180.02562 * 20 19 18 41 41 H 1.08998 * 110.52600 * 325.50437 * 22 21 13 42 42 H 1.09005 * 110.52397 * 88.25395 * 22 21 13 43 43 H 1.09005 * 110.73226 * 278.95133 * 23 22 21 44 44 H 1.09005 * 110.73285 * 155.64179 * 23 22 21 45 45 H 1.08996 * 110.47953 * 203.76521 * 24 23 22 46 46 H 1.08999 * 110.47721 * 81.13898 * 24 23 22 47 47 H 1.09000 * 110.09635 * 248.85486 * 25 21 13 48 48 H 1.09005 * 110.09266 * 10.38390 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5527 1.1816 6 1 5.1647 1.1008 1.2849 7 6 3.6290 2.2454 2.2462 8 7 2.7683 3.2151 2.0205 9 14 4.0968 1.8011 3.9993 10 1 5.3431 2.5154 4.3753 11 1 3.0014 2.1986 4.9198 12 1 4.3175 0.3357 4.0965 13 6 4.2380 1.3245 -1.2624 14 1 3.5974 1.0485 -2.0999 15 6 5.5185 0.4770 -1.1563 16 6 6.1936 1.5185 -2.0664 17 1 6.1011 1.2958 -3.1294 18 8 7.5317 1.8385 -1.6803 19 6 8.5247 1.4071 -2.6129 20 6 9.9115 1.8000 -2.0997 21 6 5.1520 2.5162 -1.5552 22 6 5.5778 3.3295 -0.3242 23 6 5.8474 4.7487 -0.8876 24 6 4.7423 4.9090 -1.9619 25 6 4.6254 3.5064 -2.5984 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.3771 3.6994 2.7643 34 1 5.9358 0.4411 -0.1500 35 1 5.4284 -0.5086 -1.6132 36 1 8.4724 0.3240 -2.7244 37 1 8.3466 1.8806 -3.5784 38 1 9.9642 2.8829 -1.9879 39 1 10.0893 1.3261 -1.1344 40 1 10.6688 1.4713 -2.8113 41 1 4.7748 3.3568 0.4123 42 1 6.4852 2.9133 0.1136 43 1 6.8372 4.8023 -1.3411 44 1 5.7383 5.5012 -0.1064 45 1 5.0411 5.6435 -2.7097 46 1 3.7989 5.1974 -1.4984 47 1 5.2307 3.4542 -3.5034 48 1 3.5837 3.2858 -2.8318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121046063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -17.021638 kcal Electronic energy + Delta-G solvation = -24580.431277 eV Core-core repulsion = 21443.284960 eV Total energy + Delta-G solvation = -3137.146318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89090 -36.74567 -35.42219 -33.71806 -32.34668 -30.86930 -29.81556 -27.87920 -25.95674 -25.51297 -24.35683 -22.60780 -21.87623 -20.69080 -20.05061 -19.68796 -17.76617 -16.25190 -16.13043 -15.39926 -15.04648 -14.82627 -14.22551 -14.05989 -13.96612 -13.19985 -13.02319 -12.82266 -12.64848 -12.38555 -12.28725 -12.18095 -11.62103 -11.49116 -11.24457 -11.15421 -10.85362 -10.83830 -10.73201 -10.50103 -10.35999 -10.32964 -10.14954 -9.94560 -9.89062 -9.74629 -9.59179 -9.54390 -9.30183 -9.12412 -8.65630 -8.18099 -6.56530 -5.75646 -3.16495 3.40845 3.48928 3.52707 4.14198 4.55208 5.14324 5.24177 5.25130 5.33633 5.43167 5.45574 5.53384 5.54688 5.70311 5.73562 5.81405 5.85569 5.87528 5.94674 6.06199 6.09491 6.15310 6.23241 6.24511 6.34122 6.38793 6.49204 6.55645 6.57532 6.61701 6.63956 6.68423 6.82205 6.89997 6.94168 6.95497 7.03580 7.19132 7.25667 7.33260 7.49380 7.81535 7.86049 7.91465 8.15777 8.51572 9.25232 9.89283 10.42431 11.24225 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.006770 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.070540 B = 4134.797729 C = 4534.933705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.142 3.858 4 N -0.565 5.565 5 C -0.239 4.239 6 H 0.068 0.932 7 C 0.004 3.996 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.166 3.834 14 H 0.070 0.930 15 C -0.166 4.166 16 C 0.066 3.934 17 H 0.069 0.931 18 O -0.364 6.364 19 C 0.056 3.944 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.095 4.095 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.103 4.103 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.103 0.897 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -2.078 -9.033 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.016 3.984 4 N -0.282 5.282 5 C -0.368 4.368 6 H 0.086 0.914 7 C -0.195 4.195 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.056 3.944 14 H 0.088 0.912 15 C -0.205 4.205 16 C 0.008 3.992 17 H 0.087 0.913 18 O -0.282 6.282 19 C -0.021 4.021 20 C -0.207 4.207 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.141 4.141 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.584 -1.860 -8.725 10.030 hybrid contribution 0.273 -0.405 0.460 0.671 sum 4.858 -2.265 -8.265 9.850 Atomic orbital electron populations 1.21694 0.97656 0.99824 1.01064 1.22116 0.93588 1.01805 1.00507 1.21074 0.83226 0.92126 1.02015 1.43836 1.00807 1.82756 1.00800 1.18903 1.02815 1.26769 0.88332 0.91410 1.24819 1.00500 0.95784 0.98379 1.70037 1.33018 1.19221 1.30306 0.86576 0.77585 0.78591 0.85769 1.21349 1.21712 1.20708 1.21451 0.90284 0.92997 0.89624 0.91206 1.23950 0.99074 0.96332 1.01154 1.23640 0.81124 0.98133 0.96289 0.91337 1.88017 1.14616 1.79991 1.45617 1.22380 0.89478 0.97754 0.92483 1.21717 0.94774 1.02435 1.01737 1.22943 0.94645 0.95206 0.96144 1.22329 1.03325 0.90363 0.97150 1.22510 0.96786 0.99406 0.97256 1.22275 0.99566 0.95995 0.97523 1.21980 0.99768 0.95296 0.97066 0.93702 0.93098 0.94293 0.92560 0.94303 0.96385 0.87904 0.93645 0.88419 0.93394 0.94177 0.94284 0.92049 0.91968 0.91859 0.84328 0.92879 0.93525 0.93002 0.93709 0.91771 0.93581 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.03 16 2 C -0.14 -2.74 6.26 -26.73 -0.17 -2.91 16 3 C 0.14 3.17 5.27 -4.04 -0.02 3.15 16 4 N -0.57 -13.01 2.45 -165.11 -0.41 -13.42 16 5 C -0.24 -6.01 5.68 -15.06 -0.09 -6.09 16 6 H 0.07 1.76 6.04 -52.48 -0.32 1.44 16 7 C 0.00 0.11 4.30 -17.43 -0.08 0.04 16 8 N -0.88 -23.79 11.09 55.49 0.62 -23.17 16 9 Si 0.89 21.10 29.63 -169.99 -5.04 16.06 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.17 3.35 3.93 -67.44 -0.26 3.09 16 14 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 15 C -0.17 -3.15 7.21 -25.78 -0.19 -3.33 16 16 C 0.07 1.16 3.71 -26.24 -0.10 1.07 16 17 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 18 O -0.36 -6.46 9.00 -35.23 -0.32 -6.78 16 19 C 0.06 0.77 6.50 37.16 0.24 1.01 16 20 C -0.15 -1.77 10.28 37.16 0.38 -1.38 16 21 C -0.09 -1.67 1.09 -154.11 -0.17 -1.84 16 22 C -0.09 -2.06 4.47 -25.35 -0.11 -2.18 16 23 C -0.12 -2.36 6.91 -24.61 -0.17 -2.53 16 24 C -0.12 -2.09 6.85 -24.93 -0.17 -2.26 16 25 C -0.10 -1.84 6.33 -25.88 -0.16 -2.00 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.10 2.61 5.22 -51.93 -0.27 2.34 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.10 2.10 5.99 -51.93 -0.31 1.79 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.14 3.52 4.46 -51.93 -0.23 3.29 16 42 H 0.05 1.22 7.08 -51.93 -0.37 0.85 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 48 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -26.06 361.23 -9.43 -35.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -9.04 Total: 4.56 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.69 Total: -18.20 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.21 Total: -36.59 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.32 Total: -6.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.04 Total: 16.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.06 -9.43 -35.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121046063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.473 kcal (2) G-P(sol) polarization free energy of solvation -26.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds