Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46989 * 2 1 4 4 N 1.46499 * 109.46853 * 184.91257 * 3 2 1 5 5 C 1.36942 * 119.99910 * 94.00580 * 4 3 2 6 6 H 1.07997 * 120.00373 * 227.36754 * 5 4 3 7 7 C 1.38814 * 119.99654 * 47.37210 * 5 4 3 8 8 N 1.31624 * 119.99720 * 206.38656 * 7 5 4 9 9 Si 1.86797 * 120.00290 * 26.37873 * 7 5 4 10 10 H 1.48511 * 109.46783 * 84.21955 * 9 7 5 11 11 H 1.48497 * 109.47457 * 324.22169 * 9 7 5 12 12 H 1.48499 * 109.47575 * 204.21684 * 9 7 5 13 13 C 1.46496 * 120.00232 * 274.00749 * 4 3 2 14 14 H 1.08996 * 112.87903 * 40.66075 * 13 4 3 15 15 C 1.53921 * 113.65135 * 171.96821 * 13 4 3 16 16 C 1.53925 * 87.22206 * 139.35278 * 15 13 4 17 17 H 1.08994 * 113.65294 * 220.55437 * 16 15 13 18 18 O 1.42904 * 113.64757 * 89.62704 * 16 15 13 19 19 C 1.42895 * 113.99908 * 109.50711 * 18 16 15 20 20 C 1.53003 * 109.47091 * 179.97438 * 19 18 16 21 21 C 1.53012 * 113.64996 * 269.34639 * 13 4 3 22 22 C 1.53568 * 115.13329 * 103.66825 * 21 13 4 23 23 C 1.55074 * 103.98374 * 206.85345 * 22 21 13 24 24 C 1.54949 * 102.85641 * 37.30352 * 23 22 21 25 25 C 1.53172 * 115.37661 * 337.65605 * 21 13 4 26 26 H 1.08995 * 109.47475 * 304.90942 * 1 2 3 27 27 H 1.08998 * 109.46743 * 64.91334 * 1 2 3 28 28 H 1.09000 * 109.47119 * 184.91032 * 1 2 3 29 29 H 1.08997 * 109.46956 * 239.99751 * 2 1 3 30 30 H 1.09001 * 109.46559 * 120.00204 * 2 1 3 31 31 H 1.08997 * 109.47071 * 64.91285 * 3 2 1 32 32 H 1.08997 * 109.46733 * 304.91134 * 3 2 1 33 33 H 0.96996 * 119.99728 * 180.02562 * 8 7 5 34 34 H 1.08996 * 113.59244 * 253.93829 * 15 13 4 35 35 H 1.08996 * 113.59002 * 24.69094 * 15 13 4 36 36 H 1.09004 * 109.47396 * 299.99594 * 19 18 16 37 37 H 1.09002 * 109.47354 * 59.99408 * 19 18 16 38 38 H 1.08997 * 109.46732 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.47149 * 300.00261 * 20 19 18 40 40 H 1.09000 * 109.46663 * 60.00278 * 20 19 18 41 41 H 1.09002 * 110.52664 * 325.47277 * 22 21 13 42 42 H 1.09000 * 110.53020 * 88.22790 * 22 21 13 43 43 H 1.08997 * 110.73360 * 278.96165 * 23 22 21 44 44 H 1.09000 * 110.88801 * 155.71562 * 23 22 21 45 45 H 1.08996 * 110.48018 * 203.76761 * 24 23 22 46 46 H 1.09002 * 110.48061 * 81.14027 * 24 23 22 47 47 H 1.08998 * 110.09131 * 248.87209 * 25 21 13 48 48 H 1.08996 * 110.09108 * 10.46608 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1183 5 6 4.0873 1.5615 -1.3499 6 1 4.8863 0.8926 -1.6333 7 6 3.6552 2.5405 -2.2342 8 7 3.8002 2.3664 -3.5308 9 14 2.8679 4.1047 -1.5841 10 1 3.9285 5.0787 -1.2209 11 1 2.0548 3.7874 -0.3827 12 1 1.9946 4.6919 -2.6319 13 6 4.3324 1.3203 1.0810 14 1 3.9418 0.5951 1.7947 15 6 5.8308 1.1420 0.7771 16 6 6.1062 2.0960 1.9532 17 1 6.9083 2.8082 1.7600 18 8 6.2448 1.4308 3.2104 19 6 7.5779 1.4321 3.7248 20 6 7.6075 0.6976 5.0667 21 6 4.7038 2.6639 1.7119 22 6 3.9194 3.0275 2.9810 23 6 3.9381 4.5780 3.0017 24 6 3.8018 4.9445 1.5024 25 6 4.6383 3.8711 0.7714 26 1 -0.3634 0.5881 0.8427 27 1 -0.3633 0.4357 -0.9307 28 1 -0.3633 -1.0239 0.0880 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.7503 1.9303 0.9307 32 1 1.6066 1.9810 -0.8427 33 1 3.4987 3.0506 -4.1487 34 1 6.1921 0.1274 0.9445 35 1 6.1303 1.5433 -0.1911 36 1 8.2399 0.9288 3.0200 37 1 7.9118 2.4601 3.8662 38 1 8.6245 0.6982 5.4588 39 1 6.9457 1.2012 5.7712 40 1 7.2736 -0.3304 4.9255 41 1 2.8958 2.6586 2.9165 42 1 4.4159 2.6275 3.8651 43 1 4.8810 4.9472 3.4051 44 1 3.0961 4.9692 3.5728 45 1 4.2082 5.9382 1.3142 46 1 2.7586 4.8928 1.1905 47 1 5.6421 4.2481 0.5755 48 1 4.1536 3.5913 -0.1638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121046201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -3.312622 kcal Electronic energy + Delta-G solvation = -24765.908305 eV Core-core repulsion = 21629.356455 eV Total energy + Delta-G solvation = -3136.551850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15158 -36.98787 -35.64902 -33.90100 -32.45065 -31.07042 -30.18938 -28.34113 -26.36140 -25.46891 -24.68469 -22.76491 -21.92147 -20.77944 -20.53364 -19.98498 -18.04756 -16.41833 -16.04957 -15.83344 -15.54354 -15.21057 -14.50588 -14.24543 -13.91819 -13.41846 -13.24929 -12.87895 -12.85687 -12.64225 -12.48501 -12.41855 -11.99278 -11.76839 -11.47286 -11.33407 -11.08778 -11.00537 -10.82128 -10.77952 -10.56400 -10.47791 -10.38404 -10.13642 -9.97453 -9.86966 -9.67619 -9.52082 -9.29536 -9.01346 -8.85573 -8.45126 -6.53344 -6.03703 -3.49449 3.36569 3.50033 3.52061 3.86096 4.50313 4.97230 5.04297 5.09499 5.15030 5.20093 5.29120 5.38359 5.43677 5.47932 5.59155 5.65291 5.73795 5.76567 5.78842 5.88549 5.94419 6.00863 6.05276 6.07581 6.11102 6.12850 6.24610 6.30294 6.32058 6.40754 6.44062 6.51329 6.61362 6.64681 6.67311 6.76201 6.78747 6.87898 7.02510 7.06869 7.11077 7.17737 7.22298 7.67582 8.10300 8.51134 9.07918 9.71436 10.23341 11.09786 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.007117 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.005744 B = 3933.399050 C = 4257.831528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.150 3.850 4 N -0.590 5.590 5 C -0.270 4.270 6 H 0.073 0.927 7 C 0.043 3.957 8 N -0.889 5.889 9 Si 0.866 3.134 10 H -0.281 1.281 11 H -0.258 1.258 12 H -0.315 1.315 13 C 0.171 3.829 14 H 0.069 0.931 15 C -0.150 4.150 16 C 0.070 3.930 17 H 0.063 0.937 18 O -0.365 6.365 19 C 0.058 3.942 20 C -0.149 4.149 21 C -0.097 4.097 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.105 4.105 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 0.398 13.662 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.311 5.311 5 C -0.398 4.398 6 H 0.091 0.909 7 C -0.158 4.158 8 N -0.528 5.528 9 Si 0.697 3.303 10 H -0.209 1.209 11 H -0.184 1.184 12 H -0.245 1.245 13 C 0.064 3.936 14 H 0.086 0.914 15 C -0.188 4.188 16 C 0.012 3.988 17 H 0.081 0.919 18 O -0.284 6.284 19 C -0.019 4.019 20 C -0.206 4.206 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.158 4.158 24 C -0.168 4.168 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.495 0.346 13.553 13.785 hybrid contribution -0.129 1.148 0.047 1.156 sum 2.367 1.494 13.600 13.885 Atomic orbital electron populations 1.21732 0.97460 1.00313 1.01061 1.22081 0.93784 1.00759 1.01520 1.21202 0.84526 0.93299 0.98564 1.44071 0.99865 1.84651 1.02472 1.18538 1.19953 1.12310 0.89015 0.90923 1.25850 0.97184 0.97789 0.95025 1.69941 1.47442 1.33967 1.01421 0.87503 0.78951 0.86004 0.77816 1.20873 1.18352 1.24479 1.21756 0.90406 0.92685 0.88782 0.91359 1.23775 0.97656 0.98823 0.98594 1.23118 0.97284 0.94747 0.83632 0.91862 1.87837 1.27075 1.77335 1.36191 1.22421 0.85166 0.99039 0.95308 1.21725 1.01692 1.01169 0.96058 1.22871 0.93660 0.98160 0.95293 1.22125 0.99689 0.94413 0.97924 1.22491 1.00330 0.96826 0.96171 1.22541 1.00574 0.98342 0.95379 1.22113 0.99514 0.92609 0.99954 0.93619 0.93120 0.93777 0.91572 0.93486 0.95021 0.92818 0.92704 0.92383 0.87386 0.93667 0.93918 0.91588 0.92085 0.91943 0.92183 0.91164 0.92353 0.92637 0.92682 0.91923 0.92940 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.14 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.15 3.22 3.90 -4.04 -0.02 3.21 16 4 N -0.59 -13.45 1.55 -165.12 -0.26 -13.71 16 5 C -0.27 -7.11 7.60 -15.06 -0.11 -7.22 16 6 H 0.07 2.09 7.25 -52.49 -0.38 1.71 16 7 C 0.04 1.19 5.09 -17.43 -0.09 1.11 16 8 N -0.89 -26.33 13.97 55.49 0.78 -25.56 16 9 Si 0.87 21.50 20.94 -169.99 -3.56 17.94 16 10 H -0.28 -6.84 6.18 56.52 0.35 -6.49 16 11 H -0.26 -6.06 4.75 56.52 0.27 -5.79 16 12 H -0.32 -8.20 7.11 56.52 0.40 -7.80 16 13 C 0.17 3.45 3.91 -67.45 -0.26 3.19 16 14 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 15 C -0.15 -2.88 6.80 -25.77 -0.18 -3.05 16 16 C 0.07 1.20 3.84 -26.14 -0.10 1.10 16 17 H 0.06 1.03 7.63 -51.93 -0.40 0.64 16 18 O -0.37 -5.78 8.86 -35.23 -0.31 -6.09 16 19 C 0.06 0.72 6.51 37.16 0.24 0.96 16 20 C -0.15 -1.52 10.28 37.16 0.38 -1.13 16 21 C -0.10 -1.79 1.08 -154.01 -0.17 -1.96 16 22 C -0.10 -1.74 6.12 -25.34 -0.15 -1.89 16 23 C -0.12 -1.87 6.91 -24.61 -0.17 -2.04 16 24 C -0.13 -2.36 5.89 -24.93 -0.15 -2.51 16 25 C -0.11 -2.13 4.77 -25.87 -0.12 -2.25 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.05 1.26 5.15 -51.93 -0.27 0.99 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.30 6.38 -51.93 -0.33 1.97 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 42 H 0.07 1.13 6.81 -51.93 -0.35 0.78 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.20 6.35 -51.93 -0.33 0.87 16 47 H 0.05 1.03 7.74 -51.93 -0.40 0.63 16 48 H 0.10 2.37 0.59 -51.93 -0.03 2.34 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -28.10 346.75 -7.82 -35.91 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.99 Total: 3.65 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.69 Total: -17.37 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.52 Total: -39.27 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.31 Total: -6.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -3.56 Total: 17.94 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.10 -7.82 -35.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121046201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.602 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds