Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.52995 * 109.46982 * 185.50445 * 3 2 1 5 5 H 1.09001 * 109.47072 * 56.39907 * 4 3 2 6 6 C 1.50698 * 109.47038 * 176.39595 * 4 3 2 7 7 O 1.21288 * 119.99892 * 46.85102 * 6 4 3 8 8 N 1.34783 * 120.00207 * 226.57348 * 6 4 3 9 9 C 1.46498 * 119.99804 * 175.70529 * 8 6 4 10 10 C 1.50698 * 109.47253 * 90.00117 * 9 8 6 11 11 H 1.07996 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00003 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00006 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47455 * 89.99676 * 14 12 10 16 16 H 1.48499 * 109.47298 * 209.99882 * 14 12 10 17 17 H 1.48500 * 109.46978 * 329.99529 * 14 12 10 18 18 C 1.46496 * 119.99754 * 355.70563 * 8 6 4 19 19 C 1.52999 * 109.47190 * 92.81258 * 18 8 6 20 20 C 1.52998 * 117.50078 * 243.74336 * 19 18 8 21 21 C 1.52998 * 117.49865 * 175.08269 * 19 18 8 22 22 C 1.52997 * 109.47187 * 296.39849 * 4 3 2 23 23 C 1.53002 * 109.47015 * 174.86045 * 22 4 3 24 24 C 1.53003 * 109.46993 * 294.85826 * 22 4 3 25 25 H 1.09003 * 109.47112 * 299.99962 * 1 2 3 26 26 H 1.08997 * 109.46907 * 60.00464 * 1 2 3 27 27 H 1.09008 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47626 * 239.99922 * 2 1 3 29 29 H 1.08997 * 109.46907 * 119.99536 * 2 1 3 30 30 H 1.09002 * 109.47063 * 65.50126 * 3 2 1 31 31 H 1.09000 * 109.46884 * 305.50196 * 3 2 1 32 32 H 1.08998 * 109.46815 * 210.00418 * 9 8 6 33 33 H 1.09001 * 109.47435 * 330.00022 * 9 8 6 34 34 H 0.96998 * 119.99899 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47067 * 212.81680 * 18 8 6 36 36 H 1.09001 * 109.46951 * 332.80903 * 18 8 6 37 37 H 1.08998 * 115.54638 * 29.41491 * 19 18 8 38 38 H 1.09003 * 117.49807 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.49839 * 145.01895 * 20 19 18 40 40 H 1.09004 * 117.50157 * 214.98001 * 21 19 18 41 41 H 1.09003 * 117.50118 * 0.02562 * 21 19 18 42 42 H 1.08994 * 109.47553 * 54.85971 * 22 4 3 43 43 H 1.09001 * 109.47359 * 62.99336 * 23 22 4 44 44 H 1.09008 * 109.46913 * 182.99292 * 23 22 4 45 45 H 1.09000 * 109.47046 * 302.99025 * 23 22 4 46 46 H 1.08991 * 109.47004 * 53.80731 * 24 22 4 47 47 H 1.09002 * 109.46689 * 173.80965 * 24 22 4 48 48 H 1.09003 * 109.46767 * 293.80215 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5637 1.4448 -0.1384 5 1 3.8473 0.9042 -1.0414 6 6 4.0579 2.8656 -0.2274 7 8 3.6505 3.6994 0.5536 8 7 4.9568 3.2086 -1.1712 9 6 5.3664 4.6074 -1.3187 10 6 6.5618 4.8760 -0.4412 11 1 6.9748 4.0841 0.1659 12 6 7.1282 6.1328 -0.4135 13 7 6.6255 7.0971 -1.1533 14 14 8.6104 6.4656 0.6736 15 1 9.8550 6.1930 -0.0892 16 1 8.5970 7.8856 1.1078 17 1 8.5575 5.5827 1.8664 18 6 5.5242 2.1827 -2.0496 19 6 4.6907 2.0889 -3.3291 20 6 3.9594 0.7728 -3.6011 21 6 5.1895 1.1508 -4.4300 22 6 4.1875 0.7632 1.0811 23 6 5.7006 0.6507 0.8840 24 6 3.8966 1.5928 2.3334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7593 1.9271 0.9352 31 1 1.5984 1.9840 -0.8366 32 1 5.6282 4.8016 -2.3588 33 1 4.5448 5.2598 -1.0230 34 1 7.0238 7.9813 -1.1335 35 1 6.5505 2.4484 -2.3030 36 1 5.5140 1.2202 -1.5379 37 1 4.1990 3.0112 -3.6384 38 1 4.0718 -0.0261 -2.8682 39 1 2.9867 0.8293 -4.0897 40 1 5.0256 1.4556 -5.4636 41 1 6.1113 0.6000 -4.2425 42 1 3.7613 -0.2331 1.1982 43 1 6.1339 1.6488 0.8201 44 1 6.1383 0.1179 1.7282 45 1 5.9075 0.1051 -0.0367 46 1 2.8235 1.7659 2.4133 47 1 4.2445 1.0541 3.2149 48 1 4.4149 2.5492 2.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121556530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -40.107312 kcal Electronic energy + Delta-G solvation = -24136.163573 eV Core-core repulsion = 20998.016185 eV Total energy + Delta-G solvation = -3138.147388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90425 -37.32095 -36.25830 -34.29463 -33.63612 -32.45135 -29.39232 -27.90034 -26.79210 -26.10678 -24.37370 -22.57618 -22.28818 -21.69261 -20.60553 -19.78303 -17.69988 -16.67675 -16.40688 -15.46369 -15.23360 -15.09537 -14.83560 -14.27631 -14.09882 -13.62835 -13.49422 -13.04396 -12.95405 -12.73030 -12.17465 -12.11614 -11.89705 -11.81443 -11.74336 -11.47019 -11.27793 -11.24977 -11.15450 -10.98663 -10.83702 -10.82526 -10.57302 -10.48909 -10.31283 -10.22611 -10.05351 -9.99936 -9.73727 -9.54964 -8.56314 -8.39445 -7.56823 -6.00165 -4.04113 3.31878 3.38624 3.42477 3.54200 3.85455 4.09220 4.48109 4.78451 4.86654 5.00367 5.06917 5.07264 5.17588 5.21231 5.25557 5.33685 5.35027 5.52732 5.57003 5.66969 5.71995 5.77212 5.83374 5.84747 5.91739 5.95270 5.97477 5.99710 6.02818 6.12839 6.15080 6.19693 6.24816 6.28843 6.32482 6.43310 6.50089 6.51892 6.65035 6.86616 7.15022 7.49578 7.63666 7.97011 8.29043 8.53755 8.96316 9.22854 9.60938 11.07881 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.005937 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.339202 B = 4715.320382 C = 5567.760017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.110 4.110 5 H 0.087 0.913 6 C 0.516 3.484 7 O -0.537 6.537 8 N -0.595 5.595 9 C 0.247 3.753 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.061 3.939 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.137 3.863 19 C -0.164 4.164 20 C -0.184 4.184 21 C -0.178 4.178 22 C -0.080 4.080 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 -16.688 -2.081 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.132 4.132 5 H 0.105 0.895 6 C 0.303 3.697 7 O -0.415 6.415 8 N -0.326 5.326 9 C 0.128 3.872 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.013 3.987 19 C -0.183 4.183 20 C -0.221 4.221 21 C -0.215 4.215 22 C -0.099 4.099 23 C -0.213 4.213 24 C -0.208 4.208 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.740 -16.005 -1.706 17.450 hybrid contribution 0.926 0.300 0.351 1.035 sum -5.814 -15.706 -1.356 16.802 Atomic orbital electron populations 1.21768 0.96121 1.01119 1.01876 1.21564 0.95549 0.97048 1.01818 1.21485 0.93118 0.96427 1.03135 1.21558 0.96633 0.95161 0.99843 0.89493 1.20227 0.79266 0.89441 0.80771 1.90641 1.58383 1.52245 1.40187 1.48192 1.41430 1.10250 1.32699 1.19232 0.95826 0.75355 0.96827 1.21415 1.13011 0.96043 1.25416 0.92554 1.24919 0.97454 0.95960 0.95757 1.69934 1.41080 1.02406 1.40093 0.86545 0.82727 0.77539 0.80905 1.20717 1.21161 1.19924 1.21129 0.97019 0.92192 0.88359 1.22957 1.03010 0.94741 0.97610 1.23036 0.96457 0.98986 1.03607 1.22910 0.98174 1.03996 0.96453 1.21011 0.95578 0.98723 0.94608 1.22015 0.95587 1.02868 1.00863 1.21962 1.02229 1.00965 0.95598 0.92773 0.92834 0.93100 0.92224 0.91863 0.90633 0.92092 0.95198 0.94167 0.92832 0.89857 0.90863 0.87477 0.88996 0.89213 0.89047 0.88834 0.90877 0.91465 0.92800 0.92928 0.92425 0.93822 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.29 5.52 -26.73 -0.15 -1.44 16 3 C -0.10 -1.43 4.29 -26.73 -0.11 -1.55 16 4 C -0.11 -1.67 1.58 -91.78 -0.15 -1.81 16 5 H 0.09 1.18 4.02 -51.93 -0.21 0.97 16 6 C 0.52 10.54 5.14 -10.98 -0.06 10.48 16 7 O -0.54 -13.26 14.10 5.55 0.08 -13.18 16 8 N -0.60 -12.43 2.46 -175.06 -0.43 -12.86 16 9 C 0.25 6.44 5.14 -5.20 -0.03 6.41 16 10 C -0.52 -14.69 9.39 -34.44 -0.32 -15.01 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 14 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.14 2.26 5.28 -4.04 -0.02 2.24 16 19 C -0.16 -2.34 5.91 -90.62 -0.54 -2.87 16 20 C -0.18 -2.08 9.38 -26.70 -0.25 -2.33 16 21 C -0.18 -2.04 10.25 -26.70 -0.27 -2.31 16 22 C -0.08 -1.12 2.54 -90.62 -0.23 -1.35 16 23 C -0.16 -2.20 8.14 37.16 0.30 -1.90 16 24 C -0.15 -2.36 8.17 37.16 0.30 -2.06 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 30 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.19 7.49 -51.93 -0.39 0.80 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 36 H 0.07 1.04 3.69 -51.93 -0.19 0.85 16 37 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.09 0.95 7.17 -51.93 -0.37 0.58 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 43 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 44 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 45 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 46 H 0.06 0.88 6.23 -51.93 -0.32 0.56 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.45 6.39 -51.93 -0.33 1.12 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -31.33 367.24 -8.95 -40.28 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.60 Total: 2.20 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.25 Total: -12.94 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.31 Total: -38.89 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.33 -8.95 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121556530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.170 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds