Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 C 1.52995 * 109.46982 * 185.50445 * 3 2 1 5 5 H 1.09001 * 109.47072 * 56.39907 * 4 3 2 6 6 C 1.50698 * 109.47038 * 176.39595 * 4 3 2 7 7 O 1.21288 * 119.99892 * 46.85102 * 6 4 3 8 8 N 1.34783 * 120.00207 * 226.57348 * 6 4 3 9 9 C 1.46498 * 119.99804 * 175.70529 * 8 6 4 10 10 C 1.50698 * 109.47253 * 90.00117 * 9 8 6 11 11 H 1.07996 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00003 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00006 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47455 * 89.99676 * 14 12 10 16 16 H 1.48499 * 109.47298 * 209.99882 * 14 12 10 17 17 H 1.48500 * 109.46978 * 329.99529 * 14 12 10 18 18 C 1.46496 * 119.99754 * 355.70563 * 8 6 4 19 19 C 1.52999 * 109.47190 * 92.81258 * 18 8 6 20 20 C 1.52998 * 117.50078 * 243.74336 * 19 18 8 21 21 C 1.52998 * 117.49865 * 175.08269 * 19 18 8 22 22 C 1.52997 * 109.47187 * 296.39849 * 4 3 2 23 23 C 1.53002 * 109.47015 * 174.86045 * 22 4 3 24 24 C 1.53003 * 109.46993 * 294.85826 * 22 4 3 25 25 H 1.09003 * 109.47112 * 299.99962 * 1 2 3 26 26 H 1.08997 * 109.46907 * 60.00464 * 1 2 3 27 27 H 1.09008 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47626 * 239.99922 * 2 1 3 29 29 H 1.08997 * 109.46907 * 119.99536 * 2 1 3 30 30 H 1.09002 * 109.47063 * 65.50126 * 3 2 1 31 31 H 1.09000 * 109.46884 * 305.50196 * 3 2 1 32 32 H 1.08998 * 109.46815 * 210.00418 * 9 8 6 33 33 H 1.09001 * 109.47435 * 330.00022 * 9 8 6 34 34 H 0.96998 * 119.99899 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47067 * 212.81680 * 18 8 6 36 36 H 1.09001 * 109.46951 * 332.80903 * 18 8 6 37 37 H 1.08998 * 115.54638 * 29.41491 * 19 18 8 38 38 H 1.09003 * 117.49807 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.49839 * 145.01895 * 20 19 18 40 40 H 1.09004 * 117.50157 * 214.98001 * 21 19 18 41 41 H 1.09003 * 117.50118 * 0.02562 * 21 19 18 42 42 H 1.08994 * 109.47553 * 54.85971 * 22 4 3 43 43 H 1.09001 * 109.47359 * 62.99336 * 23 22 4 44 44 H 1.09008 * 109.46913 * 182.99292 * 23 22 4 45 45 H 1.09000 * 109.47046 * 302.99025 * 23 22 4 46 46 H 1.08991 * 109.47004 * 53.80731 * 24 22 4 47 47 H 1.09002 * 109.46689 * 173.80965 * 24 22 4 48 48 H 1.09003 * 109.46767 * 293.80215 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5637 1.4448 -0.1384 5 1 3.8473 0.9042 -1.0414 6 6 4.0579 2.8656 -0.2274 7 8 3.6505 3.6994 0.5536 8 7 4.9568 3.2086 -1.1712 9 6 5.3664 4.6074 -1.3187 10 6 6.5618 4.8760 -0.4412 11 1 6.9748 4.0841 0.1659 12 6 7.1282 6.1328 -0.4135 13 7 6.6255 7.0971 -1.1533 14 14 8.6104 6.4656 0.6736 15 1 9.8550 6.1930 -0.0892 16 1 8.5970 7.8856 1.1078 17 1 8.5575 5.5827 1.8664 18 6 5.5242 2.1827 -2.0496 19 6 4.6907 2.0889 -3.3291 20 6 3.9594 0.7728 -3.6011 21 6 5.1895 1.1508 -4.4300 22 6 4.1875 0.7632 1.0811 23 6 5.7006 0.6507 0.8840 24 6 3.8966 1.5928 2.3334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7593 1.9271 0.9352 31 1 1.5984 1.9840 -0.8366 32 1 5.6282 4.8016 -2.3588 33 1 4.5448 5.2598 -1.0230 34 1 7.0238 7.9813 -1.1335 35 1 6.5505 2.4484 -2.3030 36 1 5.5140 1.2202 -1.5379 37 1 4.1990 3.0112 -3.6384 38 1 4.0718 -0.0261 -2.8682 39 1 2.9867 0.8293 -4.0897 40 1 5.0256 1.4556 -5.4636 41 1 6.1113 0.6000 -4.2425 42 1 3.7613 -0.2331 1.1982 43 1 6.1339 1.6488 0.8201 44 1 6.1383 0.1179 1.7282 45 1 5.9075 0.1051 -0.0367 46 1 2.8235 1.7659 2.4133 47 1 4.2445 1.0541 3.2149 48 1 4.4149 2.5492 2.2641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121556530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -57.068279 kcal Electronic energy + Delta-G solvation = -24136.899056 eV Core-core repulsion = 20998.016185 eV Total energy + Delta-G solvation = -3138.882870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39542 -38.48063 -37.63029 -36.02034 -34.69344 -34.46528 -30.70605 -29.60262 -28.05479 -27.60622 -25.86592 -24.26071 -23.19023 -22.74664 -21.79429 -21.10719 -19.16853 -18.59990 -18.08877 -17.09004 -16.69962 -16.21915 -16.08964 -15.97424 -15.25186 -14.82186 -14.61920 -14.56203 -14.26495 -14.00496 -13.89610 -13.61568 -13.40787 -13.07642 -12.95118 -12.79100 -12.75830 -12.59206 -12.52479 -12.35738 -12.25465 -12.18693 -12.00005 -11.81534 -11.72112 -11.59041 -11.37379 -11.24218 -11.11247 -10.81922 -10.64584 -10.19272 -9.36317 -8.22145 -6.36512 1.33307 1.36530 1.46771 1.94077 2.30463 2.46295 2.98534 3.06731 3.60296 3.74752 3.92563 3.94103 4.04994 4.09660 4.22101 4.23391 4.34987 4.38097 4.42279 4.60297 4.67107 4.74268 4.77675 4.83086 4.85278 4.87642 4.92214 4.98420 5.01840 5.07146 5.08557 5.09346 5.16696 5.21804 5.24967 5.30892 5.33975 5.34933 5.42135 5.47991 5.50139 5.60082 5.63891 5.89012 6.07809 6.71466 6.88751 7.29896 7.60019 8.84737 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.005937 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.339202 B = 4715.320382 C = 5567.760017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.097 4.097 5 H 0.111 0.889 6 C 0.507 3.493 7 O -0.592 6.592 8 N -0.600 5.600 9 C 0.265 3.735 10 C -0.534 4.534 11 H 0.051 0.949 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.965 3.035 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.139 3.861 19 C -0.197 4.197 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.077 4.077 23 C -0.155 4.155 24 C -0.147 4.147 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.016 0.984 33 H -0.009 1.009 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.021 0.979 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 -20.757 -2.260 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.139 4.139 4 C -0.118 4.118 5 H 0.129 0.871 6 C 0.297 3.703 7 O -0.473 6.473 8 N -0.330 5.330 9 C 0.144 3.856 10 C -0.573 4.573 11 H 0.069 0.931 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.199 1.199 18 C 0.017 3.983 19 C -0.217 4.217 20 C -0.198 4.198 21 C -0.199 4.199 22 C -0.096 4.096 23 C -0.212 4.212 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.009 0.991 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.310 -20.118 -1.917 21.172 hybrid contribution 0.750 1.611 0.389 1.819 sum -5.560 -18.508 -1.528 19.385 Atomic orbital electron populations 1.21774 0.95516 1.02259 1.01421 1.21534 0.96063 0.94166 1.03365 1.21482 0.91992 0.98977 1.01486 1.21587 0.97475 0.91021 1.01680 0.87124 1.21316 0.78160 0.91520 0.79297 1.90607 1.60107 1.54430 1.42143 1.48178 1.41850 1.09055 1.33897 1.18622 0.93483 0.78194 0.95333 1.21651 1.13649 0.96299 1.25656 0.93111 1.25841 1.00569 0.95644 0.97088 1.70060 1.42603 1.02878 1.41454 0.85458 0.79375 0.77346 0.78904 1.18704 1.20620 1.19895 1.21299 0.96398 0.91724 0.88904 1.22676 1.05389 0.95503 0.98100 1.23179 0.96840 0.96531 1.03250 1.23034 0.99114 1.01790 0.95959 1.21118 0.95780 1.00008 0.92651 1.22011 0.95317 1.00793 1.03087 1.21906 1.01541 0.99150 0.97866 0.93501 0.93211 0.91082 0.90250 0.90540 0.92762 0.93493 0.96597 0.99079 0.92514 0.91463 0.87997 0.90505 0.86809 0.88172 0.88237 0.87275 0.86521 0.95932 0.90883 0.90402 0.92595 0.91537 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.11 -1.98 5.52 30.60 0.17 -1.81 16 3 C -0.10 -2.69 4.29 30.59 0.13 -2.56 16 4 C -0.10 -2.79 1.58 -11.54 -0.02 -2.81 16 5 H 0.11 2.63 4.02 -2.39 -0.01 2.62 16 6 C 0.51 21.71 5.14 87.66 0.45 22.16 16 7 O -0.59 -31.53 14.10 -3.05 -0.04 -31.58 16 8 N -0.60 -26.46 2.46 -826.16 -2.03 -28.49 16 9 C 0.27 14.94 5.14 85.63 0.44 15.38 16 10 C -0.53 -31.80 9.39 25.60 0.24 -31.56 16 11 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.42 5.46 84.65 0.46 0.89 16 13 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 14 Si 0.96 46.27 29.54 68.60 2.03 48.30 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 18 C 0.14 4.59 5.28 86.38 0.46 5.04 16 19 C -0.20 -5.52 5.91 -10.80 -0.06 -5.58 16 20 C -0.16 -3.08 9.38 30.62 0.29 -2.79 16 21 C -0.16 -3.26 10.25 30.62 0.31 -2.94 16 22 C -0.08 -1.96 2.54 -10.79 -0.03 -1.99 16 23 C -0.15 -4.00 8.14 71.98 0.59 -3.42 16 24 C -0.15 -4.59 8.17 71.98 0.59 -4.01 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.16 6.69 -2.39 -0.02 1.15 16 30 H 0.05 1.67 6.17 -2.39 -0.01 1.66 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 33 H -0.01 -0.58 7.49 -2.39 -0.02 -0.60 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 36 H 0.10 2.68 3.69 -2.39 -0.01 2.67 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.11 1.71 7.17 -2.39 -0.02 1.69 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.12 2.09 6.41 -2.39 -0.02 2.08 16 43 H 0.02 0.77 7.48 -2.39 -0.02 0.75 16 44 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.08 1.59 6.82 -2.39 -0.02 1.57 16 46 H 0.06 1.72 6.23 -2.39 -0.01 1.71 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.02 0.96 6.39 -2.39 -0.02 0.95 16 Total: -1.00 -75.32 367.24 5.88 -69.45 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.91 Total: 17.71 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.73 Total: -17.77 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.74 Total: -86.10 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.04 Total: -31.58 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.32 5.88 -69.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121556530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.377 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds