Wall clock time and date at job start Tue Mar 31 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 N 1.46505 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.37100 * 119.99850 * 94.51193 * 4 3 2 6 6 H 1.07999 * 119.99762 * 213.84112 * 5 4 3 7 7 C 1.38944 * 120.00155 * 33.83578 * 5 4 3 8 8 N 1.31416 * 119.99874 * 22.66793 * 7 5 4 9 9 Si 1.86802 * 120.00168 * 202.66789 * 7 5 4 10 10 H 1.48501 * 109.47235 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46858 * 300.00199 * 9 7 5 12 12 H 1.48498 * 109.47068 * 60.00018 * 9 7 5 13 13 C 1.34773 * 119.99966 * 274.51415 * 4 3 2 14 14 O 1.21290 * 119.99990 * 359.97438 * 13 4 3 15 15 C 1.50701 * 119.99991 * 179.97438 * 13 4 3 16 16 C 1.52996 * 109.47341 * 179.97438 * 15 13 4 17 17 H 1.09007 * 109.46744 * 54.99905 * 16 15 13 18 18 C 1.53000 * 109.47462 * 295.00225 * 16 15 13 19 19 C 1.52997 * 109.47280 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46785 * 60.00034 * 19 18 16 21 21 C 1.52993 * 109.47101 * 299.99538 * 20 19 18 22 22 C 1.53004 * 109.47101 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47530 * 300.00450 * 21 20 19 24 24 C 1.52995 * 109.47294 * 174.99904 * 16 15 13 25 25 H 1.08998 * 109.47026 * 299.99876 * 1 2 3 26 26 H 1.09001 * 109.47028 * 60.00604 * 1 2 3 27 27 H 1.09008 * 109.46866 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47402 * 240.00268 * 2 1 3 29 29 H 1.08995 * 109.47383 * 120.00204 * 2 1 3 30 30 H 1.08998 * 109.47203 * 60.00233 * 3 2 1 31 31 H 1.09005 * 109.47270 * 299.99714 * 3 2 1 32 32 H 0.97004 * 119.99666 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46993 * 300.00000 * 15 13 4 34 34 H 1.08997 * 109.46958 * 59.99893 * 15 13 4 35 35 H 1.08994 * 109.46887 * 299.99855 * 18 16 15 36 36 H 1.09003 * 109.47035 * 59.99700 * 18 16 15 37 37 H 1.09000 * 109.46956 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47300 * 300.00340 * 19 18 16 39 39 H 1.09002 * 109.46951 * 60.00093 * 20 19 18 40 40 H 1.09000 * 109.46678 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.46678 * 59.99962 * 22 21 20 42 42 H 1.09002 * 109.47072 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46951 * 300.00555 * 22 21 20 44 44 H 1.08994 * 109.47169 * 60.00026 * 23 21 20 45 45 H 1.09000 * 109.47230 * 180.02562 * 23 21 20 46 46 H 1.09008 * 109.46859 * 299.99494 * 23 21 20 47 47 H 1.09000 * 109.47313 * 300.00241 * 24 16 15 48 48 H 1.08994 * 109.47010 * 60.00172 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1910 1.5359 -1.1828 6 1 5.1338 1.0229 -1.3022 7 6 3.6731 2.2903 -2.2284 8 7 2.8069 3.2474 -1.9820 9 14 4.2081 1.9441 -3.9843 10 1 3.5163 2.8803 -4.9063 11 1 5.6769 2.1308 -4.1002 12 1 3.8571 0.5463 -4.3423 13 6 4.1784 1.3510 1.1645 14 8 3.5715 1.2689 2.2114 15 6 5.6854 1.3505 1.1651 16 6 6.1948 1.2380 2.6033 17 1 5.7597 0.3568 3.0750 18 6 5.7902 2.4881 3.3871 19 6 6.2991 2.3753 4.8255 20 6 7.8239 2.2490 4.8185 21 6 8.2285 0.9989 4.0349 22 6 9.7533 0.8729 4.0274 23 6 7.6173 -0.2379 4.6965 24 6 7.7196 1.1120 2.5959 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.4457 3.7743 -2.7120 33 1 6.0486 0.5034 0.5832 34 1 6.0491 2.2779 0.7227 35 1 6.2252 3.3692 2.9154 36 1 4.7038 2.5779 3.3923 37 1 6.0104 3.2658 5.3839 38 1 5.8637 1.4942 5.2969 39 1 8.2592 3.1302 4.3471 40 1 8.1865 2.1691 5.8433 41 1 10.1163 0.7928 5.0520 42 1 10.0416 -0.0175 3.4687 43 1 10.1883 1.7541 3.5557 44 1 6.5311 -0.1479 4.7014 45 1 7.9060 -1.1286 4.1385 46 1 7.9800 -0.3183 5.7214 47 1 8.0079 0.2213 2.0376 48 1 8.1546 1.9931 2.1243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121781300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:08 Heat of formation + Delta-G solvation = -79.489368 kcal Electronic energy + Delta-G solvation = -23671.289966 eV Core-core repulsion = 20531.434844 eV Total energy + Delta-G solvation = -3139.855122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61809 -38.23839 -35.19022 -33.32576 -32.73357 -31.59650 -31.12191 -27.32205 -27.13469 -26.02157 -25.51065 -24.13479 -21.70217 -20.90661 -19.99936 -18.89829 -18.18054 -16.63252 -15.84936 -15.00482 -14.72638 -14.57441 -14.39393 -14.13686 -14.03052 -13.62201 -13.59657 -13.10986 -12.68976 -12.41479 -12.33124 -12.10235 -11.71435 -11.62072 -11.52675 -11.37372 -11.27331 -11.13087 -10.96174 -10.92820 -10.85642 -10.64510 -10.58338 -10.38590 -10.31067 -10.21346 -9.79076 -9.69762 -9.60353 -9.51424 -9.03272 -8.21773 -7.46737 -6.35868 -4.01180 3.12279 3.21002 3.23177 3.98728 4.13330 4.71748 4.86214 4.95944 4.96537 5.08489 5.36230 5.49732 5.60107 5.67130 5.73451 5.76235 5.81666 5.82962 5.86234 5.89193 5.92424 5.96165 6.08704 6.12240 6.16690 6.17957 6.26826 6.32768 6.39364 6.43469 6.50223 6.54530 6.56568 6.57971 6.66179 6.72716 6.77592 6.79018 6.86483 7.07779 7.09533 7.20301 7.40036 7.53487 7.98146 8.41666 9.11426 9.60465 10.03589 10.65219 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.004842 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.997653 B = 5781.228787 C = 6632.978708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.441 5.441 5 C -0.338 4.338 6 H 0.089 0.911 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.911 3.089 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.469 3.531 14 O -0.604 6.604 15 C -0.115 4.115 16 C -0.068 4.068 17 H 0.073 0.927 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.103 4.103 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.269 0.731 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -3.489 7.073 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.159 5.159 5 C -0.466 4.466 6 H 0.106 0.894 7 C -0.163 4.163 8 N -0.494 5.494 9 Si 0.737 3.263 10 H -0.209 1.209 11 H -0.198 1.198 12 H -0.199 1.199 13 C 0.259 3.741 14 O -0.491 6.491 15 C -0.155 4.155 16 C -0.086 4.086 17 H 0.091 0.909 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.064 4.064 22 C -0.197 4.197 23 C -0.202 4.202 24 C -0.141 4.141 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.005 -3.362 7.445 10.761 hybrid contribution 0.298 -0.085 -1.167 1.208 sum 7.303 -3.447 6.278 10.229 Atomic orbital electron populations 1.21655 0.96706 1.00338 1.01335 1.21830 0.94604 0.99642 1.01161 1.21420 0.81769 0.94350 1.03417 1.43516 1.04677 1.62723 1.04955 1.19376 1.07235 1.29940 0.90034 0.89355 1.25294 0.97113 0.93597 1.00276 1.69949 1.30328 1.16315 1.32844 0.86267 0.79003 0.78520 0.82510 1.20939 1.19761 1.19865 1.20437 0.89582 0.80576 0.83548 1.90466 1.70519 1.56484 1.31640 1.21418 0.94401 1.03131 0.96565 1.20896 0.93442 0.99227 0.95074 0.90855 1.21665 1.03050 0.96877 0.93771 1.21559 0.94881 1.01157 0.97933 1.21589 0.96568 0.97167 0.99018 1.20515 0.94528 0.95441 0.95893 1.21869 0.95304 1.01441 1.01117 1.21972 1.01830 0.96874 0.99493 1.21675 0.96094 1.01381 0.94921 0.93172 0.93056 0.93723 0.92524 0.92964 0.93171 0.87697 0.92058 0.90856 0.89964 0.93258 0.89526 0.92861 0.91989 0.92360 0.92841 0.93132 0.92892 0.92895 0.91502 0.93084 0.93394 0.92410 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.13 -2.80 6.23 -26.73 -0.17 -2.97 16 3 C 0.11 2.76 4.92 -4.04 -0.02 2.74 16 4 N -0.44 -11.11 2.56 -114.81 -0.29 -11.41 16 5 C -0.34 -8.53 8.70 -14.93 -0.13 -8.66 16 6 H 0.09 2.13 6.97 -52.49 -0.37 1.76 16 7 C 0.04 1.08 4.92 -17.47 -0.09 0.99 16 8 N -0.86 -22.59 11.34 55.50 0.63 -21.96 16 9 Si 0.91 19.34 29.61 -169.99 -5.03 14.30 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.47 11.28 7.32 -10.99 -0.08 11.20 16 14 O -0.60 -15.45 13.62 5.55 0.08 -15.38 16 15 C -0.12 -2.30 3.83 -27.88 -0.11 -2.40 16 16 C -0.07 -1.16 1.56 -90.62 -0.14 -1.30 16 17 H 0.07 1.34 6.24 -51.92 -0.32 1.02 16 18 C -0.12 -2.01 4.94 -26.73 -0.13 -2.14 16 19 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 20 C -0.11 -1.31 4.73 -26.73 -0.13 -1.44 16 21 C -0.06 -0.78 0.77 -154.49 -0.12 -0.90 16 22 C -0.14 -1.48 8.47 37.16 0.31 -1.16 16 23 C -0.14 -1.76 7.78 37.16 0.29 -1.47 16 24 C -0.10 -1.45 4.01 -26.71 -0.11 -1.56 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 1.27 7.56 -51.93 -0.39 0.87 16 31 H 0.11 2.69 5.35 -51.93 -0.28 2.41 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.07 1.39 7.64 -51.93 -0.40 1.00 16 34 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.79 5.95 -51.93 -0.31 1.48 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.90 6.43 -51.93 -0.33 0.56 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.91 4.81 -51.93 -0.25 0.66 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -27.23 359.84 -8.56 -35.79 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.97 Total: 6.22 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.39 Total: -12.99 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.34 Total: -33.36 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.23 -8.56 -35.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121781300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.701 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds