Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47179 * 2 1 4 4 H 1.08992 * 109.46921 * 305.04127 * 3 2 1 5 5 C 1.53000 * 109.47550 * 65.04808 * 3 2 1 6 6 C 1.50702 * 109.47119 * 63.27823 * 5 3 2 7 7 O 1.21287 * 120.00065 * 352.98505 * 6 5 3 8 8 N 1.34773 * 119.99819 * 172.98220 * 6 5 3 9 9 C 1.37100 * 120.00188 * 355.87395 * 8 6 5 10 10 H 1.08001 * 119.99781 * 231.23566 * 9 8 6 11 11 C 1.38947 * 119.99939 * 51.23344 * 9 8 6 12 12 N 1.31409 * 119.99921 * 28.32026 * 11 9 8 13 13 Si 1.86801 * 120.00079 * 208.32410 * 11 9 8 14 14 H 1.48503 * 109.47001 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47270 * 119.99769 * 13 11 9 16 16 H 1.48501 * 109.47109 * 239.99978 * 13 11 9 17 17 C 1.46505 * 119.99800 * 175.87747 * 8 6 5 18 18 C 1.54968 * 110.92295 * 126.53880 * 17 8 6 19 19 C 1.54265 * 104.15796 * 156.29161 * 18 17 8 20 20 C 1.53876 * 106.64501 * 336.44686 * 19 18 17 21 21 C 1.54266 * 106.59396 * 359.97276 * 20 19 18 22 22 C 1.53012 * 109.47057 * 185.04535 * 3 2 1 23 23 C 1.53000 * 109.46718 * 59.99763 * 22 3 2 24 24 C 1.52992 * 109.47057 * 179.97438 * 22 3 2 25 25 H 1.08996 * 109.47181 * 302.44621 * 1 2 3 26 26 H 1.08999 * 109.47116 * 62.44787 * 1 2 3 27 27 H 1.09003 * 109.47310 * 182.44488 * 1 2 3 28 28 H 1.09004 * 109.46976 * 239.99489 * 2 1 3 29 29 H 1.09006 * 109.46873 * 120.00172 * 2 1 3 30 30 H 1.08996 * 109.46441 * 303.28636 * 5 3 2 31 31 H 1.08993 * 109.47633 * 183.28310 * 5 3 2 32 32 H 0.96998 * 120.00209 * 184.80949 * 12 11 9 33 33 H 1.08992 * 110.67335 * 3.22964 * 17 8 6 34 34 H 1.08999 * 110.47948 * 37.64259 * 18 17 8 35 35 H 1.08993 * 110.53011 * 274.97413 * 18 17 8 36 36 H 1.08996 * 110.03272 * 217.13132 * 19 18 17 37 37 H 1.09007 * 110.02776 * 95.75485 * 19 18 17 38 38 H 1.08996 * 110.03432 * 119.25261 * 20 19 18 39 39 H 1.08992 * 110.03242 * 240.64316 * 20 19 18 40 40 H 1.09005 * 110.48511 * 142.29067 * 21 20 19 41 41 H 1.08999 * 110.48721 * 264.79820 * 21 20 19 42 42 H 1.09000 * 109.47159 * 300.00189 * 22 3 2 43 43 H 1.08995 * 109.47699 * 300.00024 * 23 22 3 44 44 H 1.09000 * 109.46958 * 60.00303 * 23 22 3 45 45 H 1.09000 * 109.46781 * 179.97438 * 23 22 3 46 46 H 1.09003 * 109.47381 * 59.99895 * 24 22 3 47 47 H 1.09000 * 109.47245 * 180.02562 * 24 22 3 48 48 H 1.09000 * 109.47291 * 300.00108 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9816 -0.8413 5 6 1.6363 2.1262 1.3078 6 6 2.3031 1.4292 2.4657 7 8 2.9257 0.4051 2.2800 8 7 2.2076 1.9440 3.7076 9 6 1.5765 3.1450 3.9052 10 1 2.0691 3.9287 4.4616 11 6 0.3033 3.3539 3.3895 12 7 -0.5125 2.3374 3.2216 13 14 -0.2488 5.0796 2.9349 14 1 0.8473 6.0406 3.2183 15 1 -0.5875 5.1264 1.4899 16 1 -1.4451 5.4436 3.7358 17 6 2.7782 1.2202 4.8464 18 6 3.7395 2.1286 5.6540 19 6 3.7606 1.4983 7.0619 20 6 2.4524 0.7015 7.2077 21 6 1.6805 0.8755 5.8834 22 6 3.5648 1.4443 -0.1269 23 6 3.9685 0.7605 -1.4347 24 6 4.0748 2.8867 -0.1275 25 1 -0.3633 0.5513 0.8672 26 1 -0.3633 0.4753 -0.9111 27 1 -0.3634 -1.0267 0.0438 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5541 2.0733 1.4264 31 1 1.9486 3.1702 1.2835 32 1 -1.3743 2.4721 2.7974 33 1 3.2902 0.3182 4.5116 34 1 3.3545 3.1474 5.6980 35 1 4.7370 2.1154 5.2151 36 1 3.8084 2.2798 7.8202 37 1 4.6171 0.8310 7.1593 38 1 2.6738 -0.3526 7.3750 39 1 1.8656 1.0957 8.0373 40 1 1.1762 -0.0517 5.6111 41 1 0.9610 1.6901 5.9655 42 1 4.0001 0.9050 0.7145 43 1 3.6052 -0.2671 -1.4347 44 1 3.5333 1.2998 -2.2760 45 1 5.0547 0.7622 -1.5253 46 1 3.7871 3.3742 0.8040 47 1 5.1610 2.8880 -0.2183 48 1 3.6395 3.4256 -0.9691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125325812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -64.356750 kcal Electronic energy + Delta-G solvation = -24719.191376 eV Core-core repulsion = 21579.992454 eV Total energy + Delta-G solvation = -3139.198922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.32294 -37.53884 -35.71364 -34.16236 -32.20793 -31.39807 -29.02086 -27.95342 -26.90578 -26.50013 -24.92328 -23.80286 -20.91555 -20.01423 -19.68674 -19.40729 -18.63505 -16.24287 -15.81446 -15.17994 -14.87733 -14.58260 -14.34393 -14.08365 -13.62301 -13.42016 -13.01526 -12.70466 -12.54977 -12.25970 -12.17486 -11.73880 -11.73526 -11.61448 -11.33269 -11.22571 -10.97266 -10.87288 -10.80485 -10.67801 -10.64300 -10.50510 -10.38045 -10.28346 -10.03403 -9.81795 -9.76026 -9.61623 -9.47793 -9.40405 -8.55085 -7.96317 -7.25764 -6.40238 -4.15908 3.10465 3.23256 3.25843 4.08665 4.19519 4.82907 4.85302 5.35243 5.40123 5.44594 5.51932 5.58100 5.59471 5.82290 6.01435 6.06152 6.11662 6.12696 6.18898 6.21178 6.23021 6.29429 6.30953 6.34486 6.38096 6.44897 6.51313 6.52973 6.55430 6.58691 6.63742 6.68669 6.71027 6.80634 6.87012 6.97745 7.00005 7.08040 7.10384 7.21527 7.28201 7.39776 7.45107 7.49284 8.03766 8.69562 8.95138 9.68049 10.10719 10.59824 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.007816 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.545190 B = 3581.577009 C = 4441.498611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.063 4.063 4 H 0.051 0.949 5 C -0.130 4.130 6 C 0.517 3.483 7 O -0.604 6.604 8 N -0.446 5.446 9 C -0.337 4.337 10 H 0.081 0.919 11 C 0.058 3.942 12 N -0.840 5.840 13 Si 0.886 3.114 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.282 1.282 17 C 0.133 3.867 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -0.144 -1.436 4.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.169 4.169 6 C 0.308 3.692 7 O -0.491 6.491 8 N -0.165 5.165 9 C -0.465 4.465 10 H 0.099 0.901 11 C -0.149 4.149 12 N -0.475 5.475 13 Si 0.711 3.289 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.208 1.208 17 C 0.029 3.971 18 C -0.167 4.167 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.124 4.124 23 C -0.199 4.199 24 C -0.203 4.203 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.834 -0.676 -1.497 4.171 hybrid contribution -0.657 1.005 -0.229 1.222 sum 3.178 0.329 -1.725 3.631 Atomic orbital electron populations 1.21848 0.97130 1.00542 1.01541 1.21821 0.94688 0.97087 1.02929 1.20960 0.94604 0.96061 0.96549 0.93029 1.21859 1.04004 0.99231 0.91819 1.20282 0.79955 0.84827 0.84107 1.90340 1.46663 1.27499 1.84620 1.43356 1.50340 1.19577 1.03234 1.19126 0.97588 0.89958 1.39823 0.90103 1.25400 0.94524 0.97768 0.97242 1.70184 1.07707 1.31912 1.37682 0.86550 0.78945 0.84473 0.78904 1.18983 1.20101 1.20828 1.21894 0.93226 0.94651 0.87349 1.22595 0.98987 1.00772 0.94347 1.22038 0.97385 0.98805 0.97459 1.22084 0.96396 0.99072 0.98484 1.22497 0.98376 1.01800 0.92990 1.21421 0.96149 0.95916 0.98914 1.21862 0.99858 1.00563 0.97651 1.21873 0.99628 0.97269 1.01545 0.91319 0.94345 0.94056 0.93667 0.88667 0.87202 0.90763 0.92228 0.90107 0.90675 0.92861 0.92634 0.92753 0.92873 0.92663 0.92951 0.89894 0.87864 0.92736 0.93903 0.93837 0.92182 0.93833 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.73 37.16 0.36 -2.44 16 2 C -0.13 -2.45 4.98 -26.73 -0.13 -2.58 16 3 C -0.06 -1.20 1.72 -90.62 -0.16 -1.36 16 4 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.13 -2.84 3.00 -27.88 -0.08 -2.92 16 6 C 0.52 12.34 6.65 -10.99 -0.07 12.27 16 7 O -0.60 -15.02 10.78 5.55 0.06 -14.96 16 8 N -0.45 -10.58 2.50 -105.58 -0.26 -10.85 16 9 C -0.34 -8.09 7.09 -14.93 -0.11 -8.20 16 10 H 0.08 1.93 6.74 -52.49 -0.35 1.58 16 11 C 0.06 1.39 3.26 -17.47 -0.06 1.33 16 12 N -0.84 -20.85 11.59 55.50 0.64 -20.21 16 13 Si 0.89 18.65 29.64 -169.99 -5.04 13.61 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 C 0.13 2.87 3.29 -65.89 -0.22 2.65 16 18 C -0.13 -2.38 6.36 -25.03 -0.16 -2.54 16 19 C -0.12 -1.86 6.80 -25.61 -0.17 -2.03 16 20 C -0.12 -2.00 6.80 -25.61 -0.17 -2.17 16 21 C -0.12 -2.40 6.39 -25.07 -0.16 -2.56 16 22 C -0.11 -1.92 2.16 -90.62 -0.20 -2.11 16 23 C -0.14 -2.19 8.85 37.16 0.33 -1.86 16 24 C -0.15 -2.45 8.84 37.15 0.33 -2.12 16 25 H 0.07 1.42 6.39 -51.93 -0.33 1.09 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.78 6.17 -51.93 -0.32 0.46 16 29 H 0.10 2.11 5.47 -51.93 -0.28 1.83 16 30 H 0.11 2.56 3.71 -51.93 -0.19 2.37 16 31 H 0.07 1.63 6.15 -51.93 -0.32 1.31 16 32 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 33 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 34 H 0.07 1.46 6.41 -51.93 -0.33 1.13 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.88 7.31 -51.93 -0.38 1.50 16 42 H 0.10 2.18 5.49 -51.93 -0.29 1.89 16 43 H 0.05 0.84 6.32 -51.93 -0.33 0.51 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.10 6.50 -51.93 -0.34 0.76 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -25.01 349.57 -8.46 -33.47 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.46 Total: 10.33 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.67 Total: -16.67 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.38 Total: -31.05 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.06 Total: -14.96 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.04 Total: 13.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -25.01 -8.46 -33.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125325812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.884 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds