Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 H 1.09005 * 109.47238 * 182.45811 * 3 2 1 5 5 C 1.53004 * 109.47352 * 62.45989 * 3 2 1 6 6 C 1.50701 * 109.47084 * 64.99639 * 5 3 2 7 7 O 1.21295 * 120.00104 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00238 * 180.02562 * 6 5 3 9 9 C 1.37090 * 120.00364 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99892 * 223.98721 * 9 8 6 11 11 C 1.38950 * 120.00066 * 43.98281 * 9 8 6 12 12 N 1.31409 * 120.00054 * 18.96724 * 11 9 8 13 13 Si 1.86802 * 120.00138 * 198.97171 * 11 9 8 14 14 H 1.48500 * 109.46871 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47238 * 119.99733 * 13 11 9 16 16 H 1.48498 * 109.46951 * 240.00084 * 13 11 9 17 17 C 1.46505 * 119.99691 * 0.02562 * 8 6 5 18 18 C 1.54261 * 110.03274 * 239.01030 * 17 8 6 19 19 C 1.54961 * 104.16080 * 217.13817 * 18 17 8 20 20 C 1.54893 * 102.77859 * 37.88506 * 19 18 17 21 21 C 1.53877 * 110.03167 * 121.79013 * 17 8 6 22 22 C 1.53000 * 109.47593 * 302.45686 * 3 2 1 23 23 C 1.52996 * 109.47628 * 185.01081 * 22 3 2 24 24 C 1.52997 * 109.47251 * 305.01564 * 22 3 2 25 25 H 1.08996 * 109.47482 * 58.95819 * 1 2 3 26 26 H 1.09003 * 109.46969 * 298.95924 * 1 2 3 27 27 H 1.09002 * 109.47579 * 178.95939 * 1 2 3 28 28 H 1.08997 * 109.47277 * 120.00016 * 2 1 3 29 29 H 1.09008 * 109.47199 * 240.00160 * 2 1 3 30 30 H 1.08996 * 109.47382 * 185.00012 * 5 3 2 31 31 H 1.09000 * 109.46732 * 305.00349 * 5 3 2 32 32 H 0.97002 * 120.00264 * 184.89263 * 12 11 9 33 33 H 1.09002 * 110.01844 * 0.39834 * 17 8 6 34 34 H 1.09003 * 110.48772 * 335.78355 * 18 17 8 35 35 H 1.09001 * 110.48969 * 98.42777 * 18 17 8 36 36 H 1.09001 * 110.72077 * 279.57523 * 19 18 17 37 37 H 1.09006 * 110.92485 * 156.29448 * 19 18 17 38 38 H 1.08999 * 110.48829 * 203.40167 * 20 19 18 39 39 H 1.09000 * 110.59289 * 80.81941 * 20 19 18 40 40 H 1.08998 * 110.03478 * 238.56993 * 21 17 8 41 41 H 1.09003 * 110.02925 * 359.95329 * 21 17 8 42 42 H 1.09011 * 109.46487 * 65.00858 * 22 3 2 43 43 H 1.08996 * 109.47278 * 180.02562 * 23 22 3 44 44 H 1.09002 * 109.46941 * 299.99812 * 23 22 3 45 45 H 1.08998 * 109.47268 * 60.00030 * 23 22 3 46 46 H 1.09001 * 109.47165 * 66.18831 * 24 22 3 47 47 H 1.08991 * 109.47337 * 186.19523 * 24 22 3 48 48 H 1.09001 * 109.46865 * 306.19884 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1291 1.4428 -0.0441 5 6 1.5811 2.1457 1.2791 6 6 2.2309 1.4930 2.4719 7 8 2.9870 0.5577 2.3145 8 7 1.9720 1.9485 3.7136 9 6 2.5635 1.3551 4.7987 10 1 1.9798 1.1400 5.6815 11 6 3.9141 1.0304 4.7627 12 7 4.7042 1.6030 3.8825 13 14 4.6065 -0.2200 5.9653 14 1 3.5183 -0.7143 6.8467 15 1 5.1909 -1.3593 5.2131 16 1 5.6607 0.4199 6.7925 17 6 1.0583 3.0778 3.9038 18 6 1.7877 4.2328 4.6204 19 6 0.7135 4.8334 5.5620 20 6 -0.0510 3.5792 6.0536 21 6 -0.1106 2.6625 4.8143 22 6 1.4801 2.1814 -1.2171 23 6 2.0877 3.5839 -1.2863 24 6 1.8336 1.4092 -2.4897 25 1 -0.3634 0.5299 -0.8804 26 1 -0.3633 0.4976 0.8992 27 1 -0.3634 -1.0275 -0.0187 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8678 3.1965 1.2388 31 1 0.4975 2.0677 1.3678 32 1 5.6308 1.3254 3.8096 33 1 0.6786 3.4170 2.9400 34 1 2.6306 3.8521 5.1974 35 1 2.1235 4.9779 3.8991 36 1 0.0487 5.5003 5.0129 37 1 1.1773 5.3558 6.3988 38 1 -1.0563 3.8480 6.3781 39 1 0.4925 3.0917 6.8630 40 1 -1.0576 2.8009 4.2927 41 1 0.0015 1.6205 5.1139 42 1 0.3964 2.2588 -1.1283 43 1 1.6885 4.1104 -2.1531 44 1 1.8357 4.1341 -0.3797 45 1 3.1713 3.5065 -1.3751 46 1 1.3114 0.4524 -2.4910 47 1 1.5321 1.9888 -3.3621 48 1 2.9092 1.2359 -2.5226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125326042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = -60.595402 kcal Electronic energy + Delta-G solvation = -24376.010153 eV Core-core repulsion = 21236.974335 eV Total energy + Delta-G solvation = -3139.035818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.15984 -37.72110 -36.20077 -33.23158 -31.94560 -31.49546 -29.31822 -28.01082 -26.78499 -26.67143 -25.35245 -23.52670 -21.83633 -20.06166 -19.78356 -19.19205 -18.07577 -16.26464 -15.85284 -15.17837 -14.84122 -14.77711 -14.50227 -14.15060 -13.65534 -13.46918 -13.06811 -12.85605 -12.67862 -12.42109 -12.10311 -11.97138 -11.74908 -11.53870 -11.33113 -11.11186 -11.01029 -10.92040 -10.77858 -10.67813 -10.57645 -10.50029 -10.42582 -10.26111 -10.15785 -9.99184 -9.90255 -9.80713 -9.66024 -9.56797 -8.59431 -7.83424 -6.94519 -5.98858 -3.74620 3.36109 3.45807 3.46800 4.32836 4.48979 4.92698 5.17175 5.22502 5.23022 5.27034 5.29997 5.45691 5.55857 5.60138 5.69011 5.82048 5.83952 5.89566 5.94883 6.00740 6.05316 6.08680 6.12969 6.17157 6.17898 6.19978 6.29437 6.31573 6.37452 6.40882 6.41869 6.43877 6.48983 6.51474 6.55971 6.66875 6.71473 6.82772 6.88058 7.02523 7.04120 7.17796 7.28100 7.74978 8.41330 9.21531 9.33198 9.82411 10.46890 11.08346 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.006924 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.765053 B = 4042.818269 C = 5127.085381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.059 4.059 4 H 0.074 0.926 5 C -0.133 4.133 6 C 0.482 3.518 7 O -0.534 6.534 8 N -0.453 5.453 9 C -0.335 4.335 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.833 5.833 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.289 1.289 17 C 0.130 3.870 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.145 4.145 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.260 0.740 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 4.628 -5.786 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.078 4.078 4 H 0.092 0.908 5 C -0.174 4.174 6 C 0.269 3.731 7 O -0.413 6.413 8 N -0.176 5.176 9 C -0.462 4.462 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.468 5.468 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.215 1.215 17 C 0.025 3.975 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.169 4.169 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.202 4.202 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.256 4.189 -5.903 10.980 hybrid contribution 0.423 -0.419 0.551 0.811 sum -7.833 3.770 -5.352 10.209 Atomic orbital electron populations 1.21868 0.97252 1.00554 1.01168 1.21665 0.94662 0.96863 1.02957 1.20849 1.00677 0.94292 0.91942 0.90784 1.21775 1.00390 1.00183 0.95045 1.19913 0.84357 0.85087 0.83707 1.90465 1.36637 1.29626 1.84525 1.43418 1.41678 1.27081 1.05387 1.18814 0.91306 1.40410 0.95693 0.90796 1.25119 0.95760 0.96288 0.96397 1.69887 1.05558 1.36719 1.34587 0.86377 0.78779 0.81816 0.80430 1.19770 1.20891 1.21517 1.21670 0.90493 0.88358 0.96985 1.22651 0.98965 0.96444 0.98249 1.22452 0.97836 0.96882 0.98899 1.22253 0.98891 0.96141 0.98177 1.22459 0.97424 1.00828 0.96221 1.21208 1.00018 0.94872 0.95154 1.21891 1.01006 0.96565 1.01076 1.21858 1.01565 1.00035 0.96759 0.93303 0.92780 0.93769 0.89322 0.93123 0.91060 0.91136 0.92976 0.91625 0.89146 0.93140 0.92599 0.92428 0.93007 0.91650 0.93079 0.90725 0.91476 0.93481 0.92468 0.92784 0.92538 0.93536 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.13 37.15 0.34 -1.90 16 2 C -0.12 -2.16 4.93 -26.74 -0.13 -2.29 16 3 C -0.06 -1.03 1.40 -90.62 -0.13 -1.15 16 4 H 0.07 1.51 7.96 -51.93 -0.41 1.10 16 5 C -0.13 -2.53 3.18 -27.88 -0.09 -2.62 16 6 C 0.48 11.79 6.67 -10.99 -0.07 11.71 16 7 O -0.53 -15.09 11.74 5.54 0.07 -15.03 16 8 N -0.45 -10.95 2.45 -106.54 -0.26 -11.21 16 9 C -0.34 -8.96 7.41 -14.94 -0.11 -9.07 16 10 H 0.07 1.95 7.12 -52.49 -0.37 1.58 16 11 C 0.07 2.06 4.36 -17.47 -0.08 1.99 16 12 N -0.83 -24.46 11.77 55.50 0.65 -23.80 16 13 Si 0.90 22.04 29.60 -169.99 -5.03 17.00 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.13 2.54 3.20 -66.81 -0.21 2.33 16 18 C -0.12 -2.35 6.42 -25.04 -0.16 -2.51 16 19 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 20 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 21 C -0.13 -2.26 6.20 -25.61 -0.16 -2.42 16 22 C -0.09 -1.30 1.94 -90.62 -0.18 -1.48 16 23 C -0.15 -1.96 8.95 37.16 0.33 -1.63 16 24 C -0.14 -1.81 8.45 37.16 0.31 -1.49 16 25 H 0.05 0.63 6.14 -51.93 -0.32 0.31 16 26 H 0.05 0.84 6.44 -51.93 -0.33 0.50 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.90 5.91 -51.93 -0.31 1.59 16 29 H 0.05 0.81 6.64 -51.92 -0.34 0.46 16 30 H 0.07 1.31 6.01 -51.93 -0.31 1.00 16 31 H 0.07 1.21 5.92 -51.93 -0.31 0.91 16 32 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 33 H 0.07 1.17 5.82 -51.93 -0.30 0.87 16 34 H 0.09 2.04 7.08 -51.93 -0.37 1.67 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.45 6.89 -51.93 -0.36 1.09 16 42 H 0.07 0.88 6.65 -51.92 -0.35 0.54 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -30.24 352.19 -8.48 -38.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.54 Total: 3.55 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.67 Total: -14.53 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.39 Total: -35.02 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.07 Total: -15.03 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.24 -8.48 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125326042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.878 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds