Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 H 1.09005 * 109.47238 * 182.45811 * 3 2 1 5 5 C 1.53004 * 109.47352 * 62.45989 * 3 2 1 6 6 C 1.50701 * 109.47084 * 64.99639 * 5 3 2 7 7 O 1.21295 * 120.00104 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00238 * 180.02562 * 6 5 3 9 9 C 1.37090 * 120.00364 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99892 * 223.98721 * 9 8 6 11 11 C 1.38950 * 120.00066 * 43.98281 * 9 8 6 12 12 N 1.31409 * 120.00054 * 18.96724 * 11 9 8 13 13 Si 1.86802 * 120.00138 * 198.97171 * 11 9 8 14 14 H 1.48500 * 109.46871 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47238 * 119.99733 * 13 11 9 16 16 H 1.48498 * 109.46951 * 240.00084 * 13 11 9 17 17 C 1.46505 * 119.99691 * 0.02562 * 8 6 5 18 18 C 1.54261 * 110.03274 * 239.01030 * 17 8 6 19 19 C 1.54961 * 104.16080 * 217.13817 * 18 17 8 20 20 C 1.54893 * 102.77859 * 37.88506 * 19 18 17 21 21 C 1.53877 * 110.03167 * 121.79013 * 17 8 6 22 22 C 1.53000 * 109.47593 * 302.45686 * 3 2 1 23 23 C 1.52996 * 109.47628 * 185.01081 * 22 3 2 24 24 C 1.52997 * 109.47251 * 305.01564 * 22 3 2 25 25 H 1.08996 * 109.47482 * 58.95819 * 1 2 3 26 26 H 1.09003 * 109.46969 * 298.95924 * 1 2 3 27 27 H 1.09002 * 109.47579 * 178.95939 * 1 2 3 28 28 H 1.08997 * 109.47277 * 120.00016 * 2 1 3 29 29 H 1.09008 * 109.47199 * 240.00160 * 2 1 3 30 30 H 1.08996 * 109.47382 * 185.00012 * 5 3 2 31 31 H 1.09000 * 109.46732 * 305.00349 * 5 3 2 32 32 H 0.97002 * 120.00264 * 184.89263 * 12 11 9 33 33 H 1.09002 * 110.01844 * 0.39834 * 17 8 6 34 34 H 1.09003 * 110.48772 * 335.78355 * 18 17 8 35 35 H 1.09001 * 110.48969 * 98.42777 * 18 17 8 36 36 H 1.09001 * 110.72077 * 279.57523 * 19 18 17 37 37 H 1.09006 * 110.92485 * 156.29448 * 19 18 17 38 38 H 1.08999 * 110.48829 * 203.40167 * 20 19 18 39 39 H 1.09000 * 110.59289 * 80.81941 * 20 19 18 40 40 H 1.08998 * 110.03478 * 238.56993 * 21 17 8 41 41 H 1.09003 * 110.02925 * 359.95329 * 21 17 8 42 42 H 1.09011 * 109.46487 * 65.00858 * 22 3 2 43 43 H 1.08996 * 109.47278 * 180.02562 * 23 22 3 44 44 H 1.09002 * 109.46941 * 299.99812 * 23 22 3 45 45 H 1.08998 * 109.47268 * 60.00030 * 23 22 3 46 46 H 1.09001 * 109.47165 * 66.18831 * 24 22 3 47 47 H 1.08991 * 109.47337 * 186.19523 * 24 22 3 48 48 H 1.09001 * 109.46865 * 306.19884 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1291 1.4428 -0.0441 5 6 1.5811 2.1457 1.2791 6 6 2.2309 1.4930 2.4719 7 8 2.9870 0.5577 2.3145 8 7 1.9720 1.9485 3.7136 9 6 2.5635 1.3551 4.7987 10 1 1.9798 1.1400 5.6815 11 6 3.9141 1.0304 4.7627 12 7 4.7042 1.6030 3.8825 13 14 4.6065 -0.2200 5.9653 14 1 3.5183 -0.7143 6.8467 15 1 5.1909 -1.3593 5.2131 16 1 5.6607 0.4199 6.7925 17 6 1.0583 3.0778 3.9038 18 6 1.7877 4.2328 4.6204 19 6 0.7135 4.8334 5.5620 20 6 -0.0510 3.5792 6.0536 21 6 -0.1106 2.6625 4.8143 22 6 1.4801 2.1814 -1.2171 23 6 2.0877 3.5839 -1.2863 24 6 1.8336 1.4092 -2.4897 25 1 -0.3634 0.5299 -0.8804 26 1 -0.3633 0.4976 0.8992 27 1 -0.3634 -1.0275 -0.0187 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8678 3.1965 1.2388 31 1 0.4975 2.0677 1.3678 32 1 5.6308 1.3254 3.8096 33 1 0.6786 3.4170 2.9400 34 1 2.6306 3.8521 5.1974 35 1 2.1235 4.9779 3.8991 36 1 0.0487 5.5003 5.0129 37 1 1.1773 5.3558 6.3988 38 1 -1.0563 3.8480 6.3781 39 1 0.4925 3.0917 6.8630 40 1 -1.0576 2.8009 4.2927 41 1 0.0015 1.6205 5.1139 42 1 0.3964 2.2588 -1.1283 43 1 1.6885 4.1104 -2.1531 44 1 1.8357 4.1341 -0.3797 45 1 3.1713 3.5065 -1.3751 46 1 1.3114 0.4524 -2.4910 47 1 1.5321 1.9888 -3.3621 48 1 2.9092 1.2359 -2.5226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125326042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -76.204482 kcal Electronic energy + Delta-G solvation = -24376.687014 eV Core-core repulsion = 21236.974335 eV Total energy + Delta-G solvation = -3139.712678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83868 -39.11745 -37.80594 -35.09884 -33.51772 -33.12036 -30.83180 -29.40616 -28.36436 -27.74704 -27.00911 -25.20518 -23.11644 -21.43396 -21.35911 -20.87226 -19.49663 -18.08485 -17.57704 -16.75598 -16.58743 -16.13428 -15.90436 -15.78855 -15.11907 -14.96844 -14.56897 -14.43096 -14.07170 -13.77943 -13.40566 -13.28488 -13.20170 -13.02324 -12.87274 -12.87037 -12.45345 -12.44329 -12.29741 -12.20429 -12.06875 -12.04152 -11.81709 -11.76112 -11.59216 -11.40814 -11.32747 -11.19211 -11.03847 -10.96841 -10.64250 -9.78375 -8.93790 -8.10747 -5.87749 1.34664 1.41219 1.48301 2.35159 2.58747 3.24107 3.32327 3.88956 3.92854 3.95929 3.97933 4.06498 4.22834 4.30080 4.47970 4.51683 4.57047 4.59494 4.72136 4.73027 4.77292 4.78594 4.85691 4.86374 4.87984 4.92891 4.96967 5.06475 5.11173 5.15335 5.18701 5.20937 5.23060 5.27762 5.31392 5.39717 5.41916 5.47498 5.53941 5.61883 5.62312 5.68100 5.72090 5.79034 6.31553 7.15916 7.36626 7.85985 8.52973 8.95442 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.006924 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.765053 B = 4042.818269 C = 5127.085381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.054 4.054 4 H 0.031 0.969 5 C -0.120 4.120 6 C 0.465 3.535 7 O -0.582 6.582 8 N -0.467 5.467 9 C -0.333 4.333 10 H 0.072 0.928 11 C 0.023 3.977 12 N -0.870 5.870 13 Si 0.951 3.049 14 H -0.260 1.260 15 H -0.298 1.298 16 H -0.279 1.279 17 C 0.121 3.879 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.252 0.748 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 6.207 -6.642 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.073 4.073 4 H 0.050 0.950 5 C -0.160 4.160 6 C 0.255 3.745 7 O -0.464 6.464 8 N -0.189 5.189 9 C -0.461 4.461 10 H 0.090 0.910 11 C -0.182 4.182 12 N -0.506 5.506 13 Si 0.777 3.223 14 H -0.184 1.184 15 H -0.225 1.225 16 H -0.205 1.205 17 C 0.017 3.983 18 C -0.164 4.164 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.165 4.165 22 C -0.104 4.104 23 C -0.205 4.205 24 C -0.201 4.201 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.487 5.794 -6.726 14.517 hybrid contribution 1.382 -0.915 0.810 1.845 sum -10.105 4.879 -5.916 12.685 Atomic orbital electron populations 1.21804 0.94623 1.01572 1.02021 1.21561 0.96880 0.96362 1.01062 1.20790 0.98289 0.94990 0.93228 0.95013 1.21699 1.01235 0.99942 0.93079 1.20899 0.83782 0.84718 0.85125 1.90440 1.38686 1.31762 1.85487 1.43691 1.41981 1.28342 1.04873 1.18972 0.91116 1.39793 0.96192 0.91030 1.25836 0.96439 0.97984 0.97916 1.69997 1.05310 1.38294 1.37003 0.85550 0.78555 0.79384 0.78782 1.18380 1.22536 1.20545 1.21997 0.90408 0.87060 0.98842 1.22577 0.98674 0.96503 0.98642 1.22414 0.96797 0.97035 0.98509 1.22247 1.00602 0.95570 0.96698 1.22420 0.97699 0.99475 0.96903 1.21160 1.00830 0.94760 0.93653 1.21895 1.00169 0.96360 1.02104 1.21847 1.00851 1.00495 0.96861 0.90483 0.93547 0.92924 0.94174 0.92104 0.90323 0.88558 0.93881 0.89477 0.93750 0.92726 0.89511 0.91512 0.89587 0.93553 0.89856 0.93598 0.89445 0.90775 0.92885 0.94332 0.92074 0.91105 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.13 71.98 0.66 -3.26 16 2 C -0.12 -4.23 4.93 30.59 0.15 -4.08 16 3 C -0.05 -1.89 1.40 -10.79 -0.02 -1.90 16 4 H 0.03 1.36 7.96 -2.38 -0.02 1.34 16 5 C -0.12 -4.48 3.18 29.85 0.09 -4.39 16 6 C 0.47 23.51 6.67 87.66 0.58 24.10 16 7 O -0.58 -34.80 11.74 -3.08 -0.04 -34.84 16 8 N -0.47 -23.09 2.45 -609.38 -1.49 -24.58 16 9 C -0.33 -18.41 7.41 84.04 0.62 -17.79 16 10 H 0.07 3.90 7.12 -2.91 -0.02 3.88 16 11 C 0.02 1.36 4.36 84.93 0.37 1.73 16 12 N -0.87 -53.80 11.77 21.66 0.26 -53.54 16 13 Si 0.95 47.10 29.60 68.60 2.03 49.13 16 14 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 C 0.12 4.60 3.20 45.71 0.15 4.75 16 18 C -0.13 -4.65 6.42 31.69 0.20 -4.45 16 19 C -0.11 -3.01 6.91 31.91 0.22 -2.79 16 20 C -0.11 -3.20 6.83 31.67 0.22 -2.98 16 21 C -0.13 -4.11 6.20 31.32 0.19 -3.92 16 22 C -0.09 -2.17 1.94 -10.80 -0.02 -2.19 16 23 C -0.15 -3.59 8.95 71.98 0.64 -2.95 16 24 C -0.14 -3.22 8.45 71.98 0.61 -2.61 16 25 H 0.08 1.68 6.14 -2.39 -0.01 1.67 16 26 H 0.05 1.33 6.44 -2.39 -0.02 1.31 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.80 5.91 -2.39 -0.01 1.78 16 29 H 0.06 1.94 6.64 -2.38 -0.02 1.93 16 30 H 0.08 2.83 6.01 -2.39 -0.01 2.82 16 31 H 0.10 3.10 5.92 -2.39 -0.01 3.09 16 32 H 0.25 15.31 8.32 -92.71 -0.77 14.54 16 33 H 0.09 2.90 5.82 -2.39 -0.01 2.89 16 34 H 0.04 2.05 7.08 -2.39 -0.02 2.04 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.75 6.89 -2.39 -0.02 1.74 16 42 H 0.09 1.91 6.65 -2.38 -0.02 1.90 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.32 6.46 -2.39 -0.02 1.30 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.31 6.44 -2.39 -0.02 1.30 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.19 352.19 6.35 -64.84 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.91 Total: 21.71 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.68 Total: -22.72 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.24 Total: -78.12 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.84 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -71.19 6.35 -64.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125326042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.364 kcal (2) G-P(sol) polarization free energy of solvation -71.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds