Wall clock time and date at job start Tue Mar 31 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 N 1.46498 * 109.46948 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00096 * 264.74721 * 4 3 2 6 6 H 1.08003 * 119.99870 * 146.16471 * 5 4 3 7 7 C 1.38949 * 120.00185 * 326.17039 * 5 4 3 8 8 N 1.31415 * 119.99569 * 337.67804 * 7 5 4 9 9 Si 1.86793 * 120.00254 * 157.67565 * 7 5 4 10 10 H 1.48502 * 109.47108 * 89.99910 * 9 7 5 11 11 H 1.48505 * 109.47209 * 210.00005 * 9 7 5 12 12 H 1.48503 * 109.47440 * 329.99859 * 9 7 5 13 13 C 1.34780 * 120.00262 * 84.74823 * 4 3 2 14 14 O 1.21286 * 120.00272 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99641 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.47078 * 179.97438 * 15 13 4 17 17 H 1.09005 * 109.47385 * 305.00402 * 16 15 13 18 18 C 1.53002 * 109.47177 * 65.00192 * 16 15 13 19 19 C 1.52998 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47440 * 299.99783 * 19 18 16 21 21 C 1.53002 * 109.46758 * 59.99961 * 20 19 18 22 22 C 1.52989 * 109.47367 * 300.00137 * 21 20 19 23 23 C 1.52999 * 109.47441 * 299.99948 * 22 21 20 24 24 C 1.53007 * 109.47357 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47163 * 300.00113 * 1 2 3 27 27 H 1.09004 * 109.46815 * 60.00111 * 1 2 3 28 28 H 1.09005 * 109.46906 * 239.99978 * 2 1 3 29 29 H 1.08996 * 109.47117 * 119.99993 * 2 1 3 30 30 H 1.09004 * 109.47229 * 299.99636 * 3 2 1 31 31 H 1.08991 * 109.47237 * 59.99932 * 3 2 1 32 32 H 0.97001 * 119.99527 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47680 * 300.00172 * 15 13 4 34 34 H 1.09005 * 109.47004 * 60.00574 * 15 13 4 35 35 H 1.08999 * 109.47030 * 300.00528 * 18 16 15 36 36 H 1.09005 * 109.46791 * 59.99847 * 18 16 15 37 37 H 1.08993 * 109.47238 * 60.00524 * 19 18 16 38 38 H 1.09006 * 109.46905 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47344 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.47181 * 300.00553 * 20 19 18 41 41 H 1.09005 * 109.46791 * 60.00353 * 21 20 19 42 42 H 1.08999 * 109.47030 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.47265 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46721 * 299.99840 * 23 22 21 45 45 H 1.09000 * 109.46906 * 59.99954 * 23 22 21 46 46 H 1.08997 * 109.46921 * 300.00599 * 24 22 21 47 47 H 1.09003 * 109.46367 * 59.99948 * 24 22 21 48 48 H 1.08997 * 109.47203 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5510 1.1814 6 1 5.1339 1.0396 1.3074 7 6 3.6732 2.3188 2.2173 8 7 2.8018 3.2681 1.9593 9 14 4.2155 2.0016 3.9764 10 1 5.4052 2.8349 4.2855 11 1 3.1112 2.3514 4.9056 12 1 4.5613 0.5663 4.1367 13 6 4.1785 1.3358 -1.1632 14 8 5.3913 1.3353 -1.1637 15 6 3.4244 1.2160 -2.4625 16 6 4.4181 1.1105 -3.6210 17 1 5.1017 1.9590 -3.5919 18 6 5.2139 -0.1901 -3.4935 19 6 6.2072 -0.2959 -4.6524 20 6 5.4453 -0.2923 -5.9791 21 6 4.6495 1.0082 -6.1067 22 6 3.6562 1.1141 -4.9479 23 6 2.6967 -0.0770 -4.9881 24 6 2.8608 2.4149 -5.0750 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.4406 3.8043 2.6824 33 1 2.7980 0.3243 -2.4382 34 1 2.7974 2.0968 -2.6012 35 1 5.7563 -0.1929 -2.5481 36 1 4.5303 -1.0386 -3.5227 37 1 6.8908 0.5525 -4.6236 38 1 6.7738 -1.2227 -4.5618 39 1 6.1529 -0.3682 -6.8047 40 1 4.7616 -1.1409 -6.0079 41 1 5.3331 1.8567 -6.0780 42 1 4.1070 1.0110 -7.0521 43 1 1.9887 -0.0013 -4.1628 44 1 2.1538 -0.0743 -5.9334 45 1 3.2636 -1.0035 -4.8972 46 1 3.5447 3.2632 -5.0461 47 1 2.3180 2.4179 -6.0203 48 1 2.1529 2.4901 -4.2497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160235149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:13 Heat of formation + Delta-G solvation = -71.080414 kcal Electronic energy + Delta-G solvation = -24208.902104 eV Core-core repulsion = 21069.411622 eV Total energy + Delta-G solvation = -3139.490482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92802 -38.09300 -35.21850 -33.22649 -32.78801 -31.63609 -31.11227 -27.71637 -27.13207 -25.96153 -25.39078 -24.07074 -21.76822 -20.90641 -20.67626 -18.66920 -17.78276 -16.79344 -16.05853 -15.02133 -14.88615 -14.67434 -14.39888 -14.08818 -13.96902 -13.73750 -13.41140 -13.18959 -12.77085 -12.68571 -12.22130 -12.06416 -11.72890 -11.67378 -11.46395 -11.42996 -11.36826 -11.21692 -11.10558 -10.94941 -10.88087 -10.71247 -10.61219 -10.40248 -10.28356 -10.12735 -9.90332 -9.78626 -9.57851 -9.52677 -8.86134 -8.18001 -7.39333 -6.27535 -3.87399 3.19587 3.28224 3.33915 4.01931 4.20359 4.79133 4.86365 4.89834 5.03855 5.15064 5.30536 5.42449 5.52809 5.54868 5.61112 5.67044 5.70456 5.77222 5.81996 5.84173 5.86817 5.92825 5.97550 6.05690 6.11585 6.14256 6.18036 6.24067 6.26369 6.32771 6.35064 6.40953 6.43053 6.46597 6.51956 6.55767 6.63063 6.66725 6.73993 6.97426 6.97997 7.05685 7.34585 7.64987 8.32211 8.59513 9.27625 9.51368 10.12699 10.76164 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.005168 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.552740 B = 5416.885308 C = 6014.269579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.103 3.897 4 N -0.445 5.445 5 C -0.304 4.304 6 H 0.090 0.910 7 C 0.034 3.966 8 N -0.871 5.871 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.459 3.541 14 O -0.581 6.581 15 C -0.133 4.133 16 C -0.052 4.052 17 H 0.072 0.928 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.061 4.061 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -5.434 -12.210 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.022 4.022 4 N -0.163 5.163 5 C -0.432 4.432 6 H 0.108 0.892 7 C -0.169 4.169 8 N -0.510 5.510 9 Si 0.740 3.260 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.465 6.465 15 C -0.173 4.173 16 C -0.071 4.071 17 H 0.091 0.909 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.061 4.061 23 C -0.202 4.202 24 C -0.201 4.201 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.339 -5.283 -12.077 13.598 hybrid contribution -0.018 0.016 0.901 0.902 sum -3.356 -5.267 -11.175 12.802 Atomic orbital electron populations 1.21675 0.96449 1.00585 1.01521 1.21977 0.94785 0.99512 1.01579 1.21627 0.82251 0.94303 1.03978 1.43534 1.04489 1.63269 1.05042 1.19419 1.06583 1.28170 0.89060 0.89233 1.25288 0.97428 0.93843 1.00356 1.69929 1.31246 1.17081 1.32711 0.86147 0.78245 0.79068 0.82525 1.20390 1.20883 1.19497 1.20377 0.88122 0.81809 0.84928 1.90461 1.14201 1.54965 1.86847 1.21800 0.98880 1.02481 0.94094 1.20805 0.95860 0.98981 0.91440 0.90932 1.21727 0.97816 0.96516 0.99614 1.21501 0.98093 1.01146 0.94603 1.21586 0.98706 0.97968 0.97460 1.21555 0.97567 0.97842 0.97308 1.20556 0.95056 0.95177 0.95324 1.22008 0.98902 0.98211 1.01060 1.21940 1.00009 0.96979 1.01219 0.93533 0.92772 0.93214 0.93232 0.91856 0.93629 0.86975 0.92392 0.90563 0.90316 0.89389 0.93027 0.92245 0.92797 0.92878 0.92049 0.92192 0.92610 0.92458 0.93448 0.92133 0.92767 0.93253 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.14 -2.54 6.17 -26.73 -0.16 -2.71 16 3 C 0.10 2.23 4.72 -4.04 -0.02 2.21 16 4 N -0.44 -11.23 2.56 -114.82 -0.29 -11.53 16 5 C -0.30 -8.47 8.98 -14.93 -0.13 -8.61 16 6 H 0.09 2.62 7.70 -52.48 -0.40 2.22 16 7 C 0.03 0.91 4.92 -17.47 -0.09 0.82 16 8 N -0.87 -23.55 11.33 55.50 0.63 -22.92 16 9 Si 0.91 20.75 29.61 -169.99 -5.03 15.72 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 11.08 7.31 -10.98 -0.08 11.00 16 14 O -0.58 -15.81 13.79 5.55 0.08 -15.73 16 15 C -0.13 -2.44 3.06 -27.88 -0.09 -2.52 16 16 C -0.05 -0.86 1.14 -90.62 -0.10 -0.96 16 17 H 0.07 1.37 7.96 -51.93 -0.41 0.96 16 18 C -0.12 -1.97 4.67 -26.73 -0.12 -2.09 16 19 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 20 C -0.12 -1.41 5.65 -26.73 -0.15 -1.56 16 21 C -0.11 -1.25 4.73 -26.74 -0.13 -1.38 16 22 C -0.06 -0.80 0.54 -154.51 -0.08 -0.88 16 23 C -0.14 -1.74 7.43 37.16 0.28 -1.46 16 24 C -0.14 -1.81 8.13 37.16 0.30 -1.51 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.86 6.59 -51.93 -0.34 0.51 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 31 H 0.11 2.71 5.34 -51.93 -0.28 2.43 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.08 1.30 5.10 -51.93 -0.26 1.03 16 34 H 0.08 1.41 5.44 -51.93 -0.28 1.12 16 35 H 0.09 1.78 5.95 -51.93 -0.31 1.47 16 36 H 0.05 0.80 6.43 -51.93 -0.33 0.46 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -29.42 349.16 -8.16 -37.58 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.43 Total: 4.79 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.37 Total: -13.17 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.34 Total: -34.45 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.42 -8.16 -37.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160235149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.498 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds