Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47078 * 2 1 4 4 H 1.09001 * 109.47668 * 55.00386 * 3 2 1 5 5 C 1.50700 * 109.46913 * 174.99957 * 3 2 1 6 6 H 1.08002 * 120.00266 * 120.00088 * 5 3 2 7 7 C 1.37874 * 120.00400 * 299.99785 * 5 3 2 8 8 N 1.31519 * 119.99789 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00405 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47051 * 60.00126 * 9 7 5 11 11 H 1.48497 * 109.47237 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46881 * 300.00353 * 9 7 5 13 13 N 1.46495 * 109.47381 * 294.99689 * 3 2 1 14 14 C 1.34775 * 119.99823 * 85.00260 * 13 3 2 15 15 O 1.21288 * 119.99836 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00539 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.46716 * 300.00160 * 16 14 13 18 18 C 1.53003 * 109.46509 * 59.99797 * 16 14 13 19 19 C 1.53004 * 109.46516 * 185.91711 * 18 16 14 20 20 C 1.52998 * 109.47633 * 179.97438 * 16 14 13 21 21 C 1.53002 * 109.46845 * 66.54266 * 20 16 14 22 22 C 1.54266 * 110.48166 * 185.42900 * 21 20 16 23 23 C 1.53881 * 106.63921 * 217.73555 * 22 21 20 24 24 C 1.54264 * 106.59928 * 359.97438 * 23 22 21 25 25 C 1.54892 * 104.19599 * 23.60330 * 24 23 22 26 26 H 1.08992 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47163 * 299.99986 * 1 2 3 28 28 H 1.08999 * 109.47085 * 59.99619 * 1 2 3 29 29 H 1.09001 * 109.47030 * 239.99733 * 2 1 3 30 30 H 1.09005 * 109.46693 * 120.00187 * 2 1 3 31 31 H 0.97000 * 120.00318 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00423 * 265.00090 * 13 3 2 33 33 H 1.08994 * 109.47418 * 305.91212 * 18 16 14 34 34 H 1.08996 * 109.47172 * 65.92073 * 18 16 14 35 35 H 1.09006 * 109.47214 * 294.61493 * 19 18 16 36 36 H 1.09000 * 109.47712 * 54.61667 * 19 18 16 37 37 H 1.09000 * 109.46786 * 174.62133 * 19 18 16 38 38 H 1.09002 * 109.46950 * 306.54750 * 20 16 14 39 39 H 1.08996 * 109.47272 * 186.54826 * 20 16 14 40 40 H 1.08992 * 110.54408 * 308.04736 * 21 20 16 41 41 H 1.09003 * 110.03058 * 98.43724 * 22 21 20 42 42 H 1.08991 * 110.03830 * 337.05190 * 22 21 20 43 43 H 1.09004 * 110.02868 * 119.26273 * 23 22 21 44 44 H 1.08991 * 110.03546 * 240.69434 * 23 22 21 45 45 H 1.09001 * 110.48721 * 142.28495 * 24 23 22 46 46 H 1.08995 * 110.48225 * 264.92958 * 24 23 22 47 47 H 1.09005 * 110.75507 * 80.37438 * 25 24 23 48 48 H 1.09000 * 110.75486 * 203.55781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.5006 2.2798 1.3807 11 1 6.3979 0.2156 2.6498 12 1 6.5966 0.1451 0.2343 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3377 -2.6548 17 1 0.7277 4.1529 -2.8678 18 6 0.0798 2.3204 -3.7968 19 6 -0.1808 3.0336 -5.1251 20 6 -1.3829 3.8936 -2.5214 21 6 -1.3926 5.0255 -1.4921 22 6 -2.8342 5.5126 -1.2389 23 6 -2.7592 7.0397 -1.0647 24 6 -1.2741 7.4282 -1.2174 25 6 -0.6631 6.2737 -2.0498 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0619 2.9495 32 1 2.2720 2.1231 -1.9977 33 1 1.0614 1.8474 -3.8249 34 1 -0.6852 1.5608 -3.6361 35 1 -1.1982 3.4249 -5.1340 36 1 0.5256 3.8556 -5.2410 37 1 -0.0557 2.3283 -5.9468 38 1 -2.0548 3.0998 -2.1949 39 1 -1.7152 4.2769 -3.4862 40 1 -0.9309 4.6991 -0.5603 41 1 -3.2301 5.0527 -0.3334 42 1 -3.4673 5.2646 -2.0907 43 1 -3.3551 7.5328 -1.8328 44 1 -3.1187 7.3207 -0.0749 45 1 -1.1802 8.3743 -1.7506 46 1 -0.7938 7.4902 -0.2410 47 1 -0.8797 6.4052 -3.1100 48 1 0.4117 6.2037 -1.8825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183796922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -86.558034 kcal Electronic energy + Delta-G solvation = -23623.993437 eV Core-core repulsion = 20483.831795 eV Total energy + Delta-G solvation = -3140.161642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.65555 -37.87012 -35.41761 -34.67669 -32.30080 -30.86004 -30.75127 -28.59478 -27.67232 -26.54777 -23.96675 -22.89522 -21.63242 -20.52469 -19.71879 -19.51942 -19.04839 -17.03833 -16.01916 -15.54904 -15.38505 -15.10046 -14.37321 -14.21723 -14.11559 -13.55008 -13.42930 -13.21928 -12.84559 -12.59773 -12.29385 -11.96701 -11.82659 -11.50036 -11.45496 -11.23855 -11.17201 -11.09174 -10.96939 -10.94028 -10.80223 -10.76842 -10.46907 -10.31471 -10.22281 -10.14193 -10.08557 -10.04854 -9.57464 -9.01444 -8.70447 -8.45612 -7.71566 -6.09622 -4.18907 3.26376 3.31854 3.32900 3.52432 4.18763 4.42715 4.67729 4.76690 4.85629 5.03929 5.09323 5.19179 5.22255 5.45864 5.48004 5.54564 5.62754 5.72680 5.74045 5.78918 5.80784 5.90540 5.92127 5.95440 6.01835 6.08894 6.16819 6.20265 6.27015 6.32050 6.39913 6.42687 6.46163 6.50032 6.59589 6.70130 6.84088 7.08374 7.24400 7.41976 7.54908 7.65778 7.78861 7.95120 8.22526 8.76242 8.83138 9.25363 9.49369 10.95528 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004550 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.801001 B = 6152.738857 C = 6545.252640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.710 5.710 14 C 0.505 3.495 15 O -0.546 6.546 16 C -0.111 4.111 17 H 0.089 0.911 18 C -0.116 4.116 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.095 4.095 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.122 4.122 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 8.575 -11.581 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.290 3.710 15 O -0.425 6.425 16 C -0.133 4.133 17 H 0.107 0.893 18 C -0.154 4.154 19 C -0.207 4.207 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.159 4.159 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.951 8.436 -10.689 16.295 hybrid contribution 1.380 -0.068 -0.229 1.400 sum -7.571 8.368 -10.918 15.701 Atomic orbital electron populations 1.21831 0.98367 0.97859 1.01273 1.21920 0.92593 0.99941 1.02092 1.18720 0.93974 0.89106 0.81262 0.93470 1.21215 0.90895 1.38928 1.06176 0.92277 1.24877 0.98459 0.94863 0.95423 1.69888 1.35138 1.37617 1.09358 0.86546 0.85071 0.78277 0.77425 1.20229 1.21155 1.20203 1.46509 1.14870 1.56121 1.18267 1.20341 0.82545 0.79109 0.89015 1.90631 1.51429 1.59699 1.40730 1.21465 0.99125 0.98600 0.94087 0.89315 1.21493 1.02570 0.97702 0.93596 1.21813 1.01702 1.00424 0.96765 1.21417 0.94987 0.97912 0.98104 1.22144 0.95167 0.93768 1.00265 1.22148 0.97298 0.94799 1.01292 1.22120 0.96647 0.96341 1.01001 1.22338 0.95681 0.97993 1.00242 1.22613 0.99598 0.94808 0.98914 0.96080 0.93228 0.94150 0.95206 0.88458 0.92575 0.78210 0.91434 0.91608 0.92564 0.92685 0.92846 0.91391 0.91990 0.88661 0.91995 0.92363 0.92424 0.92308 0.92271 0.91746 0.91971 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.78 2.24 -69.09 -0.15 6.62 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.46 4.88 -54.94 -0.27 -14.72 16 14 C 0.50 9.58 5.38 -10.98 -0.06 9.52 16 15 O -0.55 -12.11 11.27 5.55 0.06 -12.05 16 16 C -0.11 -1.56 2.13 -91.77 -0.20 -1.76 16 17 H 0.09 1.17 7.32 -51.93 -0.38 0.79 16 18 C -0.12 -1.42 5.34 -26.73 -0.14 -1.56 16 19 C -0.15 -1.45 9.56 37.16 0.36 -1.10 16 20 C -0.09 -1.15 3.57 -26.73 -0.10 -1.25 16 21 C -0.10 -1.32 2.61 -88.92 -0.23 -1.55 16 22 C -0.12 -1.45 6.37 -25.61 -0.16 -1.62 16 23 C -0.12 -1.35 6.80 -25.61 -0.17 -1.52 16 24 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 25 C -0.12 -1.47 5.66 -24.70 -0.14 -1.61 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.19 7.85 -51.92 -0.41 0.78 16 28 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 6.97 7.89 -40.82 -0.32 6.65 16 33 H 0.07 0.84 7.40 -51.93 -0.38 0.45 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.52 6.72 -51.93 -0.35 0.17 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 39 H 0.06 0.69 6.30 -51.93 -0.33 0.37 16 40 H 0.10 1.68 6.10 -51.93 -0.32 1.36 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 48 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -28.52 360.63 -9.46 -37.97 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.89 Total: 7.91 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.40 Total: -16.01 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.36 Total: -38.88 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.52 -9.46 -37.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183796922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.583 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds