Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47078 * 2 1 4 4 H 1.09001 * 109.47668 * 55.00386 * 3 2 1 5 5 C 1.50700 * 109.46913 * 174.99957 * 3 2 1 6 6 H 1.08002 * 120.00266 * 120.00088 * 5 3 2 7 7 C 1.37874 * 120.00400 * 299.99785 * 5 3 2 8 8 N 1.31519 * 119.99789 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00405 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47051 * 60.00126 * 9 7 5 11 11 H 1.48497 * 109.47237 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46881 * 300.00353 * 9 7 5 13 13 N 1.46495 * 109.47381 * 294.99689 * 3 2 1 14 14 C 1.34775 * 119.99823 * 85.00260 * 13 3 2 15 15 O 1.21288 * 119.99836 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00539 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.46716 * 300.00160 * 16 14 13 18 18 C 1.53003 * 109.46509 * 59.99797 * 16 14 13 19 19 C 1.53004 * 109.46516 * 185.91711 * 18 16 14 20 20 C 1.52998 * 109.47633 * 179.97438 * 16 14 13 21 21 C 1.53002 * 109.46845 * 66.54266 * 20 16 14 22 22 C 1.54266 * 110.48166 * 185.42900 * 21 20 16 23 23 C 1.53881 * 106.63921 * 217.73555 * 22 21 20 24 24 C 1.54264 * 106.59928 * 359.97438 * 23 22 21 25 25 C 1.54892 * 104.19599 * 23.60330 * 24 23 22 26 26 H 1.08992 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47163 * 299.99986 * 1 2 3 28 28 H 1.08999 * 109.47085 * 59.99619 * 1 2 3 29 29 H 1.09001 * 109.47030 * 239.99733 * 2 1 3 30 30 H 1.09005 * 109.46693 * 120.00187 * 2 1 3 31 31 H 0.97000 * 120.00318 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00423 * 265.00090 * 13 3 2 33 33 H 1.08994 * 109.47418 * 305.91212 * 18 16 14 34 34 H 1.08996 * 109.47172 * 65.92073 * 18 16 14 35 35 H 1.09006 * 109.47214 * 294.61493 * 19 18 16 36 36 H 1.09000 * 109.47712 * 54.61667 * 19 18 16 37 37 H 1.09000 * 109.46786 * 174.62133 * 19 18 16 38 38 H 1.09002 * 109.46950 * 306.54750 * 20 16 14 39 39 H 1.08996 * 109.47272 * 186.54826 * 20 16 14 40 40 H 1.08992 * 110.54408 * 308.04736 * 21 20 16 41 41 H 1.09003 * 110.03058 * 98.43724 * 22 21 20 42 42 H 1.08991 * 110.03830 * 337.05190 * 22 21 20 43 43 H 1.09004 * 110.02868 * 119.26273 * 23 22 21 44 44 H 1.08991 * 110.03546 * 240.69434 * 23 22 21 45 45 H 1.09001 * 110.48721 * 142.28495 * 24 23 22 46 46 H 1.08995 * 110.48225 * 264.92958 * 24 23 22 47 47 H 1.09005 * 110.75507 * 80.37438 * 25 24 23 48 48 H 1.09000 * 110.75486 * 203.55781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.5006 2.2798 1.3807 11 1 6.3979 0.2156 2.6498 12 1 6.5966 0.1451 0.2343 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3377 -2.6548 17 1 0.7277 4.1529 -2.8678 18 6 0.0798 2.3204 -3.7968 19 6 -0.1808 3.0336 -5.1251 20 6 -1.3829 3.8936 -2.5214 21 6 -1.3926 5.0255 -1.4921 22 6 -2.8342 5.5126 -1.2389 23 6 -2.7592 7.0397 -1.0647 24 6 -1.2741 7.4282 -1.2174 25 6 -0.6631 6.2737 -2.0498 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0619 2.9495 32 1 2.2720 2.1231 -1.9977 33 1 1.0614 1.8474 -3.8249 34 1 -0.6852 1.5608 -3.6361 35 1 -1.1982 3.4249 -5.1340 36 1 0.5256 3.8556 -5.2410 37 1 -0.0557 2.3283 -5.9468 38 1 -2.0548 3.0998 -2.1949 39 1 -1.7152 4.2769 -3.4862 40 1 -0.9309 4.6991 -0.5603 41 1 -3.2301 5.0527 -0.3334 42 1 -3.4673 5.2646 -2.0907 43 1 -3.3551 7.5328 -1.8328 44 1 -3.1187 7.3207 -0.0749 45 1 -1.1802 8.3743 -1.7506 46 1 -0.7938 7.4902 -0.2410 47 1 -0.8797 6.4052 -3.1100 48 1 0.4117 6.2037 -1.8825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183796922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -101.401318 kcal Electronic energy + Delta-G solvation = -23624.637090 eV Core-core repulsion = 20483.831795 eV Total energy + Delta-G solvation = -3140.805295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10391 -39.05030 -37.00478 -36.07325 -34.22893 -32.69214 -31.75349 -29.55846 -29.23536 -28.00671 -25.33464 -24.54096 -22.91884 -21.70634 -21.24577 -20.64320 -20.57949 -18.73705 -17.58143 -17.15226 -16.65234 -16.40126 -16.05877 -15.78492 -15.20092 -14.74194 -14.61324 -14.55445 -14.17620 -13.99855 -13.84046 -13.42852 -13.16937 -12.97698 -12.83763 -12.80452 -12.70740 -12.61036 -12.20132 -12.16589 -12.03502 -12.00782 -11.87438 -11.72056 -11.59416 -11.36903 -11.26574 -11.17662 -11.12306 -11.02083 -10.54025 -10.24886 -9.51552 -8.15272 -6.32754 1.43849 1.45603 1.53372 1.99936 2.37611 2.77109 3.13802 3.66084 3.79740 3.87011 3.96745 4.09954 4.13053 4.48365 4.51274 4.54156 4.57505 4.58993 4.62110 4.66161 4.76425 4.77865 4.80987 4.85141 4.94633 4.99345 5.00541 5.07742 5.12532 5.17336 5.24423 5.24891 5.26519 5.34320 5.36936 5.45385 5.48801 5.51212 5.57209 5.58293 5.65366 5.75150 5.81887 5.97914 6.19638 6.76423 7.10734 7.35410 7.71726 8.89668 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004550 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.801001 B = 6152.738857 C = 6545.252640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.099 4.099 17 H 0.105 0.895 18 C -0.113 4.113 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.117 4.117 26 H 0.042 0.958 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.399 0.601 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 9.701 -14.616 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.463 6.463 16 C -0.120 4.120 17 H 0.123 0.877 18 C -0.151 4.151 19 C -0.201 4.201 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.164 4.164 25 C -0.154 4.154 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.664 9.575 -13.763 18.872 hybrid contribution 1.239 -0.411 0.767 1.514 sum -7.425 9.164 -12.996 17.550 Atomic orbital electron populations 1.21656 0.97000 0.98900 1.00250 1.21763 0.93708 0.99335 1.01028 1.18268 0.93367 0.89024 0.81649 0.98867 1.21571 0.91644 1.38843 1.06604 0.91255 1.25762 1.03221 0.94406 0.95032 1.70050 1.37087 1.38386 1.09871 0.85458 0.79259 0.78420 0.77563 1.19711 1.21212 1.18886 1.46304 1.15943 1.56396 1.17173 1.21299 0.81402 0.78229 0.90426 1.90627 1.52314 1.60723 1.42593 1.21459 0.99878 0.99022 0.91621 0.87668 1.21499 1.02259 0.97138 0.94226 1.21777 1.02527 1.00742 0.95047 1.21413 0.93940 0.97086 0.99380 1.22060 0.96181 0.95007 0.98523 1.22147 0.96410 0.95912 1.01072 1.22118 0.96764 0.95141 1.01769 1.22359 0.95634 0.98756 0.99624 1.22595 0.98700 0.93846 1.00291 0.93860 0.95820 0.93529 0.94245 0.91279 0.92684 0.76632 0.91600 0.92560 0.91658 0.91631 0.91704 0.93442 0.88618 0.93413 0.93983 0.90650 0.90213 0.92473 0.90102 0.93388 0.89496 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.57 2.24 44.24 0.10 14.67 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -29.35 8.73 25.60 0.22 -29.12 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.10 11.29 21.45 0.24 -52.86 16 9 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.71 -29.38 4.88 -446.11 -2.17 -31.55 16 14 C 0.50 19.35 5.38 87.66 0.47 19.82 16 15 O -0.58 -27.23 11.27 -3.06 -0.03 -27.26 16 16 C -0.10 -2.65 2.13 -11.54 -0.02 -2.68 16 17 H 0.11 2.53 7.32 -2.39 -0.02 2.52 16 18 C -0.11 -2.52 5.34 30.60 0.16 -2.36 16 19 C -0.14 -2.24 9.56 71.98 0.69 -1.55 16 20 C -0.08 -2.04 3.57 30.59 0.11 -1.93 16 21 C -0.10 -2.73 2.61 -9.70 -0.03 -2.76 16 22 C -0.12 -2.83 6.37 31.32 0.20 -2.63 16 23 C -0.12 -2.42 6.80 31.32 0.21 -2.21 16 24 C -0.13 -2.63 6.83 31.67 0.22 -2.42 16 25 C -0.12 -2.60 5.66 31.91 0.18 -2.42 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.02 1.17 7.85 -2.38 -0.02 1.15 16 28 H 0.05 2.05 5.65 -2.39 -0.01 2.04 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.89 5.95 -2.38 -0.01 3.87 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 32 H 0.40 14.25 7.89 -92.71 -0.73 13.52 16 33 H 0.07 1.49 7.40 -2.39 -0.02 1.47 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.91 6.72 -2.38 -0.02 0.90 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.40 7.90 -2.39 -0.02 1.38 16 39 H 0.10 1.80 6.30 -2.39 -0.02 1.78 16 40 H 0.05 1.78 6.10 -2.39 -0.01 1.77 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.53 7.96 -2.38 -0.02 1.51 16 48 H 0.05 1.27 7.93 -2.39 -0.02 1.25 16 Total: -1.00 -65.08 360.63 3.98 -61.10 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.18 Total: 31.15 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.74 Total: -25.04 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.93 Total: -84.41 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.03 Total: -27.26 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -65.08 3.98 -61.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183796922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.305 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds