Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47311 * 2 1 4 4 H 1.09006 * 109.46752 * 305.00540 * 3 2 1 5 5 C 1.50696 * 109.47330 * 185.00116 * 3 2 1 6 6 H 1.07996 * 119.99935 * 240.00197 * 5 3 2 7 7 C 1.37884 * 119.99981 * 59.99703 * 5 3 2 8 8 N 1.31515 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99747 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46995 * 90.00532 * 9 7 5 11 11 H 1.48505 * 109.46765 * 210.00072 * 9 7 5 12 12 H 1.48488 * 109.47295 * 330.00224 * 9 7 5 13 13 N 1.46503 * 109.46993 * 64.99784 * 3 2 1 14 14 C 1.34770 * 119.99926 * 275.00402 * 13 3 2 15 15 O 1.21285 * 120.00369 * 0.02562 * 14 13 3 16 16 C 1.50710 * 119.99652 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47091 * 299.99807 * 16 14 13 18 18 C 1.52991 * 109.46923 * 60.00063 * 16 14 13 19 19 C 1.53002 * 109.47755 * 56.08963 * 18 16 14 20 20 C 1.53001 * 109.46843 * 179.97438 * 16 14 13 21 21 C 1.53000 * 109.46712 * 174.09371 * 20 16 14 22 22 C 1.54266 * 110.03501 * 292.52424 * 21 20 16 23 23 C 1.54889 * 104.19580 * 217.10484 * 22 21 20 24 24 C 1.54891 * 102.74815 * 37.94424 * 23 22 21 25 25 C 1.53878 * 110.03156 * 175.35671 * 21 20 16 26 26 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46956 * 299.99567 * 1 2 3 28 28 H 1.08997 * 109.47619 * 59.99991 * 1 2 3 29 29 H 1.09003 * 109.47293 * 239.99738 * 2 1 3 30 30 H 1.09007 * 109.47104 * 119.99989 * 2 1 3 31 31 H 0.97001 * 119.99411 * 179.97438 * 8 7 5 32 32 H 0.96997 * 119.99731 * 94.73029 * 13 3 2 33 33 H 1.09001 * 109.46780 * 176.09094 * 18 16 14 34 34 H 1.09005 * 109.47307 * 296.08544 * 18 16 14 35 35 H 1.08995 * 109.46932 * 305.02039 * 19 18 16 36 36 H 1.08997 * 109.46837 * 65.01687 * 19 18 16 37 37 H 1.09000 * 109.47351 * 185.02001 * 19 18 16 38 38 H 1.09001 * 109.47464 * 294.09624 * 20 16 14 39 39 H 1.09007 * 109.47157 * 54.09611 * 20 16 14 40 40 H 1.08999 * 110.01463 * 53.97256 * 21 20 16 41 41 H 1.08999 * 110.48565 * 335.78564 * 22 21 20 42 42 H 1.08997 * 110.48322 * 98.42688 * 22 21 20 43 43 H 1.08992 * 110.76060 * 279.63105 * 23 22 21 44 44 H 1.09000 * 110.91066 * 156.32817 * 23 22 21 45 45 H 1.08994 * 110.48683 * 203.37707 * 24 23 22 46 46 H 1.08999 * 110.48624 * 80.73312 * 24 23 22 47 47 H 1.09000 * 110.03386 * 238.57291 * 25 21 20 48 48 H 1.09004 * 110.03239 * 359.95523 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9223 -2.8174 12 1 6.5569 2.0737 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3396 2.6318 0.4344 16 6 0.0367 3.3386 2.6545 17 1 0.0681 2.6146 3.4686 18 6 1.0071 4.4833 2.9523 19 6 1.0358 5.4494 1.7662 20 6 -1.3822 3.8953 2.5208 21 6 -1.8421 4.4488 3.8710 22 6 -2.0147 3.2974 4.8831 23 6 -3.2555 3.7061 5.7153 24 6 -4.1833 4.3470 4.6534 25 6 -3.2210 5.1162 3.7250 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0604 -2.9503 32 1 2.2704 2.1197 1.9991 33 1 0.6791 5.0145 3.8457 34 1 2.0062 4.0793 3.1161 35 1 1.2772 4.9002 0.8561 36 1 0.0590 5.9207 1.6578 37 1 1.7916 6.2153 1.9396 38 1 -1.3908 4.6937 1.7787 39 1 -2.0567 3.0991 2.2057 40 1 -1.1159 5.1704 4.2453 41 1 -2.1968 2.3568 4.3633 42 1 -1.1359 3.2170 5.5228 43 1 -2.9848 4.4330 6.4809 44 1 -3.7279 2.8323 6.1641 45 1 -4.8871 5.0324 5.1256 46 1 -4.7156 3.5758 4.0966 47 1 -3.1641 6.1613 4.0293 48 1 -3.5621 5.0464 2.6920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183796939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -85.494514 kcal Electronic energy + Delta-G solvation = -23501.707434 eV Core-core repulsion = 20361.591909 eV Total energy + Delta-G solvation = -3140.115524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71822 -38.21085 -35.40578 -34.57508 -32.28320 -30.90986 -30.42831 -28.81079 -27.65827 -26.62445 -24.04063 -23.07396 -21.93031 -20.79957 -19.88213 -19.28872 -18.63988 -16.89872 -16.05920 -15.64379 -15.43091 -15.13060 -14.84193 -14.47562 -14.01438 -13.62638 -13.40044 -13.02163 -12.72831 -12.67770 -12.52930 -11.93229 -11.79054 -11.43958 -11.34064 -11.21604 -11.18766 -11.14409 -10.99911 -10.96802 -10.83276 -10.72275 -10.70062 -10.44825 -10.29775 -10.25917 -10.15023 -10.02323 -9.59251 -9.00544 -8.75422 -8.46079 -7.72278 -6.09734 -4.18753 3.25030 3.32112 3.34135 3.55253 4.15777 4.39712 4.52928 4.58522 4.73644 5.02820 5.12316 5.21679 5.25583 5.35366 5.37696 5.47412 5.52068 5.58247 5.59853 5.73012 5.77064 5.80689 5.87955 5.94536 5.98348 6.02104 6.13248 6.18003 6.24957 6.26491 6.36184 6.42335 6.48301 6.49565 6.51381 6.66865 6.70662 7.07938 7.24407 7.41902 7.54832 7.66118 7.78929 7.95263 8.22471 8.76711 8.83412 9.25576 9.49501 10.95512 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.003928 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.171782 B = 7127.046784 C = 7567.608043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.508 3.492 15 O -0.551 6.551 16 C -0.112 4.112 17 H 0.087 0.913 18 C -0.112 4.112 19 C -0.156 4.156 20 C -0.090 4.090 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 7.557 14.186 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.293 3.707 15 O -0.430 6.430 16 C -0.133 4.133 17 H 0.105 0.895 18 C -0.150 4.150 19 C -0.213 4.213 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.159 4.159 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.750 7.430 13.288 18.079 hybrid contribution 1.384 -0.125 0.241 1.410 sum -8.366 7.304 13.529 17.504 Atomic orbital electron populations 1.21829 0.98389 0.97879 1.01235 1.21934 0.92586 0.99994 1.02125 1.18729 0.94010 0.89077 0.81288 0.93470 1.21246 0.90868 1.38793 1.06157 0.92197 1.24887 0.98475 0.94905 0.95435 1.69900 1.35033 1.37726 1.09337 0.86485 0.85082 0.78407 0.77345 1.20594 1.21114 1.19893 1.46487 1.14905 1.56143 1.18198 1.20296 0.82536 0.78838 0.89056 1.90652 1.51496 1.60182 1.40713 1.21436 0.96857 0.97940 0.97104 0.89505 1.21492 0.98732 0.96003 0.98783 1.21842 1.01311 0.99219 0.98918 1.21508 0.94391 1.01013 0.95902 1.21868 0.96658 0.97032 0.95649 1.22480 0.97581 0.98621 0.97222 1.22491 0.96288 1.00017 0.97516 1.22353 0.97576 0.99314 0.97000 1.22210 0.94793 0.98895 1.00004 0.96023 0.94253 0.93213 0.88419 0.95184 0.92636 0.78208 0.91428 0.91660 0.91833 0.92642 0.93007 0.91191 0.91259 0.90916 0.91348 0.91866 0.91847 0.91944 0.92168 0.91731 0.92208 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.20 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.55 4.92 -54.93 -0.27 -14.82 16 14 C 0.51 9.77 4.19 -10.98 -0.05 9.73 16 15 O -0.55 -12.61 13.04 5.55 0.07 -12.54 16 16 C -0.11 -1.59 2.43 -91.77 -0.22 -1.81 16 17 H 0.09 1.12 7.33 -51.93 -0.38 0.74 16 18 C -0.11 -1.41 5.45 -26.73 -0.15 -1.55 16 19 C -0.16 -2.16 9.32 37.16 0.35 -1.81 16 20 C -0.09 -1.21 3.03 -26.73 -0.08 -1.29 16 21 C -0.09 -0.98 2.81 -89.50 -0.25 -1.24 16 22 C -0.12 -1.20 5.43 -25.07 -0.14 -1.34 16 23 C -0.13 -1.10 6.91 -24.74 -0.17 -1.27 16 24 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 25 C -0.12 -1.19 6.46 -25.61 -0.17 -1.35 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 7.01 8.04 -40.82 -0.33 6.68 16 33 H 0.07 0.70 6.32 -51.93 -0.33 0.38 16 34 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.06 1.10 6.92 -51.93 -0.36 0.74 16 36 H 0.05 0.72 6.66 -51.93 -0.35 0.38 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.01 6.37 -51.93 -0.33 0.68 16 39 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 40 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 41 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -28.95 358.39 -9.37 -38.32 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.75 Total: 7.46 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.42 Total: -15.27 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.36 Total: -39.01 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.95 -9.37 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183796939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.177 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds