Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47429 * 2 1 4 4 H 1.09000 * 109.47552 * 55.00014 * 3 2 1 5 5 C 1.50706 * 109.47446 * 175.00409 * 3 2 1 6 6 H 1.07992 * 120.00086 * 120.00017 * 5 3 2 7 7 C 1.37875 * 119.99436 * 299.99959 * 5 3 2 8 8 N 1.31517 * 119.99683 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00385 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47339 * 89.99939 * 9 7 5 11 11 H 1.48503 * 109.47217 * 210.00017 * 9 7 5 12 12 H 1.48500 * 109.47222 * 329.99796 * 9 7 5 13 13 N 1.46501 * 109.47004 * 295.00205 * 3 2 1 14 14 C 1.34782 * 120.00270 * 84.99984 * 13 3 2 15 15 O 1.21280 * 119.99222 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00377 * 180.02562 * 14 13 3 17 17 C 1.52989 * 109.47165 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47290 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47469 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46817 * 64.99892 * 19 18 17 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99697 * 19 18 17 25 25 H 1.08999 * 109.47305 * 59.99335 * 1 2 3 26 26 H 1.08992 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46579 * 300.00256 * 1 2 3 28 28 H 1.09004 * 109.46913 * 240.00172 * 2 1 3 29 29 H 1.08995 * 109.47723 * 120.00394 * 2 1 3 30 30 H 0.97001 * 120.00386 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00412 * 264.99772 * 13 3 2 32 32 H 1.08999 * 109.46957 * 59.99820 * 16 14 13 33 33 H 1.09006 * 109.46969 * 300.00343 * 16 14 13 34 34 H 1.08997 * 109.47705 * 59.99491 * 17 16 14 35 35 H 1.09006 * 109.47323 * 299.99962 * 17 16 14 36 36 H 1.09008 * 109.47149 * 59.99652 * 18 17 16 37 37 H 1.08997 * 109.47163 * 299.99722 * 18 17 16 38 38 H 1.09002 * 109.47070 * 305.00072 * 19 18 17 39 39 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 40 40 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 41 41 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 43 43 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 44 44 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 47 47 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 48 48 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1100 2.5706 10 1 2.8745 -1.3260 2.2645 11 1 3.7943 0.2359 3.8754 12 1 1.7883 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3395 2.6319 -0.4344 16 6 0.0362 3.3377 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 6 -1.7872 4.5788 -3.8282 19 6 -3.2062 5.1353 -3.6946 20 6 -3.2229 6.2408 -2.6371 21 6 -4.6416 6.7978 -2.5039 22 6 -5.0928 7.3714 -3.8487 23 6 -5.0761 6.2658 -4.9062 24 6 -3.6578 5.7088 -5.0392 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8772 0.4810 2.1122 31 1 2.2719 2.1232 -1.9979 32 1 0.0672 2.6130 -3.4684 33 1 0.7277 4.1530 -2.8680 34 1 -1.4130 4.6194 -1.7074 35 1 -2.0742 3.0797 -2.3076 36 1 -1.7566 3.8543 -4.6421 37 1 -1.0956 5.3938 -4.0411 38 1 -3.8834 4.3355 -3.3948 39 1 -2.9011 5.8324 -1.6792 40 1 -2.5457 7.0406 -2.9370 41 1 -4.6534 7.5858 -1.7509 42 1 -5.3191 5.9982 -2.2043 43 1 -4.4152 8.1710 -4.1483 44 1 -6.1037 7.7678 -3.7539 45 1 -5.3979 6.6743 -5.8640 46 1 -5.7536 5.4662 -4.6065 47 1 -2.9807 6.5085 -5.3390 48 1 -3.6460 4.9210 -5.7925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -89.024680 kcal Electronic energy + Delta-G solvation = -22489.690878 eV Core-core repulsion = 19349.422274 eV Total energy + Delta-G solvation = -3140.268604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.38658 -38.84241 -35.55544 -34.49592 -32.36854 -31.71475 -31.01336 -30.69749 -27.70769 -26.35401 -23.28791 -22.71026 -22.26985 -20.82438 -20.25609 -19.89103 -19.46278 -17.19262 -15.92115 -15.78214 -15.62081 -15.39697 -14.72112 -14.44099 -14.28030 -14.02595 -13.81398 -13.34070 -13.06248 -12.90159 -12.58948 -12.42612 -12.24470 -11.94744 -11.86104 -11.60770 -11.46245 -11.29094 -11.24886 -11.06386 -11.01639 -10.85900 -10.64892 -10.57379 -10.53461 -10.16637 -10.02160 -9.90525 -9.53349 -9.20369 -8.99013 -8.73440 -8.00070 -6.19936 -4.22025 3.24085 3.34859 3.36191 3.41771 4.03072 4.32826 4.47578 4.52350 4.57259 4.91315 4.97851 5.06113 5.13674 5.17927 5.25587 5.31795 5.34471 5.36466 5.44504 5.49224 5.61850 5.74809 5.77500 5.81838 5.82977 5.88950 5.94605 5.99085 6.00233 6.04605 6.07251 6.10836 6.17626 6.21971 6.28233 6.40589 6.49494 6.68291 6.72481 6.88191 6.98858 7.30854 7.35873 7.56068 8.19635 8.58998 8.78309 9.03761 9.41719 10.92240 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.002902 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.792421 B = 9646.875606 C = 9758.228583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.500 3.500 15 O -0.553 6.553 16 C -0.142 4.142 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.831 9.152 -12.770 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.432 6.432 16 C -0.183 4.183 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.105 4.105 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.200 9.073 -11.973 23.599 hybrid contribution 0.047 -0.556 0.369 0.669 sum -18.153 8.517 -11.604 23.168 Atomic orbital electron populations 1.21866 0.96956 0.98905 1.02278 1.22278 0.94352 1.00061 1.00985 1.19118 0.95490 0.88461 0.83152 0.93443 1.21075 0.88733 1.39632 1.07761 0.90259 1.24845 0.94868 0.95186 0.97702 1.69872 1.08689 1.44623 1.29857 0.86891 0.80970 0.79930 0.80863 1.20277 1.22211 1.18470 1.46205 1.15118 1.56087 1.17805 1.20548 0.82332 0.79029 0.89532 1.90650 1.51562 1.60079 1.40939 1.21697 0.98815 1.01087 0.96671 1.21351 0.94810 1.00500 0.97350 1.21668 0.95953 0.99838 0.97820 1.21155 0.96759 0.97568 0.94982 1.21653 0.96487 0.97949 0.99427 1.21544 0.97136 1.00257 0.96883 1.21539 1.00803 0.97974 0.95383 1.21523 0.97254 0.98346 0.98608 1.21581 0.96309 1.00190 0.97100 0.92884 0.95092 0.92933 0.92393 0.92890 0.92322 0.77310 0.89679 0.89526 0.91081 0.91484 0.92101 0.92040 0.91247 0.91298 0.92130 0.92221 0.92103 0.92159 0.92432 0.92355 0.92133 0.92097 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.76 1.83 -69.08 -0.13 5.63 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.51 9.31 -34.44 -0.32 -14.83 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 9 Si 0.88 21.99 24.41 -169.99 -4.15 17.84 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.07 16 13 N -0.70 -13.84 5.02 -54.93 -0.28 -14.11 16 14 C 0.50 9.12 6.40 -10.98 -0.07 9.05 16 15 O -0.55 -11.91 13.12 5.56 0.07 -11.84 16 16 C -0.14 -1.85 5.70 -27.89 -0.16 -2.00 16 17 C -0.10 -1.25 4.26 -26.74 -0.11 -1.36 16 18 C -0.12 -1.09 4.68 -26.73 -0.13 -1.22 16 19 C -0.09 -0.77 2.19 -90.62 -0.20 -0.97 16 20 C -0.12 -1.09 4.96 -26.73 -0.13 -1.22 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.88 5.92 -26.76 -0.16 -1.04 16 24 C -0.11 -0.90 5.20 -26.76 -0.14 -1.04 16 25 H 0.05 1.05 5.64 -51.93 -0.29 0.76 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -30.46 357.98 -8.99 -39.45 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -9.03 Total: 4.09 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.78 Total: -14.96 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.50 Total: -39.97 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.46 -8.99 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.575 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds