Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 H 1.08993 * 109.47053 * 304.90214 * 3 2 1 5 5 C 1.50704 * 109.46908 * 184.89817 * 3 2 1 6 6 H 1.08000 * 119.99858 * 245.45168 * 5 3 2 7 7 C 1.37880 * 119.99695 * 65.45909 * 5 3 2 8 8 N 1.31509 * 120.00011 * 9.46322 * 7 5 3 9 9 Si 1.86794 * 119.99629 * 189.46778 * 7 5 3 10 10 H 1.48497 * 109.47324 * 84.99389 * 9 7 5 11 11 H 1.48501 * 109.46870 * 204.98963 * 9 7 5 12 12 H 1.48501 * 109.47470 * 324.98821 * 9 7 5 13 13 N 1.46501 * 109.46677 * 64.90243 * 3 2 1 14 14 C 1.34775 * 120.00107 * 274.99586 * 13 3 2 15 15 O 1.21286 * 120.00094 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00342 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47255 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46960 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47299 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46944 * 64.99791 * 19 18 17 21 21 C 1.52993 * 109.47166 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47097 * 299.99753 * 21 20 19 23 23 C 1.53004 * 109.46911 * 60.00091 * 22 21 20 24 24 C 1.52998 * 109.47261 * 184.99812 * 19 18 17 25 25 H 1.08989 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46807 * 299.99823 * 1 2 3 27 27 H 1.09002 * 109.47106 * 59.99428 * 1 2 3 28 28 H 1.08998 * 109.46807 * 240.00177 * 2 1 3 29 29 H 1.09002 * 109.47106 * 120.00572 * 2 1 3 30 30 H 0.96998 * 119.99992 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00011 * 95.00453 * 13 3 2 32 32 H 1.09004 * 109.47127 * 59.99546 * 16 14 13 33 33 H 1.09000 * 109.47103 * 300.00513 * 16 14 13 34 34 H 1.08992 * 109.47139 * 59.99776 * 17 16 14 35 35 H 1.08999 * 109.46810 * 299.99738 * 17 16 14 36 36 H 1.09000 * 109.47719 * 59.99781 * 18 17 16 37 37 H 1.09001 * 109.47515 * 299.99835 * 18 17 16 38 38 H 1.09001 * 109.46887 * 305.00011 * 19 18 17 39 39 H 1.09003 * 109.47424 * 300.00361 * 20 19 18 40 40 H 1.09000 * 109.46920 * 59.99881 * 20 19 18 41 41 H 1.09000 * 109.47160 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47639 * 59.99904 * 21 20 19 43 43 H 1.09001 * 109.47293 * 300.00082 * 22 21 20 44 44 H 1.08998 * 109.47411 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47424 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47149 * 59.99903 * 23 22 21 47 47 H 1.09001 * 109.47333 * 299.99926 * 24 19 18 48 48 H 1.09000 * 109.47081 * 60.00165 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8428 5 6 3.5422 1.4441 -0.1213 6 1 4.1494 1.8089 0.6939 7 6 4.1413 0.9800 -1.2732 8 7 3.4097 0.7115 -2.3325 9 14 5.9919 0.7326 -1.3289 10 1 6.3289 -0.6069 -0.7836 11 1 6.4619 0.8273 -2.7344 12 1 6.6563 1.7807 -0.5132 13 7 1.6505 2.0981 1.2509 14 6 0.4331 2.6651 1.3637 15 8 -0.3402 2.6323 0.4299 16 6 0.0324 3.3400 2.6502 17 6 -1.3866 3.8957 2.5143 18 6 -1.7930 4.5814 3.8202 19 6 -3.2118 5.1377 3.6841 20 6 -4.1984 3.9812 3.5100 21 6 -5.6171 4.5374 3.3733 22 6 -5.9775 5.3303 4.6313 23 6 -4.9909 6.4867 4.8054 24 6 -3.5718 5.9302 4.9423 25 1 -0.3633 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8311 0.3846 -3.1428 31 1 2.2688 2.1242 1.9978 32 1 0.7236 4.1556 2.8632 33 1 0.0625 2.6164 3.4648 34 1 -2.0774 3.0799 2.3015 35 1 -1.4169 4.6193 1.6996 36 1 -1.1022 5.3974 4.0325 37 1 -1.7626 3.8583 4.6352 38 1 -3.2633 5.7931 2.8147 39 1 -3.9420 3.4166 2.6136 40 1 -4.1469 3.3258 4.3794 41 1 -6.3200 3.7136 3.2498 42 1 -5.6684 5.1927 2.5038 43 1 -5.9264 4.6750 5.5009 44 1 -6.9881 5.7269 4.5338 45 1 -5.2479 7.0519 5.7013 46 1 -5.0421 7.1419 3.9358 47 1 -3.5204 5.2747 5.8117 48 1 -2.8689 6.7540 5.0663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -98.466781 kcal Electronic energy + Delta-G solvation = -22406.165500 eV Core-core repulsion = 19265.487456 eV Total energy + Delta-G solvation = -3140.678044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24498 -38.71456 -35.29205 -34.37882 -32.31158 -31.40135 -30.92605 -30.49469 -27.31677 -26.12867 -23.33388 -22.85792 -22.18881 -20.65871 -20.02282 -19.81423 -19.22754 -16.99182 -15.70635 -15.67004 -15.43525 -15.18017 -14.56176 -14.40480 -14.20633 -14.02833 -13.72336 -13.10098 -12.97350 -12.68674 -12.51828 -12.35128 -12.02984 -11.68682 -11.47656 -11.37442 -11.29318 -11.22695 -11.19103 -10.99132 -10.96958 -10.75479 -10.55254 -10.49745 -10.32480 -10.20058 -10.09651 -9.96136 -9.66162 -9.07557 -8.82588 -8.45495 -7.76455 -6.12716 -4.17854 3.25757 3.32519 3.33794 3.53010 4.16173 4.39327 4.52688 4.58384 4.61054 4.96078 5.02668 5.12650 5.20105 5.23419 5.32424 5.35578 5.37948 5.44387 5.49607 5.54737 5.68987 5.80297 5.83131 5.86608 5.87776 5.96557 5.97978 6.05688 6.12423 6.16456 6.22680 6.33529 6.37037 6.41770 6.46600 6.57169 6.62944 7.01522 7.20072 7.36262 7.48689 7.65139 7.75200 7.88938 8.11338 8.75877 8.83424 9.23996 9.48746 10.95555 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.002784 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.196582 B =10056.114713 C =10477.813994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.551 6.551 16 C -0.143 4.143 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 7.969 14.922 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.430 6.430 16 C -0.183 4.183 17 C -0.140 4.140 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.950 7.867 14.023 21.287 hybrid contribution 1.416 -0.233 0.286 1.463 sum -12.534 7.634 14.310 20.497 Atomic orbital electron populations 1.21835 0.98048 0.98036 1.01542 1.21844 0.92972 0.99996 1.01030 1.18757 0.94209 0.88868 0.81607 0.92732 1.21197 0.90716 1.43869 1.01716 0.92168 1.24892 0.98413 0.95219 0.95014 1.69984 1.35722 1.43842 1.02146 0.86543 0.85106 0.78697 0.77240 1.20441 1.21188 1.19939 1.46503 1.14905 1.56207 1.18355 1.20472 0.82593 0.79275 0.89354 1.90657 1.51587 1.60038 1.40754 1.21709 0.98675 1.00947 0.97006 1.21345 0.94941 1.00647 0.97045 1.21668 0.95712 0.99880 0.97985 1.21160 0.94518 0.96809 0.98015 1.21649 0.94050 0.97564 1.02215 1.21544 0.96950 0.99495 0.97837 1.21538 0.98456 0.97367 0.98319 1.21543 0.95167 0.97620 1.01409 1.21598 0.96179 0.99385 0.98000 0.95899 0.93968 0.93013 0.90369 0.94820 0.92589 0.78129 0.89821 0.89930 0.91155 0.91432 0.92125 0.92166 0.91196 0.91266 0.92194 0.92240 0.92060 0.92199 0.92447 0.92389 0.92099 0.92140 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.12 -2.89 5.50 -26.73 -0.15 -3.04 16 3 C 0.27 6.77 2.11 -69.08 -0.15 6.62 16 4 H 0.05 1.62 7.52 -51.93 -0.39 1.23 16 5 C -0.54 -14.27 8.66 -34.44 -0.30 -14.57 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -25.14 12.16 55.43 0.67 -24.47 16 9 Si 0.90 20.72 29.55 -169.99 -5.02 15.70 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.71 5.02 -54.93 -0.28 -14.98 16 14 C 0.50 9.69 6.39 -10.99 -0.07 9.62 16 15 O -0.55 -12.74 13.12 5.55 0.07 -12.67 16 16 C -0.14 -1.98 5.70 -27.88 -0.16 -2.14 16 17 C -0.10 -1.33 4.26 -26.73 -0.11 -1.44 16 18 C -0.11 -1.16 4.68 -26.73 -0.13 -1.28 16 19 C -0.09 -0.82 2.19 -90.62 -0.20 -1.02 16 20 C -0.12 -1.13 4.96 -26.73 -0.13 -1.27 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.92 5.92 -26.71 -0.16 -1.08 16 24 C -0.11 -0.94 5.21 -26.71 -0.14 -1.08 16 25 H 0.02 0.45 8.14 -51.94 -0.42 0.02 16 26 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 27 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 28 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 6.93 8.53 -40.82 -0.35 6.58 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -29.61 366.11 -10.01 -39.62 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -9.20 Total: 5.24 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.78 Total: -13.96 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.40 Total: -39.45 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.61 -10.01 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.842 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds