Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 H 1.08996 * 109.47470 * 305.00563 * 3 2 1 5 5 C 1.50700 * 109.47170 * 185.00044 * 3 2 1 6 6 H 1.07995 * 120.00325 * 240.00374 * 5 3 2 7 7 C 1.37880 * 119.99718 * 60.00317 * 5 3 2 8 8 N 1.31515 * 119.99966 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99946 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46873 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47096 * 119.99916 * 9 7 5 12 12 H 1.48499 * 109.47068 * 240.00029 * 9 7 5 13 13 N 1.46506 * 109.47121 * 65.00380 * 3 2 1 14 14 C 1.34776 * 119.99739 * 275.00030 * 13 3 2 15 15 O 1.21279 * 120.00142 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99779 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47315 * 300.00341 * 16 14 13 18 18 C 1.53001 * 109.46986 * 59.99975 * 16 14 13 19 19 C 1.53002 * 109.47357 * 179.97438 * 16 14 13 20 20 C 1.52996 * 109.47201 * 175.00178 * 19 16 14 21 21 C 1.53002 * 109.46891 * 175.00241 * 20 19 16 22 22 C 1.52996 * 109.46891 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47328 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.47060 * 60.00126 * 23 22 21 25 25 C 1.52997 * 109.46975 * 294.99833 * 20 19 16 26 26 H 1.09000 * 109.47458 * 59.99483 * 1 2 3 27 27 H 1.08999 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47004 * 299.99877 * 1 2 3 29 29 H 1.09004 * 109.46739 * 240.00599 * 2 1 3 30 30 H 1.09000 * 109.47458 * 120.00517 * 2 1 3 31 31 H 0.97007 * 119.99838 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99624 * 94.99622 * 13 3 2 33 33 H 1.09000 * 109.47132 * 180.02562 * 18 16 14 34 34 H 1.09005 * 109.47303 * 299.99581 * 18 16 14 35 35 H 1.08995 * 109.47579 * 60.00048 * 18 16 14 36 36 H 1.08998 * 109.46646 * 54.99822 * 19 16 14 37 37 H 1.09001 * 109.46843 * 295.00108 * 19 16 14 38 38 H 1.09001 * 109.47372 * 55.00205 * 20 19 16 39 39 H 1.08992 * 109.47056 * 59.99654 * 21 20 19 40 40 H 1.09004 * 109.47006 * 299.99770 * 21 20 19 41 41 H 1.09004 * 109.47368 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47372 * 59.99964 * 22 21 20 43 43 H 1.09002 * 109.47398 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47194 * 300.00476 * 23 22 21 45 45 H 1.08998 * 109.47533 * 59.99948 * 24 23 22 46 46 H 1.08996 * 109.47853 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47375 * 300.00370 * 25 20 19 48 48 H 1.09000 * 109.47140 * 60.00388 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4060 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5987 1.5452 -0.1938 11 1 6.4960 -0.5190 -1.4629 12 1 6.3998 1.6158 -2.6093 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3393 2.6326 0.4343 16 6 0.0363 3.3375 2.6550 17 1 0.0674 2.6128 3.4686 18 6 1.0068 4.4819 2.9540 19 6 -1.3825 3.8945 2.5213 20 6 -1.8343 4.4674 3.8661 21 6 -3.2012 5.1350 3.7027 22 6 -3.6533 5.7073 5.0476 23 6 -3.7572 4.5772 6.0738 24 6 -2.3903 3.9095 6.2372 25 6 -1.9380 3.3377 4.8927 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8291 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9978 33 1 0.7186 4.9686 3.8858 34 1 2.0178 4.0855 3.0492 35 1 0.9758 5.2067 2.1405 36 1 -2.0597 3.0951 2.2209 37 1 -1.3939 4.6826 1.7684 38 1 -1.1085 5.2047 4.2093 39 1 -3.9269 4.3977 3.3595 40 1 -3.1273 5.9399 2.9713 41 1 -4.6269 6.1834 4.9311 42 1 -2.9276 6.4445 5.3912 43 1 -4.0797 4.9849 7.0319 44 1 -4.4829 3.8400 5.7302 45 1 -1.6646 4.6466 6.5808 46 1 -2.4643 3.1041 6.9679 47 1 -2.6638 2.6003 4.5495 48 1 -0.9642 2.8620 5.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183815021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -91.866208 kcal Electronic energy + Delta-G solvation = -23165.652255 eV Core-core repulsion = 20025.260433 eV Total energy + Delta-G solvation = -3140.391822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.62010 -38.48403 -35.29640 -34.35007 -32.35386 -31.23159 -30.85165 -30.12618 -26.93958 -26.18001 -23.84389 -22.87784 -22.55379 -20.98861 -19.86142 -19.46728 -18.99866 -17.07602 -15.87190 -15.41188 -15.23696 -15.04642 -14.51875 -14.28896 -14.15935 -13.96354 -13.50255 -13.14463 -12.92795 -12.65416 -12.34221 -12.25758 -11.95353 -11.84402 -11.64592 -11.40031 -11.24125 -11.22224 -11.14877 -10.95754 -10.86900 -10.80094 -10.66439 -10.35460 -10.27290 -10.16945 -10.04822 -9.91490 -9.59114 -9.00409 -8.77219 -8.46688 -7.73340 -6.10217 -4.19292 3.24196 3.32131 3.34674 3.53306 4.14982 4.39086 4.59578 4.60870 4.69503 5.00903 5.06025 5.20625 5.22554 5.27255 5.34867 5.36688 5.42451 5.47260 5.50947 5.55335 5.73679 5.82405 5.90025 5.92964 6.00090 6.02178 6.06343 6.09502 6.17990 6.23318 6.24416 6.35652 6.42209 6.49067 6.52057 6.59838 6.70218 7.07690 7.24083 7.41629 7.53950 7.65755 7.78402 7.94731 8.21989 8.75848 8.82714 9.24405 9.48924 10.95074 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.003432 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.159049 B = 8155.618829 C = 8460.502620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.710 5.710 14 C 0.503 3.497 15 O -0.551 6.551 16 C -0.115 4.115 17 H 0.089 0.911 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.386 0.614 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 7.739 15.551 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.288 3.712 15 O -0.430 6.430 16 C -0.136 4.136 17 H 0.107 0.893 18 C -0.200 4.200 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.491 7.603 14.668 19.571 hybrid contribution 1.355 -0.125 0.218 1.378 sum -9.136 7.478 14.886 18.999 Atomic orbital electron populations 1.21832 0.98384 0.97903 1.01243 1.21927 0.92594 0.99938 1.02148 1.18747 0.94065 0.89125 0.81282 0.93458 1.21287 0.90858 1.38746 1.06163 0.92128 1.24894 0.98527 0.94889 0.95440 1.69912 1.34962 1.37748 1.09366 0.86423 0.85019 0.77743 0.78087 1.19763 1.20904 1.20921 1.46495 1.14832 1.56072 1.18317 1.20389 0.82592 0.79052 0.89129 1.90649 1.51519 1.60095 1.40748 1.21379 0.96841 0.98347 0.97047 0.89268 1.21793 0.98635 0.97827 1.01738 1.21391 0.94529 1.00943 0.96112 1.21241 0.96802 0.97298 0.95311 1.21575 0.96907 0.99991 0.96736 1.21529 1.00860 0.97704 0.95534 1.21535 0.97502 0.97983 0.98687 1.21525 0.96880 0.99829 0.97430 1.21651 1.01457 0.97852 0.94537 0.93211 0.95985 0.94249 0.88395 0.95156 0.92678 0.78149 0.92015 0.92180 0.92261 0.91274 0.91476 0.91014 0.91993 0.92032 0.92375 0.92193 0.92499 0.92130 0.92181 0.92328 0.91991 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.71 -14.68 4.91 -54.93 -0.27 -14.95 16 14 C 0.50 9.84 5.72 -10.99 -0.06 9.77 16 15 O -0.55 -12.79 13.06 5.56 0.07 -12.71 16 16 C -0.11 -1.63 2.59 -91.77 -0.24 -1.86 16 17 H 0.09 1.14 6.35 -51.93 -0.33 0.81 16 18 C -0.14 -1.76 8.85 37.16 0.33 -1.43 16 19 C -0.09 -1.23 3.50 -26.73 -0.09 -1.32 16 20 C -0.09 -0.91 2.05 -90.62 -0.19 -1.10 16 21 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 24 C -0.12 -1.00 5.92 -26.76 -0.16 -1.16 16 25 C -0.12 -1.15 4.96 -26.76 -0.13 -1.28 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.39 7.03 7.96 -40.82 -0.32 6.70 16 33 H 0.06 0.62 6.46 -51.93 -0.34 0.29 16 34 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -29.24 359.00 -9.46 -38.70 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.90 Total: 6.15 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.38 Total: -14.02 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.36 Total: -39.19 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.24 -9.46 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183815021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.162 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds