Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 C 1.52998 * 109.47363 * 295.41825 * 3 2 1 5 5 C 1.52992 * 109.47462 * 175.41455 * 3 2 1 6 6 N 1.46504 * 109.46599 * 55.41118 * 3 2 1 7 7 C 1.46498 * 120.00385 * 238.68781 * 6 3 2 8 8 C 1.50696 * 109.47233 * 270.00563 * 7 6 3 9 9 H 1.07997 * 120.00420 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99774 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99720 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99958 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46807 * 89.99985 * 12 10 8 14 14 H 1.48492 * 109.47157 * 210.00198 * 12 10 8 15 15 H 1.48496 * 109.46991 * 330.00391 * 12 10 8 16 16 C 1.34779 * 119.99861 * 58.69662 * 6 3 2 17 17 O 1.21282 * 119.99889 * 5.33842 * 16 6 3 18 18 C 1.50692 * 120.00136 * 185.06540 * 16 6 3 19 19 C 1.52995 * 109.47402 * 175.59852 * 18 16 6 20 20 C 1.53007 * 109.47521 * 180.02562 * 19 18 16 21 21 C 1.53778 * 113.60823 * 274.13320 * 20 19 18 22 22 C 1.53954 * 87.01999 * 220.04753 * 21 20 19 23 23 C 1.53778 * 87.11139 * 25.36200 * 22 21 20 24 24 H 1.09004 * 109.47327 * 299.99401 * 1 2 3 25 25 H 1.09003 * 109.47597 * 60.00102 * 1 2 3 26 26 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47327 * 240.00599 * 2 1 3 28 28 H 1.08995 * 109.47751 * 120.00161 * 2 1 3 29 29 H 1.09000 * 109.47707 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46795 * 299.99626 * 4 3 2 31 31 H 1.09005 * 109.47387 * 59.99447 * 4 3 2 32 32 H 1.09007 * 109.47270 * 298.03588 * 5 3 2 33 33 H 1.09003 * 109.47489 * 58.03873 * 5 3 2 34 34 H 1.09002 * 109.47101 * 178.03702 * 5 3 2 35 35 H 1.09005 * 109.46480 * 30.00482 * 7 6 3 36 36 H 1.09000 * 109.47374 * 150.00256 * 7 6 3 37 37 H 0.97003 * 119.99436 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.47250 * 295.59619 * 18 16 6 39 39 H 1.08997 * 109.47554 * 55.59751 * 18 16 6 40 40 H 1.09003 * 109.47215 * 299.99881 * 19 18 16 41 41 H 1.08999 * 109.47299 * 59.99741 * 19 18 16 42 42 H 1.08994 * 112.84559 * 45.32777 * 20 19 18 43 43 H 1.09005 * 113.61967 * 334.56376 * 21 20 19 44 44 H 1.08998 * 113.61391 * 105.47091 * 21 20 19 45 45 H 1.09006 * 113.53494 * 270.81503 * 22 21 20 46 46 H 1.08998 * 113.67135 * 139.93671 * 22 21 20 47 47 H 1.08999 * 113.62225 * 220.09205 * 23 22 21 48 48 H 1.09004 * 113.68824 * 89.19664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6263 2.1298 -1.3028 5 6 3.5656 1.4441 0.1153 6 7 1.4635 2.1642 1.1371 7 6 0.6587 3.3670 0.9096 8 6 1.5539 4.5793 0.9176 9 1 2.6160 4.4653 1.0767 10 6 1.0170 5.8340 0.7217 11 7 -0.2765 5.9729 0.5285 12 14 2.1265 7.3368 0.7323 13 1 2.6135 7.6022 -0.6452 14 1 1.3630 8.5124 1.2225 15 1 3.2850 7.0905 1.6280 16 6 1.6736 1.7216 2.3927 17 8 2.4180 0.7844 2.5887 18 6 0.9884 2.3951 3.5536 19 6 1.3074 1.6371 4.8438 20 6 0.6112 2.3206 6.0224 21 6 1.4226 3.4765 6.6309 22 6 0.9588 2.9703 8.0089 23 6 0.7995 1.5853 7.3598 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.9892 3.1576 -1.3027 30 1 2.0552 1.5928 -2.1489 31 1 0.5394 2.1287 -1.3850 32 1 3.8591 0.9858 1.0598 33 1 3.9931 0.8774 -0.7119 34 1 3.9315 2.4702 0.0802 35 1 0.1577 3.2916 -0.0556 36 1 -0.0865 3.4605 1.6995 37 1 -0.6543 6.8557 0.3910 38 1 1.3431 3.4223 3.6387 39 1 -0.0891 2.3953 3.3893 40 1 0.9527 0.6099 4.7588 41 1 2.3849 1.6370 5.0082 42 1 -0.4257 2.5799 5.8089 43 1 2.4972 3.3869 6.4719 44 1 1.0367 4.4632 6.3747 45 1 0.0170 3.4086 8.3392 46 1 1.7352 3.0078 8.7729 47 1 -0.0887 1.0473 7.6911 48 1 1.7027 0.9764 7.3999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189941292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = -43.294705 kcal Electronic energy + Delta-G solvation = -23908.736615 eV Core-core repulsion = 20770.451011 eV Total energy + Delta-G solvation = -3138.285603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.74018 -38.64692 -36.30492 -33.74212 -32.25404 -31.61762 -29.89271 -27.67597 -26.22449 -25.99948 -25.37735 -23.14880 -22.51373 -21.92771 -19.74224 -19.24415 -17.43599 -16.60895 -15.88602 -15.57485 -15.28664 -14.83995 -14.49799 -14.30409 -14.13748 -13.53238 -13.19249 -12.77375 -12.53819 -12.41024 -12.29415 -12.16408 -11.86120 -11.84220 -11.56562 -11.37728 -11.15522 -11.11493 -10.97946 -10.97214 -10.68646 -10.56705 -10.47103 -10.37007 -10.25913 -10.16695 -9.99571 -9.91769 -9.81735 -9.58975 -8.66894 -8.46241 -7.54896 -6.15112 -4.21198 3.22918 3.30568 3.33780 3.56807 3.99239 4.35710 4.77185 4.81270 4.89975 5.01644 5.17354 5.28265 5.45407 5.53242 5.58422 5.64702 5.74285 5.81618 5.86446 5.90024 5.93284 5.98650 6.02470 6.09946 6.11459 6.15090 6.22341 6.25317 6.28974 6.34747 6.43608 6.51977 6.54352 6.54632 6.65582 6.70690 6.72260 6.78703 6.93932 6.98306 7.04652 7.30104 7.70356 7.82455 8.12462 8.50092 8.86283 9.18019 9.46390 10.91118 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.007020 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.675623 B = 3987.913067 C = 5846.049179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.159 4.159 6 N -0.586 5.586 7 C 0.232 3.768 8 C -0.529 4.529 9 H 0.059 0.941 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.518 3.482 17 O -0.575 6.575 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -7.287 5.593 9.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.095 3.905 4 C -0.207 4.207 5 C -0.217 4.217 6 N -0.316 5.316 7 C 0.112 3.888 8 C -0.568 4.568 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.307 3.693 17 O -0.457 6.457 18 C -0.173 4.173 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.181 4.181 23 C -0.175 4.175 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.721 -7.605 5.627 9.487 hybrid contribution 0.433 1.199 -0.167 1.286 sum 1.154 -6.406 5.459 8.495 Atomic orbital electron populations 1.21719 0.96133 1.00269 1.02080 1.21908 0.95985 0.96813 1.02323 1.20145 0.92857 0.90767 0.86740 1.22124 1.01762 1.02083 0.94754 1.22194 0.95204 1.01885 1.02422 1.48314 1.51120 1.27929 1.04267 1.19489 0.90608 0.80305 0.98348 1.21490 0.94592 0.91012 1.49719 0.92274 1.24914 0.94971 0.98866 0.94999 1.69922 1.10747 1.23738 1.48639 0.86594 0.80698 0.82381 0.78412 1.20606 1.21153 1.19837 1.20478 0.81401 0.83086 0.84337 1.90507 1.38971 1.30833 1.85356 1.21603 1.01365 1.01640 0.92720 1.21289 1.00527 0.98600 0.92279 1.22572 0.99857 0.96496 0.93890 1.23009 1.00300 0.98632 0.95612 1.22841 1.01135 0.97235 0.96925 1.22928 1.01659 0.96284 0.96604 0.92705 0.92832 0.93822 0.92361 0.90380 0.90277 0.93130 0.92014 0.90676 0.93382 0.92595 0.93992 0.94692 0.92661 0.88270 0.89872 0.91992 0.91567 0.89374 0.90155 0.91426 0.90543 0.91955 0.91974 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.45 37.15 0.35 -1.95 16 2 C -0.13 -2.21 4.67 -26.73 -0.12 -2.34 16 3 C 0.18 3.34 0.73 -131.82 -0.10 3.24 16 4 C -0.15 -2.68 6.96 37.16 0.26 -2.42 16 5 C -0.16 -2.91 8.45 37.15 0.31 -2.60 16 6 N -0.59 -11.99 1.50 -160.19 -0.24 -12.23 16 7 C 0.23 5.34 4.41 -5.20 -0.02 5.32 16 8 C -0.53 -13.42 8.66 -34.44 -0.30 -13.72 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 12 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.52 10.53 6.81 -10.99 -0.07 10.45 16 17 O -0.57 -12.35 12.25 5.56 0.07 -12.28 16 18 C -0.13 -2.41 4.24 -27.89 -0.12 -2.53 16 19 C -0.09 -1.39 4.34 -26.73 -0.12 -1.50 16 20 C -0.11 -1.46 3.64 -89.81 -0.33 -1.79 16 21 C -0.14 -1.78 7.65 -25.83 -0.20 -1.98 16 22 C -0.14 -1.59 8.09 -25.83 -0.21 -1.80 16 23 C -0.14 -1.58 7.65 -25.92 -0.20 -1.78 16 24 H 0.05 0.95 7.26 -51.93 -0.38 0.58 16 25 H 0.05 0.82 6.55 -51.93 -0.34 0.48 16 26 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.44 6.40 -51.93 -0.33 1.11 16 29 H 0.08 1.60 7.13 -51.93 -0.37 1.23 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.11 5.35 -51.93 -0.28 0.83 16 32 H 0.07 1.49 6.04 -51.93 -0.31 1.18 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 1.01 5.75 -51.93 -0.30 0.71 16 36 H 0.04 0.84 6.32 -51.93 -0.33 0.51 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 39 H 0.08 1.46 7.35 -51.93 -0.38 1.07 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -26.81 364.85 -8.79 -35.60 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.87 Total: 5.18 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.96 Total: -13.78 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.50 Total: -35.66 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.81 -8.79 -35.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189941292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.695 kcal (2) G-P(sol) polarization free energy of solvation -26.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds