Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47204 * 2 1 4 4 H 1.08997 * 109.47036 * 54.99255 * 3 2 1 5 5 C 1.50697 * 109.46925 * 174.99784 * 3 2 1 6 6 H 1.08002 * 119.99792 * 119.99978 * 5 3 2 7 7 C 1.37871 * 119.99882 * 299.99725 * 5 3 2 8 8 N 1.31516 * 119.99909 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00502 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47205 * 89.99980 * 9 7 5 11 11 H 1.48496 * 109.47603 * 210.00196 * 9 7 5 12 12 H 1.48503 * 109.46844 * 330.00472 * 9 7 5 13 13 N 1.46507 * 109.46705 * 294.99699 * 3 2 1 14 14 C 1.34775 * 119.99901 * 85.00027 * 13 3 2 15 15 O 1.21279 * 120.00300 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99773 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.46980 * 300.00161 * 16 14 13 18 18 C 1.52997 * 109.47084 * 60.00361 * 16 14 13 19 19 C 1.52997 * 109.47232 * 179.97438 * 18 16 14 20 20 C 1.52996 * 109.47131 * 300.00126 * 19 18 16 21 21 H 1.09001 * 109.46997 * 299.99574 * 20 19 18 22 22 C 1.52997 * 109.47131 * 180.02562 * 20 19 18 23 23 C 1.53006 * 109.47127 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47232 * 59.99874 * 22 20 19 25 25 C 1.52997 * 109.47165 * 59.99833 * 20 19 18 26 26 C 1.52996 * 109.46946 * 180.02562 * 16 14 13 27 27 H 1.09003 * 109.47291 * 300.00539 * 1 2 3 28 28 H 1.09000 * 109.46953 * 60.00513 * 1 2 3 29 29 H 1.08995 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46875 * 239.99604 * 2 1 3 31 31 H 1.09005 * 109.46681 * 119.99889 * 2 1 3 32 32 H 0.96995 * 120.00197 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99933 * 265.00277 * 13 3 2 34 34 H 1.09002 * 109.47045 * 299.99967 * 18 16 14 35 35 H 1.08998 * 109.47624 * 59.99590 * 18 16 14 36 36 H 1.09000 * 109.47611 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.46832 * 59.99801 * 19 18 16 38 38 H 1.09001 * 109.47289 * 299.99950 * 22 20 19 39 39 H 1.09001 * 109.47002 * 299.99574 * 23 22 20 40 40 H 1.08993 * 109.46955 * 60.00011 * 23 22 20 41 41 H 1.09000 * 109.47050 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.47375 * 60.00133 * 24 22 20 43 43 H 1.09000 * 109.47140 * 180.02562 * 24 22 20 44 44 H 1.09001 * 109.47230 * 299.99295 * 24 22 20 45 45 H 1.08998 * 109.47624 * 60.00423 * 25 20 19 46 46 H 1.09002 * 109.47045 * 180.02562 * 25 20 19 47 47 H 1.09004 * 109.47108 * 60.00127 * 26 16 14 48 48 H 1.09001 * 109.47367 * 300.00429 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8803 1.3364 9 14 3.0963 0.1102 2.5708 10 1 2.8743 -1.3259 2.2648 11 1 3.7940 0.2362 3.8756 12 1 1.7880 0.8096 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6327 -0.4343 16 6 0.0368 3.3384 -2.6547 17 1 0.7283 4.1539 -2.8669 18 6 0.0808 2.3220 -3.7974 19 6 -0.3243 3.0063 -5.1045 20 6 -1.7434 3.5621 -4.9707 21 1 -2.4346 2.7464 -4.7583 22 6 -2.1488 4.2457 -6.2780 23 6 -3.5682 4.8010 -6.1444 24 6 -2.1049 3.2288 -7.4203 25 6 -1.7874 4.5785 -3.8280 26 6 -1.3820 3.8952 -2.5211 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 5.8769 0.4819 2.1130 33 1 2.2720 2.1230 -1.9979 34 1 1.0918 1.9257 -3.8925 35 1 -0.6106 1.5065 -3.5852 36 1 -0.2925 2.2823 -5.9187 37 1 0.3668 3.8219 -5.3169 38 1 -1.4577 5.0614 -6.4910 39 1 -4.2590 3.9851 -5.9318 40 1 -3.5999 5.5254 -5.3306 41 1 -3.8568 5.2885 -7.0757 42 1 -2.7960 2.4132 -7.2074 43 1 -2.3932 3.7160 -8.3518 44 1 -1.0938 2.8329 -7.5157 45 1 -1.0964 5.3942 -4.0404 46 1 -2.7986 4.9741 -3.7324 47 1 -1.4129 4.6194 -1.7070 48 1 -2.0737 3.0800 -2.3085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248394355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -81.572796 kcal Electronic energy + Delta-G solvation = -23393.235111 eV Core-core repulsion = 20253.289645 eV Total energy + Delta-G solvation = -3139.945466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99848 -38.42484 -35.51087 -34.70511 -32.37864 -31.58224 -30.83972 -29.61618 -27.45237 -27.27421 -23.97137 -22.65070 -22.31078 -21.11328 -19.98710 -19.80459 -19.31659 -17.30782 -16.12420 -15.76275 -15.42138 -14.91634 -14.49459 -14.23207 -14.22342 -13.78027 -13.58472 -13.32269 -13.20396 -12.91920 -12.45900 -12.41087 -12.30151 -11.93752 -11.85430 -11.73175 -11.56929 -11.30168 -11.25851 -11.09314 -11.01947 -10.85438 -10.76412 -10.60155 -10.44226 -10.20641 -9.90957 -9.87696 -9.51543 -9.19654 -8.90231 -8.73187 -7.99409 -6.19747 -4.21819 3.24145 3.33898 3.36293 3.41894 4.03176 4.32976 4.50846 4.55594 4.67628 4.85288 4.99504 5.12955 5.14170 5.26206 5.30676 5.41105 5.41967 5.49216 5.52741 5.53843 5.58077 5.66114 5.72218 5.81641 5.89537 5.91447 5.98359 5.99471 6.04910 6.11116 6.12617 6.16931 6.21630 6.26224 6.30907 6.41147 6.51731 6.68694 6.72771 6.88544 6.99330 7.31130 7.36209 7.56381 8.19969 8.59385 8.78524 9.04034 9.41950 10.92437 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.003695 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.873616 B = 7575.078879 C = 7775.703211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.701 5.701 14 C 0.505 3.495 15 O -0.552 6.552 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.083 4.083 21 H 0.069 0.931 22 C -0.092 4.092 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.115 4.115 26 C -0.096 4.096 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.393 0.607 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.356 5.237 -15.606 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.291 3.709 15 O -0.431 6.431 16 C -0.129 4.129 17 H 0.109 0.891 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.102 4.102 21 H 0.088 0.912 22 C -0.111 4.111 23 C -0.207 4.207 24 C -0.207 4.207 25 C -0.152 4.152 26 C -0.134 4.134 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.726 5.155 -14.803 21.507 hybrid contribution 0.038 -0.543 0.429 0.693 sum -14.688 4.612 -14.375 21.063 Atomic orbital electron populations 1.21871 0.96978 0.98892 1.02294 1.22274 0.94329 1.00046 1.00965 1.19118 0.95480 0.88463 0.83131 0.93462 1.21071 0.88734 1.39622 1.07757 0.90270 1.24838 0.94858 0.95184 0.97684 1.69870 1.08694 1.44622 1.29851 0.86897 0.80975 0.79934 0.80879 1.20274 1.22217 1.18479 1.46184 1.15037 1.55985 1.17713 1.20474 0.82318 0.78967 0.89162 1.90646 1.51624 1.60018 1.40842 1.21349 0.99024 0.98853 0.93649 0.89148 1.21513 1.02138 0.97563 0.93548 1.21636 0.96232 1.00097 0.97079 1.21235 0.96984 0.97926 0.94036 0.91224 1.21146 0.97079 0.97939 0.94903 1.21901 0.96410 1.00947 1.01423 1.21904 1.01974 0.99072 0.97746 1.21663 1.01322 0.97889 0.94364 1.21289 0.94752 1.00507 0.96866 0.92954 0.92839 0.95114 0.92395 0.92912 0.92328 0.77343 0.91290 0.91595 0.91577 0.91863 0.91350 0.92808 0.92325 0.93108 0.92812 0.93102 0.92296 0.92104 0.91700 0.91414 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.76 1.83 -69.08 -0.13 5.63 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.53 -14.49 9.31 -34.44 -0.32 -14.81 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.88 21.98 24.41 -169.99 -4.15 17.83 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.70 -13.80 4.91 -54.93 -0.27 -14.07 16 14 C 0.51 9.30 5.72 -10.98 -0.06 9.24 16 15 O -0.55 -12.00 13.12 5.56 0.07 -11.93 16 16 C -0.11 -1.45 2.53 -91.77 -0.23 -1.68 16 17 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 18 C -0.11 -1.27 5.10 -26.73 -0.14 -1.40 16 19 C -0.11 -1.06 4.85 -26.73 -0.13 -1.19 16 20 C -0.08 -0.75 1.77 -90.62 -0.16 -0.91 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.09 -0.72 2.51 -90.62 -0.23 -0.95 16 23 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 24 C -0.15 -1.09 8.84 37.16 0.33 -0.77 16 25 C -0.11 -1.13 4.85 -26.76 -0.13 -1.26 16 26 C -0.10 -1.22 4.49 -26.76 -0.12 -1.34 16 27 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 28 H 0.05 1.06 5.65 -51.93 -0.29 0.77 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.39 6.91 7.96 -40.82 -0.32 6.58 16 34 H 0.07 0.79 7.56 -51.93 -0.39 0.39 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 47 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 48 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -30.26 351.37 -7.97 -38.23 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.78 Total: 4.40 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.91 Total: -13.93 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.50 Total: -39.90 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.26 -7.97 -38.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248394355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.344 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds