Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46862 * 2 1 4 4 H 1.08996 * 109.47229 * 282.82118 * 3 2 1 5 5 C 1.53009 * 109.46991 * 162.82589 * 3 2 1 6 6 C 1.53008 * 109.46773 * 64.99954 * 5 3 2 7 7 C 1.53002 * 109.46957 * 65.00271 * 6 5 3 8 8 C 1.53003 * 109.46742 * 184.99937 * 6 5 3 9 9 C 1.50699 * 109.47151 * 42.82957 * 3 2 1 10 10 O 1.21289 * 120.00101 * 28.89345 * 9 3 2 11 11 N 1.34780 * 119.99789 * 208.89564 * 9 3 2 12 12 C 1.37099 * 120.00061 * 186.19022 * 11 9 3 13 13 H 1.08006 * 119.99829 * 36.49327 * 12 11 9 14 14 C 1.38949 * 120.00013 * 216.50039 * 12 11 9 15 15 N 1.31410 * 119.99996 * 303.18943 * 14 12 11 16 16 Si 1.86797 * 119.99991 * 123.18873 * 14 12 11 17 17 H 1.48495 * 109.47132 * 89.99856 * 16 14 12 18 18 H 1.48502 * 109.46969 * 209.99730 * 16 14 12 19 19 H 1.48499 * 109.47234 * 329.99727 * 16 14 12 20 20 C 1.46500 * 120.00046 * 6.18672 * 11 9 3 21 21 C 1.54968 * 110.92205 * 114.51586 * 20 11 9 22 22 C 1.54263 * 104.16125 * 156.29413 * 21 20 11 23 23 C 1.53872 * 106.64017 * 336.45003 * 22 21 20 24 24 C 1.54263 * 106.60144 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47006 * 301.70197 * 1 2 3 26 26 H 1.08999 * 109.47645 * 61.70555 * 1 2 3 27 27 H 1.08999 * 109.47102 * 181.70717 * 1 2 3 28 28 H 1.08998 * 109.46974 * 240.00507 * 2 1 3 29 29 H 1.08999 * 109.47060 * 120.00012 * 2 1 3 30 30 H 1.08995 * 109.46994 * 184.99670 * 5 3 2 31 31 H 1.08995 * 109.46934 * 305.00191 * 5 3 2 32 32 H 1.08994 * 109.47032 * 305.00300 * 6 5 3 33 33 H 1.08994 * 109.47299 * 59.99597 * 7 6 5 34 34 H 1.08998 * 109.46704 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46843 * 299.99856 * 7 6 5 36 36 H 1.08998 * 109.46760 * 59.99915 * 8 6 5 37 37 H 1.08993 * 109.46937 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47167 * 300.00191 * 8 6 5 39 39 H 0.96997 * 120.00218 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.67371 * 351.21780 * 20 11 9 41 41 H 1.09005 * 110.47134 * 37.64634 * 21 20 11 42 42 H 1.08998 * 110.53440 * 274.98109 * 21 20 11 43 43 H 1.08994 * 110.03745 * 217.13669 * 22 21 20 44 44 H 1.09000 * 110.02691 * 95.75722 * 22 21 20 45 45 H 1.08998 * 110.03352 * 119.25496 * 23 22 21 46 46 H 1.09000 * 110.03233 * 240.64039 * 23 22 21 47 47 H 1.08991 * 110.49107 * 142.28820 * 24 23 22 48 48 H 1.09001 * 110.48546 * 264.80111 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.9460 1.8611 -1.0020 5 6 3.5094 1.4640 0.4260 6 6 4.3546 0.7358 -0.6212 7 6 4.3048 1.5062 -1.9422 8 6 5.8030 0.6482 -0.1362 9 6 1.2249 2.2634 0.9659 10 8 0.7213 1.7363 1.9352 11 7 1.0557 3.5834 0.7526 12 6 0.4236 4.3544 1.6937 13 1 0.5726 4.1541 2.7445 14 6 -0.4087 5.3934 1.2956 15 7 0.0555 6.3465 0.5192 16 14 -2.1876 5.4352 1.8641 17 1 -2.2807 6.1820 3.1442 18 1 -3.0201 6.1097 0.8359 19 1 -2.6761 4.0472 2.0641 20 6 1.5471 4.1944 -0.4849 21 6 0.3716 4.7177 -1.3485 22 6 1.0084 5.8127 -2.2290 23 6 2.2651 6.2996 -1.4866 24 6 2.3487 5.4841 -0.1798 25 1 -0.3633 0.5401 0.8744 26 1 -0.3634 0.4871 -0.9048 27 1 -0.3633 -1.0272 0.0306 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8477 2.4966 0.5119 31 1 3.6157 0.9654 1.3893 32 1 3.9602 -0.2691 -0.7715 33 1 4.6990 2.5111 -1.7919 34 1 4.9065 0.9872 -2.6883 35 1 3.2728 1.5687 -2.2876 36 1 5.8384 0.0994 0.8049 37 1 6.4052 0.1299 -0.8824 38 1 6.1973 1.6531 0.0141 39 1 -0.5254 7.0720 0.2416 40 1 2.1545 3.4864 -1.0488 41 1 -0.4072 5.1426 -0.7151 42 1 -0.0335 3.9176 -1.9681 43 1 0.3096 6.6386 -2.3616 44 1 1.2846 5.3984 -3.1986 45 1 3.1513 6.1208 -2.0955 46 1 2.1766 7.3620 -1.2595 47 1 3.3856 5.2426 0.0536 48 1 1.8917 6.0340 0.6429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308090210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -26.889611 kcal Electronic energy + Delta-G solvation = -24893.940142 eV Core-core repulsion = 21756.365917 eV Total energy + Delta-G solvation = -3137.574225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.45351 -37.42065 -36.16414 -33.60584 -32.78273 -32.14732 -28.89400 -27.58926 -27.04602 -26.68500 -25.23607 -23.47709 -21.86059 -19.95914 -19.64499 -19.26481 -18.14610 -16.68640 -16.43241 -15.07448 -14.75267 -14.47063 -14.44768 -14.12334 -13.76915 -13.48041 -13.14097 -12.88091 -12.73708 -12.64743 -12.40339 -12.06433 -11.87029 -11.55333 -11.34841 -11.31364 -10.99889 -10.92542 -10.80658 -10.57393 -10.48067 -10.34044 -10.28723 -10.14447 -10.11590 -10.03102 -10.00312 -9.92019 -9.71566 -9.20926 -8.11697 -7.81452 -7.37215 -6.66224 -3.68576 3.14228 3.34057 3.47869 3.94902 4.15153 4.65627 4.87470 5.07004 5.13166 5.19186 5.45421 5.55155 5.67217 5.69574 5.74314 5.76878 5.79990 5.89858 5.92371 5.97569 6.05836 6.12819 6.17531 6.19719 6.28577 6.33770 6.39892 6.45725 6.50205 6.52636 6.56846 6.58883 6.66110 6.66438 6.72971 6.84932 6.90331 6.94714 7.03018 7.17297 7.27377 7.37966 7.60619 8.07590 8.36604 8.64318 9.25284 9.49204 10.14537 10.25772 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.007475 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.409941 B = 3745.126999 C = 4703.383470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.107 4.107 4 H 0.081 0.919 5 C -0.099 4.099 6 C -0.096 4.096 7 C -0.149 4.149 8 C -0.146 4.146 9 C 0.462 3.538 10 O -0.579 6.579 11 N -0.436 5.436 12 C -0.367 4.367 13 H 0.096 0.904 14 C 0.093 3.907 15 N -0.766 5.766 16 Si 0.837 3.163 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.132 3.868 21 C -0.146 4.146 22 C -0.100 4.100 23 C -0.099 4.099 24 C -0.121 4.121 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.270 0.730 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.024 0.976 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.052 0.948 47 H 0.021 0.979 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 -4.045 -6.981 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.132 4.132 3 C -0.128 4.128 4 H 0.099 0.901 5 C -0.137 4.137 6 C -0.115 4.115 7 C -0.206 4.206 8 C -0.203 4.203 9 C 0.251 3.749 10 O -0.464 6.464 11 N -0.154 5.154 12 C -0.490 4.490 13 H 0.113 0.887 14 C -0.118 4.118 15 N -0.398 5.398 16 Si 0.660 3.340 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.191 1.191 20 C 0.028 3.972 21 C -0.184 4.184 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.159 4.159 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.547 -4.064 -6.614 10.155 hybrid contribution -0.882 0.231 -0.111 0.918 sum 5.665 -3.833 -6.725 9.592 Atomic orbital electron populations 1.22114 0.95848 1.00834 1.03814 1.21259 0.96434 0.94853 1.00646 1.21408 0.95150 0.96425 0.99865 0.90068 1.21563 0.93015 1.00851 0.98319 1.21146 0.95273 0.99698 0.95363 1.21899 1.01801 1.00269 0.96647 1.21829 0.96141 1.01637 1.00686 1.19916 0.84901 0.82071 0.88012 1.90436 1.52689 1.70610 1.32649 1.43643 1.50103 1.05167 1.16457 1.18713 1.25567 1.15221 0.89523 0.88676 1.25193 0.98756 0.94052 0.93781 1.70709 1.33954 1.04726 1.30381 0.87437 0.88033 0.79432 0.79125 1.20303 1.20935 1.19060 1.22056 0.94376 0.94063 0.86676 1.23444 1.01195 0.96104 0.97702 1.21795 0.97259 0.98230 0.96580 1.21784 0.95538 0.99742 0.96695 1.22944 0.96152 0.96297 1.00458 0.88817 0.94045 0.94175 0.92942 0.92037 0.91761 0.91745 0.91149 0.92592 0.93249 0.92386 0.92869 0.93134 0.92770 0.91815 0.92101 0.86622 0.95727 0.93215 0.94565 0.94832 0.92875 0.96031 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.36 37.16 0.35 -2.76 16 2 C -0.09 -1.60 4.72 -26.73 -0.13 -1.72 16 3 C -0.11 -1.97 1.58 -91.77 -0.15 -2.11 16 4 H 0.08 1.45 4.19 -51.93 -0.22 1.23 16 5 C -0.10 -1.62 4.10 -26.72 -0.11 -1.73 16 6 C -0.10 -1.25 2.80 -90.61 -0.25 -1.50 16 7 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 8 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 9 C 0.46 10.90 5.78 -10.98 -0.06 10.83 16 10 O -0.58 -15.59 14.06 5.55 0.08 -15.51 16 11 N -0.44 -10.56 2.69 -105.58 -0.28 -10.84 16 12 C -0.37 -9.71 7.85 -14.93 -0.12 -9.83 16 13 H 0.10 2.74 7.95 -52.48 -0.42 2.33 16 14 C 0.09 2.29 3.52 -17.47 -0.06 2.23 16 15 N -0.77 -17.61 6.37 55.50 0.35 -17.25 16 16 Si 0.84 19.35 29.68 -169.99 -5.05 14.30 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.13 2.81 3.05 -65.90 -0.20 2.61 16 21 C -0.15 -3.07 5.75 -25.03 -0.14 -3.21 16 22 C -0.10 -1.83 6.41 -25.62 -0.16 -1.99 16 23 C -0.10 -1.80 6.45 -25.62 -0.17 -1.97 16 24 C -0.12 -2.51 5.64 -25.07 -0.14 -2.65 16 25 H 0.09 2.09 5.24 -51.93 -0.27 1.82 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 29 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 32 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.75 6.46 -51.93 -0.34 0.42 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.27 5.89 8.31 -40.82 -0.34 5.55 16 40 H 0.06 1.20 5.44 -51.93 -0.28 0.92 16 41 H 0.12 2.70 3.83 -53.25 -0.20 2.50 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.14 3.28 4.66 -51.93 -0.24 3.04 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -26.58 349.47 -8.89 -35.47 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.59 Total: 5.21 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.67 Total: -16.64 kcal Atomic # 7 Polarization: -28.17 SS G_CDS: 0.07 Total: -28.10 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.05 Total: 14.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.58 -8.89 -35.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308090210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.582 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds