Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 H 1.09001 * 109.47140 * 179.48611 * 3 2 1 5 5 C 1.52999 * 109.47071 * 299.47880 * 3 2 1 6 6 C 1.53002 * 109.47615 * 295.03899 * 5 3 2 7 7 C 1.53004 * 109.47411 * 175.00581 * 6 5 3 8 8 C 1.53002 * 109.46944 * 295.01017 * 6 5 3 9 9 C 1.50693 * 109.47169 * 59.48303 * 3 2 1 10 10 O 1.21300 * 119.99614 * 249.32043 * 9 3 2 11 11 N 1.34769 * 120.00146 * 69.32316 * 9 3 2 12 12 C 1.37104 * 119.99882 * 175.03458 * 11 9 3 13 13 H 1.07997 * 120.00102 * 139.28953 * 12 11 9 14 14 C 1.38952 * 119.99968 * 319.28227 * 12 11 9 15 15 N 1.31409 * 119.99517 * 159.93532 * 14 12 11 16 16 Si 1.86795 * 119.99913 * 339.93807 * 14 12 11 17 17 H 1.48503 * 109.47301 * 95.17819 * 16 14 12 18 18 H 1.48502 * 109.46750 * 215.17104 * 16 14 12 19 19 H 1.48489 * 109.47300 * 335.17273 * 16 14 12 20 20 C 1.46493 * 120.00183 * 355.03386 * 11 9 3 21 21 C 1.54269 * 110.03382 * 238.86638 * 20 11 9 22 22 C 1.54968 * 104.16194 * 217.13609 * 21 20 11 23 23 C 1.54891 * 102.77691 * 37.88442 * 22 21 20 24 24 C 1.53875 * 110.03794 * 121.64889 * 20 11 9 25 25 H 1.08997 * 109.46837 * 306.72053 * 1 2 3 26 26 H 1.09002 * 109.46901 * 66.72060 * 1 2 3 27 27 H 1.08997 * 109.46909 * 186.72232 * 1 2 3 28 28 H 1.09004 * 109.46954 * 240.00069 * 2 1 3 29 29 H 1.09001 * 109.47329 * 120.00174 * 2 1 3 30 30 H 1.09000 * 109.46760 * 55.03948 * 5 3 2 31 31 H 1.09001 * 109.47260 * 175.03258 * 5 3 2 32 32 H 1.09003 * 109.47046 * 55.00401 * 6 5 3 33 33 H 1.08999 * 109.46874 * 60.00310 * 7 6 5 34 34 H 1.09001 * 109.46915 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46840 * 299.99851 * 7 6 5 36 36 H 1.09007 * 109.46797 * 306.38570 * 8 6 5 37 37 H 1.08995 * 109.47533 * 66.38845 * 8 6 5 38 38 H 1.09002 * 109.47005 * 186.39020 * 8 6 5 39 39 H 0.97005 * 119.99642 * 180.02562 * 15 14 12 40 40 H 1.09003 * 110.01889 * 0.25464 * 20 11 9 41 41 H 1.09003 * 110.48713 * 335.77835 * 21 20 11 42 42 H 1.08996 * 110.49119 * 98.42551 * 21 20 11 43 43 H 1.09005 * 110.71571 * 279.57380 * 22 21 20 44 44 H 1.08991 * 110.92287 * 156.29523 * 22 21 20 45 45 H 1.08995 * 110.48703 * 203.40834 * 23 22 21 46 46 H 1.08999 * 110.59483 * 80.81905 * 23 22 21 47 47 H 1.09005 * 110.03376 * 238.57499 * 24 20 11 48 48 H 1.09001 * 110.02908 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0092 5 6 1.5407 2.1599 -1.2557 6 6 2.1607 1.5106 -2.4947 7 6 1.5671 2.1451 -3.7541 8 6 3.6753 1.7268 -2.4800 9 6 1.5273 2.1566 1.2239 10 8 0.6984 3.0350 1.1109 11 7 1.9896 1.8193 2.4441 12 6 1.6007 2.5355 3.5466 13 1 1.3695 2.0238 4.4691 14 6 1.5042 3.9200 3.4771 15 7 0.7783 4.5729 4.3567 16 14 2.4061 4.8528 2.1334 17 1 1.4861 5.0896 0.9920 18 1 2.8784 6.1557 2.6669 19 1 3.5708 4.0549 1.6731 20 6 2.9076 0.6873 2.5924 21 6 2.2986 -0.3662 3.5406 22 6 3.5121 -0.9016 4.3420 23 6 4.3666 0.3716 4.5611 24 6 4.2221 1.1560 3.2407 25 1 -0.3633 0.6144 0.8237 26 1 -0.3633 0.4062 -0.9440 27 1 -0.3633 -1.0206 0.1203 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.4548 2.0834 -1.3103 31 1 1.8292 3.2102 -1.2131 32 1 1.9462 0.4419 -2.4906 33 1 1.7816 3.2137 -3.7582 34 1 2.0091 1.6827 -4.6367 35 1 0.4881 1.9909 -3.7646 36 1 3.8894 2.7899 -2.3697 37 1 4.1123 1.1796 -1.6448 38 1 4.1030 1.3652 -3.4151 39 1 0.7106 5.5393 4.3080 40 1 3.1098 0.2409 1.6188 41 1 1.5738 0.0967 4.2102 42 1 1.8331 -1.1696 2.9697 43 1 4.0627 -1.6409 3.7601 44 1 3.1938 -1.3221 5.2958 45 1 5.4093 0.1060 4.7349 46 1 3.9782 0.9550 5.3959 47 1 5.0624 0.9364 2.5819 48 1 4.1771 2.2258 3.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308090211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -53.278997 kcal Electronic energy + Delta-G solvation = -24808.634002 eV Core-core repulsion = 21669.915447 eV Total energy + Delta-G solvation = -3138.718555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83933 -37.51572 -36.39494 -33.50178 -33.46496 -31.64290 -28.59459 -28.12815 -27.15399 -27.05444 -25.55508 -23.73994 -21.88348 -20.30379 -20.07452 -19.22384 -18.53385 -16.72250 -15.94889 -15.65377 -15.33196 -14.72914 -14.56924 -14.03890 -13.84188 -13.59050 -13.40733 -13.06204 -12.75110 -12.66691 -12.24291 -12.17637 -11.95187 -11.92214 -11.64410 -11.47098 -11.22205 -10.97401 -10.92586 -10.77869 -10.68091 -10.56762 -10.54551 -10.37092 -10.17998 -10.10460 -10.03039 -9.87211 -9.79269 -9.74291 -8.49824 -8.26959 -7.46733 -6.13034 -3.83551 3.36311 3.48272 3.67401 3.92992 4.47310 4.60337 4.98803 5.02280 5.07480 5.12737 5.14023 5.27846 5.37366 5.39869 5.48593 5.52171 5.68420 5.72945 5.75845 5.84605 5.89506 5.89833 5.97666 6.01108 6.07248 6.09044 6.11508 6.14867 6.16610 6.24455 6.28183 6.32158 6.34460 6.36456 6.40274 6.49767 6.55137 6.67376 6.69060 6.78673 6.84311 6.91918 6.99915 7.93811 8.09507 8.90246 9.06221 9.53883 9.96550 10.93552 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.008247 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.314023 B = 3394.538486 C = 4338.651711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.108 4.108 4 H 0.079 0.921 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.145 4.145 8 C -0.149 4.149 9 C 0.457 3.543 10 O -0.546 6.546 11 N -0.458 5.458 12 C -0.337 4.337 13 H 0.093 0.907 14 C 0.092 3.908 15 N -0.868 5.868 16 Si 0.899 3.101 17 H -0.256 1.256 18 H -0.310 1.310 19 H -0.279 1.279 20 C 0.121 3.879 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.270 0.730 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -10.659 -9.341 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.130 4.130 4 H 0.097 0.903 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.202 4.202 8 C -0.206 4.206 9 C 0.246 3.754 10 O -0.429 6.429 11 N -0.180 5.180 12 C -0.462 4.462 13 H 0.111 0.889 14 C -0.116 4.116 15 N -0.504 5.504 16 Si 0.730 3.270 17 H -0.181 1.181 18 H -0.239 1.239 19 H -0.205 1.205 20 C 0.016 3.984 21 C -0.169 4.169 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.989 -10.043 -9.304 14.943 hybrid contribution 0.577 0.581 -0.503 0.961 sum 6.566 -9.462 -9.807 15.126 Atomic orbital electron populations 1.21804 0.95473 1.00962 1.02693 1.21719 0.96945 0.95007 1.01964 1.21352 1.00620 0.96031 0.94959 0.90290 1.21459 1.01135 0.99168 0.91464 1.21204 0.95261 1.00274 0.95049 1.21819 1.00650 1.00827 0.96939 1.21898 0.95773 1.01829 1.01104 1.20209 0.84083 0.86355 0.84723 1.90534 1.33919 1.33025 1.85392 1.43778 1.39779 1.28211 1.06220 1.18637 1.47279 0.88759 0.91561 0.88920 1.25209 0.93865 0.96767 0.95724 1.69760 1.34794 1.08764 1.37079 0.86575 0.79252 0.77742 0.83481 1.18145 1.23902 1.20468 1.21974 0.89765 0.88423 0.98202 1.22710 0.98063 0.97352 0.98753 1.22440 0.96803 0.97147 0.99524 1.22256 0.98526 0.96196 0.98484 1.22448 0.96241 1.02245 0.96080 0.91519 0.92788 0.93462 0.91867 0.90969 0.90858 0.91967 0.91037 0.92842 0.93154 0.92771 0.92814 0.92551 0.93165 0.92056 0.90145 0.89762 0.92545 0.92312 0.92148 0.92779 0.91242 0.93003 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.25 37.16 0.34 -2.04 16 2 C -0.12 -1.77 5.05 -26.73 -0.13 -1.90 16 3 C -0.11 -1.92 1.52 -91.78 -0.14 -2.06 16 4 H 0.08 1.34 5.87 -51.93 -0.30 1.04 16 5 C -0.09 -1.60 3.24 -26.73 -0.09 -1.68 16 6 C -0.10 -1.28 2.78 -90.62 -0.25 -1.54 16 7 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 8 C -0.15 -1.80 8.79 37.16 0.33 -1.48 16 9 C 0.46 10.66 3.60 -10.99 -0.04 10.62 16 10 O -0.55 -15.08 11.78 5.54 0.07 -15.02 16 11 N -0.46 -10.69 2.14 -106.55 -0.23 -10.92 16 12 C -0.34 -9.26 8.17 -14.93 -0.12 -9.38 16 13 H 0.09 2.68 6.85 -52.49 -0.36 2.32 16 14 C 0.09 2.72 4.83 -17.47 -0.08 2.64 16 15 N -0.87 -26.72 13.96 55.50 0.77 -25.95 16 16 Si 0.90 24.30 24.80 -169.99 -4.22 20.09 16 17 H -0.26 -7.27 6.37 56.52 0.36 -6.91 16 18 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 20 C 0.12 2.23 2.38 -66.81 -0.16 2.07 16 21 C -0.13 -2.18 6.28 -25.03 -0.16 -2.34 16 22 C -0.12 -1.70 6.91 -24.69 -0.17 -1.87 16 23 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 24 C -0.13 -2.33 6.27 -25.62 -0.16 -2.49 16 25 H 0.07 1.29 6.96 -51.93 -0.36 0.93 16 26 H 0.05 0.80 6.70 -51.93 -0.35 0.45 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.07 1.06 4.69 -51.93 -0.24 0.82 16 30 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 31 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.07 0.85 6.33 -51.93 -0.33 0.53 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.68 6.78 -51.93 -0.35 0.33 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 40 H 0.08 1.31 4.17 -51.93 -0.22 1.10 16 41 H 0.08 1.66 6.39 -51.93 -0.33 1.33 16 42 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.72 7.31 -51.93 -0.38 1.34 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.87 346.68 -7.57 -39.45 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.53 Total: 1.87 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.67 Total: -14.75 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.55 Total: -36.87 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.07 Total: -15.02 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.22 Total: 20.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.87 -7.57 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308090211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.833 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds