Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46689 * 2 1 4 4 H 1.08995 * 109.47822 * 55.00265 * 3 2 1 5 5 C 1.53000 * 109.46927 * 174.99995 * 3 2 1 6 6 C 1.53000 * 109.47251 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47355 * 300.00059 * 6 5 3 8 8 H 1.08998 * 109.46837 * 299.99770 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 10 10 O 1.21283 * 120.00367 * 359.97438 * 9 7 6 11 11 N 1.34784 * 119.99992 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99897 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46989 * 59.99821 * 13 12 11 15 15 C 1.53000 * 109.47124 * 300.00146 * 13 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.46989 * 59.99781 * 7 6 5 25 25 C 1.53000 * 109.47251 * 300.00283 * 24 7 6 26 26 H 1.08996 * 109.47538 * 60.00201 * 1 2 3 27 27 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47513 * 299.99597 * 1 2 3 29 29 H 1.08999 * 109.47136 * 240.00162 * 2 1 3 30 30 H 1.08996 * 109.47538 * 119.99799 * 2 1 3 31 31 H 1.09000 * 109.47156 * 60.00290 * 5 3 2 32 32 H 1.08995 * 109.47095 * 300.00011 * 5 3 2 33 33 H 1.08999 * 109.47677 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47033 * 60.00412 * 6 5 3 35 35 H 0.96991 * 119.99637 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47239 * 59.99631 * 12 11 9 37 37 H 1.08998 * 109.47134 * 299.99061 * 12 11 9 38 38 H 1.08997 * 109.47359 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47356 * 300.00069 * 14 13 12 40 40 H 1.09000 * 109.47156 * 59.99794 * 14 13 12 41 41 H 1.09002 * 109.47106 * 299.99750 * 15 13 12 42 42 H 1.08998 * 109.47089 * 59.99697 * 15 13 12 43 43 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47156 * 59.99794 * 24 7 6 46 46 H 1.08995 * 109.47095 * 180.02562 * 24 7 6 47 47 H 1.09000 * 109.46641 * 299.99826 * 25 24 7 48 48 H 1.08994 * 109.47288 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 6 4.0747 2.8869 0.1251 7 6 3.6700 3.5704 -1.1825 8 1 4.1046 3.0311 -2.0241 9 6 4.1718 4.9914 -1.1829 10 8 4.7917 5.4159 -0.2308 11 7 3.9308 5.7910 -2.2408 12 6 4.4192 7.1722 -2.2413 13 6 4.0143 7.8557 -3.5489 14 6 2.4895 7.8538 -3.6745 15 6 4.6243 7.0987 -4.7303 16 6 4.5161 9.2767 -3.5492 17 1 5.0689 9.6544 -2.7018 18 6 4.2695 10.0947 -4.6315 19 7 3.5968 9.6346 -5.6637 20 14 4.8909 11.8563 -4.6315 21 1 4.4980 12.5197 -5.9007 22 1 4.2982 12.5902 -3.4847 23 1 6.3708 11.8591 -4.5095 24 6 2.1452 3.5686 -1.3083 25 6 1.6351 2.1261 -1.3076 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9993 0.9055 -0.7161 32 1 3.8531 0.9571 1.0571 33 1 5.1610 2.8884 0.2151 34 1 3.6401 3.4263 0.9668 35 1 3.4348 5.4516 -3.0021 36 1 5.5055 7.1735 -2.1522 37 1 3.9848 7.7114 -1.3996 38 1 2.2010 8.3404 -4.6063 39 1 2.1261 6.8261 -3.6741 40 1 2.0549 8.3931 -2.8329 41 1 5.7106 7.1000 -4.6408 42 1 4.2610 6.0710 -4.7299 43 1 4.3355 7.5853 -5.6618 44 1 3.4230 10.2102 -6.4249 45 1 1.7105 4.1079 -0.4667 46 1 1.8568 4.0551 -2.2400 47 1 2.0698 1.5867 -2.1492 48 1 0.5489 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315762501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = -88.065886 kcal Electronic energy + Delta-G solvation = -23015.774278 eV Core-core repulsion = 19875.547250 eV Total energy + Delta-G solvation = -3140.227028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98604 -38.17887 -36.31621 -33.99131 -33.23926 -31.13166 -30.58195 -29.32256 -25.77260 -25.72190 -25.14157 -23.85445 -22.71512 -21.31780 -20.06509 -19.53609 -18.75493 -16.97137 -15.87034 -15.61174 -15.12249 -14.84945 -14.67088 -14.39214 -14.08564 -13.76539 -13.56018 -13.34619 -12.89907 -12.81816 -12.54797 -12.26312 -12.09215 -11.90042 -11.74575 -11.40356 -11.27674 -11.18065 -11.15970 -10.90094 -10.83270 -10.72646 -10.60176 -10.37604 -10.34799 -10.19364 -10.03058 -9.62508 -9.45596 -9.11273 -8.78117 -8.42807 -8.27039 -6.01654 -4.11702 3.12235 3.30305 3.34474 3.38063 3.80704 4.40409 4.50986 4.53535 4.65343 4.91873 4.96187 5.10934 5.20383 5.24963 5.31106 5.38326 5.40041 5.44874 5.48224 5.55989 5.73448 5.74780 5.79881 5.90284 5.99976 6.05572 6.07469 6.16760 6.19179 6.27490 6.31632 6.35158 6.42900 6.52312 6.80528 6.82991 6.95171 7.02699 7.08222 7.36582 7.56286 7.69765 8.01521 8.09673 8.18789 8.39547 8.77515 8.89302 9.54008 10.99717 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.003263 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.949033 B = 8579.138153 C = 9010.448668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.114 4.114 6 C -0.097 4.097 7 C -0.106 4.106 8 H 0.092 0.908 9 C 0.506 3.494 10 O -0.555 6.555 11 N -0.717 5.717 12 C 0.131 3.869 13 C 0.057 3.943 14 C -0.130 4.130 15 C -0.131 4.131 16 C -0.507 4.507 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.111 4.111 25 C -0.112 4.112 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.260 0.740 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -17.846 6.752 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.135 4.135 7 C -0.128 4.128 8 H 0.110 0.890 9 C 0.292 3.708 10 O -0.433 6.433 11 N -0.367 5.367 12 C 0.009 3.991 13 C 0.056 3.944 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.856 -17.443 7.233 19.498 hybrid contribution 0.123 0.884 -0.461 1.004 sum -4.734 -16.559 6.772 18.506 Atomic orbital electron populations 1.21829 0.96037 1.01316 1.02018 1.21567 0.95797 0.96520 1.01791 1.21232 0.95680 0.95620 0.98323 0.91149 1.21614 0.95026 0.96730 1.01737 1.21307 1.01319 0.94547 0.96333 1.21342 0.97136 0.93723 1.00577 0.89013 1.20596 0.79871 0.87573 0.82776 1.90650 1.41557 1.76188 1.34946 1.46337 1.56572 1.14193 1.19606 1.21692 0.97986 0.79001 1.00449 1.18339 0.92960 0.94316 0.88799 1.21822 0.97423 0.96584 1.02929 1.21828 0.98274 0.95578 1.03153 1.20962 1.35157 0.95373 1.03029 0.92530 1.24879 0.94889 0.98336 0.95385 1.69796 1.40097 1.35878 1.06739 0.86634 0.79325 0.84697 0.77208 1.21320 1.20285 1.20289 1.21527 0.93312 0.97323 1.02721 1.21626 1.00748 0.95158 0.97454 0.92383 0.93092 0.92831 0.92078 0.92202 0.92019 0.91919 0.91373 0.91331 0.76791 0.92887 0.92870 0.89627 0.97533 0.95491 0.95477 0.97526 0.89608 0.92963 0.91424 0.91285 0.91821 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.78 2.19 -90.62 -0.20 -0.98 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 6 C -0.10 -1.17 4.49 -26.73 -0.12 -1.29 16 7 C -0.11 -1.35 2.53 -91.77 -0.23 -1.58 16 8 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.51 8.81 7.15 -10.98 -0.08 8.73 16 10 O -0.55 -11.75 15.98 5.55 0.09 -11.66 16 11 N -0.72 -12.86 4.85 -60.29 -0.29 -13.15 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 13 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.51 -13.37 8.01 -34.44 -0.28 -13.65 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.68 9.35 55.43 0.52 -23.17 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.11 -1.23 5.10 -26.73 -0.14 -1.37 16 25 C -0.11 -1.01 4.96 -26.73 -0.13 -1.14 16 26 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.40 6.44 5.58 -40.82 -0.23 6.21 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 43 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -28.12 360.43 -8.91 -37.03 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.95 Total: 3.50 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.69 Total: -13.79 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.23 Total: -36.31 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.12 -8.91 -37.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315762501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.037 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds