Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46689 * 2 1 4 4 H 1.08995 * 109.47822 * 55.00265 * 3 2 1 5 5 C 1.53000 * 109.46927 * 174.99995 * 3 2 1 6 6 C 1.53000 * 109.47251 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47355 * 300.00059 * 6 5 3 8 8 H 1.08998 * 109.46837 * 299.99770 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 10 10 O 1.21283 * 120.00367 * 359.97438 * 9 7 6 11 11 N 1.34784 * 119.99992 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99897 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46989 * 59.99821 * 13 12 11 15 15 C 1.53000 * 109.47124 * 300.00146 * 13 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.46989 * 59.99781 * 7 6 5 25 25 C 1.53000 * 109.47251 * 300.00283 * 24 7 6 26 26 H 1.08996 * 109.47538 * 60.00201 * 1 2 3 27 27 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47513 * 299.99597 * 1 2 3 29 29 H 1.08999 * 109.47136 * 240.00162 * 2 1 3 30 30 H 1.08996 * 109.47538 * 119.99799 * 2 1 3 31 31 H 1.09000 * 109.47156 * 60.00290 * 5 3 2 32 32 H 1.08995 * 109.47095 * 300.00011 * 5 3 2 33 33 H 1.08999 * 109.47677 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47033 * 60.00412 * 6 5 3 35 35 H 0.96991 * 119.99637 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47239 * 59.99631 * 12 11 9 37 37 H 1.08998 * 109.47134 * 299.99061 * 12 11 9 38 38 H 1.08997 * 109.47359 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47356 * 300.00069 * 14 13 12 40 40 H 1.09000 * 109.47156 * 59.99794 * 14 13 12 41 41 H 1.09002 * 109.47106 * 299.99750 * 15 13 12 42 42 H 1.08998 * 109.47089 * 59.99697 * 15 13 12 43 43 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47156 * 59.99794 * 24 7 6 46 46 H 1.08995 * 109.47095 * 180.02562 * 24 7 6 47 47 H 1.09000 * 109.46641 * 299.99826 * 25 24 7 48 48 H 1.08994 * 109.47288 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 6 4.0747 2.8869 0.1251 7 6 3.6700 3.5704 -1.1825 8 1 4.1046 3.0311 -2.0241 9 6 4.1718 4.9914 -1.1829 10 8 4.7917 5.4159 -0.2308 11 7 3.9308 5.7910 -2.2408 12 6 4.4192 7.1722 -2.2413 13 6 4.0143 7.8557 -3.5489 14 6 2.4895 7.8538 -3.6745 15 6 4.6243 7.0987 -4.7303 16 6 4.5161 9.2767 -3.5492 17 1 5.0689 9.6544 -2.7018 18 6 4.2695 10.0947 -4.6315 19 7 3.5968 9.6346 -5.6637 20 14 4.8909 11.8563 -4.6315 21 1 4.4980 12.5197 -5.9007 22 1 4.2982 12.5902 -3.4847 23 1 6.3708 11.8591 -4.5095 24 6 2.1452 3.5686 -1.3083 25 6 1.6351 2.1261 -1.3076 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9993 0.9055 -0.7161 32 1 3.8531 0.9571 1.0571 33 1 5.1610 2.8884 0.2151 34 1 3.6401 3.4263 0.9668 35 1 3.4348 5.4516 -3.0021 36 1 5.5055 7.1735 -2.1522 37 1 3.9848 7.7114 -1.3996 38 1 2.2010 8.3404 -4.6063 39 1 2.1261 6.8261 -3.6741 40 1 2.0549 8.3931 -2.8329 41 1 5.7106 7.1000 -4.6408 42 1 4.2610 6.0710 -4.7299 43 1 4.3355 7.5853 -5.6618 44 1 3.4230 10.2102 -6.4249 45 1 1.7105 4.1079 -0.4667 46 1 1.8568 4.0551 -2.2400 47 1 2.0698 1.5867 -2.1492 48 1 0.5489 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315762501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = -101.945835 kcal Electronic energy + Delta-G solvation = -23016.376158 eV Core-core repulsion = 19875.547250 eV Total energy + Delta-G solvation = -3140.828907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23927 -39.27284 -38.04093 -35.07408 -34.73217 -32.76161 -31.62276 -30.17162 -27.57131 -27.50081 -26.87547 -24.88904 -23.55122 -22.31548 -20.98873 -20.66540 -20.53370 -18.40935 -17.68110 -16.83846 -16.59072 -16.46400 -15.68861 -15.53609 -15.09596 -14.93530 -14.78139 -14.54442 -14.33277 -14.06172 -13.86990 -13.59602 -13.18889 -13.12220 -13.00752 -12.73002 -12.67506 -12.63637 -12.41922 -12.25980 -12.13988 -12.09102 -11.97741 -11.61354 -11.49238 -11.32886 -11.26879 -11.16848 -10.80402 -10.74863 -10.52778 -10.40346 -9.91991 -8.03198 -6.19075 1.43123 1.44209 1.50927 1.71911 2.34446 2.50944 3.20179 3.65233 3.74404 3.79950 4.09270 4.16981 4.24993 4.41261 4.47513 4.48221 4.50675 4.58429 4.61147 4.66161 4.71771 4.77989 4.84320 4.96823 4.99601 5.04930 5.08322 5.11985 5.18405 5.19173 5.22542 5.26079 5.29051 5.31954 5.37128 5.39858 5.43911 5.59442 5.60659 5.66033 5.66581 5.67987 6.14517 6.20943 6.42825 6.70348 6.84835 7.35727 7.48572 8.95516 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.003263 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.949033 B = 8579.138153 C = 9010.448668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.089 4.089 4 H 0.061 0.939 5 C -0.106 4.106 6 C -0.095 4.095 7 C -0.096 4.096 8 H 0.115 0.885 9 C 0.503 3.497 10 O -0.596 6.596 11 N -0.710 5.710 12 C 0.147 3.853 13 C 0.053 3.947 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.532 4.532 17 H 0.042 0.958 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.281 1.281 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.108 4.108 25 C -0.107 4.107 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.408 0.592 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.261 0.739 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 -19.845 6.253 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.079 0.921 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.117 4.117 8 H 0.133 0.867 9 C 0.291 3.709 10 O -0.478 6.478 11 N -0.361 5.361 12 C 0.023 3.977 13 C 0.052 3.948 14 C -0.177 4.177 15 C -0.179 4.179 16 C -0.571 4.571 17 H 0.061 0.939 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.771 3.229 21 H -0.207 1.207 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.246 0.754 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.679 -19.465 6.720 21.361 hybrid contribution 0.387 1.512 -0.266 1.583 sum -5.292 -17.953 6.454 19.798 Atomic orbital electron populations 1.21835 0.95783 1.01769 1.01888 1.21526 0.95975 0.95437 1.02322 1.21213 0.95091 0.96502 0.97916 0.92083 1.21571 0.95471 0.94540 1.02766 1.21289 1.00458 0.96321 0.95290 1.21378 0.98368 0.90196 1.01790 0.86734 1.21494 0.78687 0.89158 0.81544 1.90633 1.43355 1.77355 1.36407 1.46176 1.56662 1.12812 1.20455 1.21241 0.96731 0.80846 0.98871 1.18335 0.93467 0.93242 0.89760 1.21660 0.96725 0.98149 1.01187 1.21672 0.97637 0.97038 1.01504 1.21260 1.35601 0.97360 1.02839 0.93936 1.25443 0.95135 1.01269 0.95207 1.69895 1.40288 1.36670 1.06841 0.85831 0.78681 0.81155 0.77229 1.20651 1.20316 1.20312 1.21535 0.91701 0.99025 1.02380 1.21611 1.01376 0.93464 0.97994 0.92303 0.92390 0.93200 0.91378 0.91861 0.90756 0.91128 0.92703 0.93200 0.75449 0.94692 0.94743 0.91830 0.94356 0.96477 0.96410 0.94359 0.91798 0.92961 0.92758 0.90840 0.90550 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.67 71.98 0.70 -1.09 16 2 C -0.12 -1.37 5.40 30.59 0.17 -1.20 16 3 C -0.09 -1.31 2.19 -10.79 -0.02 -1.33 16 4 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.11 -1.71 5.20 30.59 0.16 -1.55 16 6 C -0.10 -2.20 4.49 30.59 0.14 -2.06 16 7 C -0.10 -2.28 2.53 -11.54 -0.03 -2.30 16 8 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 9 C 0.50 17.22 7.15 87.65 0.63 17.85 16 10 O -0.60 -25.67 15.98 -3.04 -0.05 -25.72 16 11 N -0.71 -24.79 4.85 -463.06 -2.25 -27.04 16 12 C 0.15 6.41 4.50 86.38 0.39 6.80 16 13 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 14 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 15 C -0.12 -5.38 8.08 71.98 0.58 -4.79 16 16 C -0.53 -28.50 8.01 25.60 0.21 -28.30 16 17 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 18 C 0.03 1.56 5.15 84.66 0.44 1.99 16 19 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 20 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C -0.11 -2.17 5.10 30.59 0.16 -2.01 16 25 C -0.11 -1.59 4.96 30.59 0.15 -1.44 16 26 H 0.06 0.66 6.56 -2.39 -0.02 0.65 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 35 H 0.41 12.31 5.58 -92.71 -0.52 11.79 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 39 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 43 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 44 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 47 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.03 6.56 -2.39 -0.02 1.01 16 Total: -1.00 -60.97 360.43 4.53 -56.45 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.39 Total: 20.94 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.21 Total: -21.74 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.05 Total: -74.81 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.97 4.53 -56.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315762501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.498 kcal (2) G-P(sol) polarization free energy of solvation -60.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds