Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46950 * 119.99589 * 2 1 3 5 5 H 1.09005 * 108.79591 * 296.45366 * 4 2 1 6 6 C 1.54243 * 108.89558 * 177.90198 * 4 2 1 7 7 C 1.50474 * 108.53026 * 159.26278 * 6 4 2 8 8 C 1.54065 * 112.49595 * 94.15023 * 7 6 4 9 9 C 1.54071 * 112.81779 * 318.28697 * 8 7 6 10 10 H 1.08996 * 108.87733 * 79.06526 * 9 8 7 11 11 N 1.46502 * 108.87726 * 197.50881 * 9 8 7 12 12 C 1.34776 * 119.99772 * 277.97409 * 11 9 8 13 13 O 1.21281 * 120.00331 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99884 * 180.02562 * 12 11 9 15 15 C 1.52990 * 109.47236 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47236 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99780 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99681 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00418 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47072 * 90.00128 * 20 18 16 22 22 H 1.48500 * 109.47253 * 210.00343 * 20 18 16 23 23 H 1.48501 * 109.46990 * 329.99969 * 20 18 16 24 24 C 1.50472 * 112.49559 * 318.28358 * 9 8 7 25 25 C 1.45536 * 108.89880 * 55.01702 * 4 2 1 26 26 H 1.09002 * 109.47182 * 299.99918 * 1 2 3 27 27 H 1.08999 * 109.47306 * 60.00290 * 1 2 3 28 28 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47358 * 239.99816 * 2 1 3 30 30 H 1.08996 * 109.47556 * 186.53997 * 3 2 1 31 31 H 1.09005 * 109.46913 * 306.53931 * 3 2 1 32 32 H 1.09001 * 109.47470 * 66.53342 * 3 2 1 33 33 H 1.09002 * 109.62571 * 278.98138 * 6 4 2 34 34 H 1.09006 * 109.63013 * 39.55372 * 6 4 2 35 35 H 1.08999 * 108.87204 * 333.37858 * 7 6 4 36 36 H 1.08995 * 108.88007 * 214.93015 * 7 6 4 37 37 H 1.08997 * 108.81435 * 197.42378 * 8 7 6 38 38 H 1.09002 * 108.73049 * 79.08476 * 8 7 6 39 39 H 0.97001 * 119.99981 * 97.97242 * 11 9 8 40 40 H 1.09004 * 109.46742 * 299.99793 * 14 12 11 41 41 H 1.08998 * 109.46880 * 59.99618 * 14 12 11 42 42 H 1.09004 * 109.47061 * 299.99567 * 15 14 12 43 43 H 1.08998 * 109.47524 * 59.99981 * 15 14 12 44 44 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.62794 * 334.44363 * 24 9 8 46 46 H 1.08996 * 109.79282 * 213.96200 * 24 9 8 47 47 H 1.08990 * 108.89516 * 303.44451 * 25 4 2 48 48 H 1.09005 * 108.89476 * 61.93200 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7236 -0.1632 2.1306 6 6 3.5814 -0.7599 1.2095 7 6 4.0904 -0.9848 2.6075 8 6 4.3460 -2.4739 2.9093 9 6 3.2414 -3.3940 2.3553 10 1 3.4046 -3.5374 1.2872 11 7 3.3281 -4.6945 3.0241 12 6 4.2170 -5.6135 2.5979 13 8 4.9454 -5.3638 1.6609 14 6 4.3058 -6.9516 3.2855 15 6 5.3857 -7.8005 2.6119 16 6 5.4741 -9.1388 3.2992 17 1 4.8252 -9.3614 4.1333 18 6 6.3841 -10.0786 2.8637 19 7 6.4616 -11.2463 3.4638 20 14 7.5070 -9.6934 1.4215 21 1 8.7607 -9.0744 1.9218 22 1 7.8297 -10.9485 0.6963 23 1 6.8232 -8.7511 0.4997 24 6 1.8625 -2.8294 2.5656 25 6 1.4528 -2.0519 1.2981 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1236 1.4449 -0.1170 31 1 1.5842 1.9890 -0.8257 32 1 1.7753 1.9215 0.9427 33 1 3.9106 -1.5744 0.5643 34 1 3.9619 0.1884 0.8296 35 1 3.3556 -0.6025 3.3160 36 1 5.0219 -0.4339 2.7367 37 1 4.4066 -2.6083 3.9893 38 1 5.2990 -2.7624 2.4657 39 1 2.7457 -4.8942 3.7738 40 1 4.5617 -6.8045 4.3349 41 1 3.3450 -7.4614 3.2139 42 1 5.1302 -7.9476 1.5625 43 1 6.3463 -7.2906 2.6840 44 1 7.1015 -11.9076 3.1573 45 1 1.8697 -2.1553 3.4223 46 1 1.1551 -3.6394 2.7431 47 1 0.3670 -1.9597 1.2761 48 1 1.7754 -2.6125 0.4206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331949042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -80.650340 kcal Electronic energy + Delta-G solvation = -22703.623502 eV Core-core repulsion = 19563.718036 eV Total energy + Delta-G solvation = -3139.905465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28588 -38.86869 -36.06989 -33.56392 -33.43815 -32.18410 -31.29473 -29.75395 -27.73042 -26.14446 -24.96511 -24.01535 -21.55947 -21.24208 -20.10597 -19.55032 -19.42203 -17.16250 -16.55583 -15.94007 -15.56898 -15.08974 -14.79022 -14.49338 -14.34273 -14.13241 -13.99594 -13.40295 -13.25698 -12.89074 -12.72170 -12.54048 -12.47614 -12.21102 -12.17029 -12.05273 -11.66995 -11.39717 -11.22670 -11.13539 -11.02296 -10.90855 -10.69271 -10.41588 -10.28575 -10.21737 -10.11755 -10.01083 -9.75705 -9.18312 -9.09873 -8.76012 -8.48590 -6.01136 -3.99588 3.19232 3.39462 3.45748 3.52737 3.57292 4.27232 4.39407 4.52861 4.55906 4.68221 4.85803 4.99549 5.03179 5.06098 5.09214 5.22185 5.28698 5.33426 5.34451 5.38527 5.46613 5.51203 5.55427 5.61343 5.68918 5.74442 5.79534 5.85380 5.89696 5.95960 5.98712 6.04214 6.05667 6.12207 6.13860 6.22021 6.24512 6.31542 6.36651 6.73362 6.79448 7.39866 7.46986 7.80375 7.88001 8.52947 8.73860 9.02297 9.62144 11.11764 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033235 B = 0.002988 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.282076 B = 9367.597514 C = 9494.252674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.079 4.079 5 H 0.067 0.933 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.147 3.853 10 H 0.082 0.918 11 N -0.741 5.741 12 C 0.509 3.491 13 O -0.541 6.541 14 C -0.123 4.123 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.124 4.124 25 C -0.116 4.116 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.263 0.737 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 25.939 -3.033 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.168 4.168 9 C 0.042 3.958 10 H 0.100 0.900 11 N -0.394 5.394 12 C 0.298 3.702 13 O -0.417 6.417 14 C -0.163 4.163 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.162 4.162 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.054 25.933 -3.730 28.840 hybrid contribution 0.395 -0.044 -0.248 0.469 sum -11.659 25.889 -3.978 28.670 Atomic orbital electron populations 1.21952 0.95494 1.01920 1.01501 1.21225 0.95534 0.96197 0.98516 1.21902 1.01151 0.95975 1.01498 1.20160 0.95330 0.96344 0.97872 0.91473 1.21534 0.94630 1.02175 0.97419 1.21265 1.00924 0.95818 0.97005 1.22321 0.99474 0.93937 1.01021 1.20740 0.94105 0.82656 0.98281 0.90018 1.46451 1.40919 1.15277 1.36768 1.21519 0.78633 0.86524 0.83567 1.90638 1.42141 1.80158 1.28800 1.21665 1.03056 0.91014 1.00569 1.19356 0.93336 0.94501 0.96403 1.21130 1.20798 0.97205 1.17074 0.90967 1.24978 0.96921 0.94804 0.96592 1.69913 1.36785 1.06091 1.41544 0.86790 0.81441 0.77774 0.83522 1.20261 1.21468 1.18523 1.21640 0.95781 1.00042 0.98741 1.20598 1.00941 0.95977 0.97854 0.92803 0.92981 0.92153 0.91236 0.92363 0.93021 0.92805 0.91387 0.91449 0.92247 0.92344 0.92087 0.91542 0.76942 0.89765 0.89727 0.95877 0.96339 0.92746 0.91162 0.91018 0.91345 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.64 37.16 0.32 -0.65 16 2 C -0.10 -0.68 2.48 -90.62 -0.22 -0.90 16 3 C -0.15 -0.96 8.78 37.16 0.33 -0.63 16 4 C -0.08 -0.59 1.33 -93.49 -0.12 -0.72 16 5 H 0.07 0.50 7.47 -51.93 -0.39 0.11 16 6 C -0.12 -1.04 4.91 -27.34 -0.13 -1.17 16 7 C -0.11 -1.02 5.31 -27.44 -0.15 -1.16 16 8 C -0.13 -1.50 5.37 -25.62 -0.14 -1.64 16 9 C 0.15 1.75 1.94 -68.63 -0.13 1.62 16 10 H 0.08 1.17 6.08 -51.93 -0.32 0.86 16 11 N -0.74 -9.97 4.95 -54.49 -0.27 -10.24 16 12 C 0.51 9.38 7.74 -10.98 -0.09 9.30 16 13 O -0.54 -12.11 15.65 5.56 0.09 -12.02 16 14 C -0.12 -2.43 5.64 -27.89 -0.16 -2.58 16 15 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 16 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 20 Si 0.88 22.89 27.47 -169.99 -4.67 18.22 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 24 C -0.12 -1.09 5.17 -27.34 -0.14 -1.23 16 25 C -0.12 -0.95 4.17 -29.60 -0.12 -1.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.39 6.25 -51.93 -0.32 0.07 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.38 6.39 -51.93 -0.33 0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.70 6.98 -51.93 -0.36 0.34 16 34 H 0.07 0.53 5.85 -51.93 -0.30 0.22 16 35 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.40 4.20 8.48 -40.82 -0.35 3.85 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 43 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 46 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 47 H 0.07 0.50 5.88 -51.93 -0.31 0.19 16 48 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -33.27 357.41 -8.73 -42.00 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.76 Total: -1.33 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.28 Total: -14.47 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.50 Total: -37.77 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.27 -8.73 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331949042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.650 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds