Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46743 * 2 1 4 4 C 1.53002 * 109.46874 * 119.99827 * 2 1 3 5 5 H 1.08996 * 109.46643 * 186.20173 * 4 2 1 6 6 C 1.52995 * 109.46993 * 66.20005 * 4 2 1 7 7 C 1.53005 * 109.47150 * 66.36949 * 6 4 2 8 8 C 1.54262 * 110.48611 * 186.13464 * 7 6 4 9 9 C 1.53874 * 106.63877 * 217.73377 * 8 7 6 10 10 C 1.54269 * 106.60010 * 359.97274 * 9 8 7 11 11 C 1.54890 * 104.19308 * 23.61129 * 10 9 8 12 12 C 1.50702 * 109.47046 * 306.19963 * 4 2 1 13 13 O 1.21283 * 119.99875 * 108.33968 * 12 4 2 14 14 N 1.34777 * 120.00298 * 288.33794 * 12 4 2 15 15 C 1.46497 * 120.00157 * 184.87468 * 14 12 4 16 16 C 1.53002 * 109.46923 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.46869 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00049 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31525 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00141 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46963 * 120.00363 * 21 19 17 24 24 H 1.48499 * 109.46960 * 240.00047 * 21 19 17 25 25 H 1.08989 * 109.47549 * 303.41258 * 1 2 3 26 26 H 1.09006 * 109.47425 * 63.41569 * 1 2 3 27 27 H 1.09000 * 109.47070 * 183.40979 * 1 2 3 28 28 H 1.08992 * 109.47156 * 239.99984 * 2 1 3 29 29 H 1.08997 * 109.46505 * 178.87778 * 3 2 1 30 30 H 1.08992 * 109.46876 * 298.87631 * 3 2 1 31 31 H 1.09000 * 109.47052 * 58.87651 * 3 2 1 32 32 H 1.08992 * 109.47354 * 306.36565 * 6 4 2 33 33 H 1.08996 * 109.47160 * 186.36110 * 6 4 2 34 34 H 1.09007 * 110.53442 * 308.74421 * 7 6 4 35 35 H 1.08999 * 110.03388 * 98.42517 * 8 7 6 36 36 H 1.09001 * 110.03484 * 337.03945 * 8 7 6 37 37 H 1.09002 * 110.03304 * 119.26038 * 9 8 7 38 38 H 1.09002 * 110.03187 * 240.69000 * 9 8 7 39 39 H 1.09003 * 110.48702 * 142.28765 * 10 9 8 40 40 H 1.08998 * 110.48527 * 264.80053 * 10 9 8 41 41 H 1.09003 * 110.75659 * 80.37466 * 11 10 9 42 42 H 1.09003 * 110.75726 * 203.55838 * 11 10 9 43 43 H 0.97000 * 119.99427 * 4.87376 * 14 12 4 44 44 H 1.08999 * 109.47024 * 300.00152 * 15 14 12 45 45 H 1.08997 * 109.46551 * 60.00228 * 15 14 12 46 46 H 1.08999 * 109.47453 * 299.99961 * 16 15 14 47 47 H 1.09000 * 109.46576 * 60.00501 * 16 15 14 48 48 H 0.96993 * 119.99777 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1242 -0.6261 1.3065 6 6 1.6611 -2.2016 1.1738 7 6 2.4198 -2.8642 0.0222 8 6 1.9425 -4.3180 -0.1732 9 6 3.1887 -5.1465 -0.5315 10 6 4.3807 -4.1674 -0.5423 11 6 3.9235 -3.0023 0.3702 12 6 1.4162 -0.1049 2.4749 13 8 0.5719 -0.7139 3.0971 14 7 1.7966 1.1231 2.8797 15 6 1.2702 1.6784 4.1289 16 6 1.8569 3.0734 4.3541 17 6 1.3158 3.6444 5.6395 18 1 0.6231 3.0697 6.2363 19 6 1.7050 4.9005 6.0536 20 7 2.5482 5.6007 5.3265 21 14 1.0338 5.6086 7.6465 22 1 0.1095 4.6295 8.2727 23 1 2.1578 5.8914 8.5749 24 1 0.3010 6.8677 7.3585 25 1 -0.3634 0.5658 0.8577 26 1 -0.3634 0.4599 -0.9191 27 1 -0.3633 -1.0258 0.0611 28 1 1.8933 -0.5138 -0.8899 29 1 3.1297 1.4426 0.0201 30 1 1.6931 1.9505 -0.8998 31 1 1.6602 1.9622 0.8797 32 1 0.5886 -2.2940 1.0031 33 1 1.9234 -2.6920 2.1113 34 1 2.2923 -2.2939 -0.8980 35 1 1.2159 -4.3667 -0.9842 36 1 1.4979 -4.6922 0.7491 37 1 3.3493 -5.9222 0.2173 38 1 3.0668 -5.5973 -1.5164 39 1 5.2709 -4.6455 -0.1334 40 1 4.5716 -3.8099 -1.5541 41 1 4.0540 -3.2607 1.4211 42 1 4.4646 -2.0874 0.1289 43 1 2.4190 1.6391 2.3438 44 1 0.1840 1.7462 4.0671 45 1 1.5470 1.0297 4.9599 46 1 2.9430 3.0052 4.4161 47 1 1.5803 3.7223 3.5230 48 1 2.8223 6.4843 5.6181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342631279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = -88.111818 kcal Electronic energy + Delta-G solvation = -22858.719119 eV Core-core repulsion = 19718.490100 eV Total energy + Delta-G solvation = -3140.229019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16124 -38.32196 -35.91462 -34.88678 -32.82634 -31.64707 -29.73226 -28.89073 -27.69006 -27.15513 -24.86629 -23.28267 -21.69953 -20.82961 -20.60549 -19.85396 -18.80438 -16.65089 -16.36226 -16.06475 -15.67042 -15.00580 -14.94063 -14.50229 -14.42522 -13.96660 -13.68609 -13.53088 -13.26036 -12.92082 -12.73567 -12.31540 -12.13382 -12.01527 -11.76386 -11.41182 -11.25926 -11.20591 -11.15924 -11.05324 -10.99905 -10.88178 -10.72062 -10.62693 -10.56139 -10.38617 -10.30132 -10.20587 -9.71885 -9.38704 -9.05832 -8.50503 -8.29811 -6.09212 -4.11813 3.10493 3.28260 3.35797 3.40888 3.74551 4.37903 4.41822 4.47859 4.56742 4.76816 4.82636 4.92911 5.15034 5.19789 5.26049 5.27876 5.33365 5.39097 5.47300 5.49838 5.59027 5.60419 5.63496 5.69619 5.73212 5.81070 5.90598 5.90875 5.94733 6.01183 6.06877 6.11707 6.15975 6.20627 6.32877 6.36011 6.38348 6.40227 6.49394 6.76673 6.99433 7.52979 7.62663 7.89495 8.09082 8.29309 8.74500 8.94641 9.53079 11.02430 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.003091 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.638944 B = 9057.800619 C = 9188.638901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.168 4.168 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.092 4.092 7 C -0.093 4.093 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.123 4.123 12 C 0.513 3.487 13 O -0.552 6.552 14 N -0.726 5.726 15 C 0.120 3.880 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.398 0.602 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -16.451 -15.524 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.226 4.226 4 C -0.127 4.127 5 H 0.109 0.891 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.159 4.159 9 C -0.163 4.163 10 C -0.163 4.163 11 C -0.160 4.160 12 C 0.299 3.701 13 O -0.430 6.430 14 N -0.378 5.378 15 C -0.003 4.003 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.234 0.766 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.070 -16.710 -15.043 22.579 hybrid contribution 0.065 0.827 0.641 1.049 sum 2.135 -15.883 -14.401 21.546 Atomic orbital electron populations 1.21931 0.94820 1.02258 1.01917 1.21082 0.96429 0.96076 0.96690 1.22190 1.01208 0.95990 1.03165 1.21479 1.01217 0.96424 0.93590 0.89088 1.21462 1.00821 0.92516 0.98188 1.22106 0.94767 0.95641 0.98646 1.22191 0.97380 0.94837 1.01469 1.22130 0.94974 0.98077 1.01069 1.22349 0.97670 0.96442 0.99822 1.22627 0.95498 0.98116 0.99774 1.20504 0.82398 0.81611 0.85602 1.90652 1.32570 1.62347 1.57427 1.46680 1.47962 1.17261 1.25896 1.21696 0.98250 0.96987 0.83332 1.19319 0.96561 0.88963 0.97627 1.21097 1.27172 1.01180 1.06417 0.92239 1.24999 0.95018 0.96956 0.97352 1.69968 1.33145 1.11979 1.38233 0.86467 0.78864 0.79025 0.83284 1.19593 1.20939 1.20932 0.92293 0.92744 0.92171 0.90142 0.92275 0.92161 0.91168 0.90820 0.91348 0.90484 0.92065 0.91635 0.92075 0.92224 0.91978 0.91849 0.91348 0.91567 0.76588 0.92668 0.92800 0.96033 0.96014 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.63 37.16 0.32 -1.49 16 2 C -0.08 -0.90 2.60 -90.62 -0.24 -1.14 16 3 C -0.17 -1.84 8.28 37.16 0.31 -1.53 16 4 C -0.11 -1.29 1.96 -91.77 -0.18 -1.47 16 5 H 0.09 1.01 7.36 -51.93 -0.38 0.63 16 6 C -0.09 -1.06 3.23 -26.73 -0.09 -1.15 16 7 C -0.09 -0.84 2.75 -88.92 -0.24 -1.09 16 8 C -0.12 -1.03 6.37 -25.62 -0.16 -1.19 16 9 C -0.12 -0.96 6.80 -25.61 -0.17 -1.13 16 10 C -0.13 -0.96 6.83 -25.07 -0.17 -1.13 16 11 C -0.12 -1.06 5.69 -24.70 -0.14 -1.20 16 12 C 0.51 8.65 5.40 -10.98 -0.06 8.60 16 13 O -0.55 -11.31 16.06 5.55 0.09 -11.22 16 14 N -0.73 -12.82 4.64 -60.29 -0.28 -13.10 16 15 C 0.12 2.59 5.62 -4.04 -0.02 2.56 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 6.34 -51.93 -0.33 0.37 16 28 H 0.08 0.73 6.23 -51.93 -0.32 0.40 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.92 5.35 -51.93 -0.28 0.64 16 32 H 0.07 0.92 6.27 -51.93 -0.33 0.59 16 33 H 0.07 0.89 7.94 -51.93 -0.41 0.47 16 34 H 0.08 0.66 6.24 -51.93 -0.32 0.34 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 42 H 0.07 0.55 7.94 -51.93 -0.41 0.13 16 43 H 0.40 6.26 6.04 -40.82 -0.25 6.01 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -30.62 365.09 -9.22 -39.84 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.84 Total: 2.45 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.40 Total: -14.48 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.46 Total: -38.54 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.62 -9.22 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342631279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.276 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds