Wall clock time and date at job start Tue Mar 31 2020 05:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46644 * 2 1 4 4 C 1.52999 * 109.47435 * 240.00395 * 2 1 3 5 5 C 1.52993 * 109.46955 * 119.99696 * 2 1 3 6 6 N 1.46504 * 109.47118 * 54.19123 * 5 2 1 7 7 C 1.46500 * 119.99690 * 275.72552 * 6 5 2 8 8 C 1.50699 * 109.47346 * 270.00153 * 7 6 5 9 9 H 1.07999 * 119.99983 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00165 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00105 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00269 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46784 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47249 * 120.00290 * 12 10 8 15 15 H 1.48503 * 109.47225 * 240.00208 * 12 10 8 16 16 C 1.34773 * 120.00241 * 95.73057 * 6 5 2 17 17 O 1.21282 * 119.99921 * 185.24493 * 16 6 5 18 18 C 1.50697 * 119.99882 * 5.51306 * 16 6 5 19 19 C 1.53005 * 109.46942 * 174.03931 * 18 16 6 20 20 C 1.53000 * 109.46932 * 180.02562 * 19 18 16 21 21 C 1.53778 * 113.61569 * 274.13643 * 20 19 18 22 22 C 1.53952 * 87.02380 * 220.04988 * 21 20 19 23 23 C 1.53780 * 113.61110 * 176.53339 * 20 19 18 24 24 H 1.08997 * 109.47484 * 299.99810 * 1 2 3 25 25 H 1.08998 * 109.47192 * 60.00056 * 1 2 3 26 26 H 1.09007 * 109.47025 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46786 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47280 * 299.99890 * 3 2 1 29 29 H 1.08997 * 109.47025 * 59.99909 * 3 2 1 30 30 H 1.09003 * 109.46795 * 303.96744 * 4 2 1 31 31 H 1.08992 * 109.47277 * 63.96420 * 4 2 1 32 32 H 1.09001 * 109.47101 * 183.97078 * 4 2 1 33 33 H 1.09000 * 109.47893 * 294.18820 * 5 2 1 34 34 H 1.09005 * 109.47045 * 174.18442 * 5 2 1 35 35 H 1.09005 * 109.47121 * 30.00194 * 7 6 5 36 36 H 1.09000 * 109.46868 * 150.00216 * 7 6 5 37 37 H 0.96995 * 120.00665 * 179.97438 * 11 10 8 38 38 H 1.08993 * 109.47577 * 294.04534 * 18 16 6 39 39 H 1.09006 * 109.47087 * 54.04848 * 18 16 6 40 40 H 1.08993 * 109.47476 * 300.00664 * 19 18 16 41 41 H 1.09001 * 109.46677 * 60.00974 * 19 18 16 42 42 H 1.08999 * 112.85353 * 45.33811 * 20 19 18 43 43 H 1.09003 * 113.61927 * 334.57150 * 21 20 19 44 44 H 1.09007 * 113.61078 * 105.47273 * 21 20 19 45 45 H 1.09000 * 113.53983 * 270.81511 * 22 21 20 46 46 H 1.09000 * 113.67127 * 139.93215 * 22 21 20 47 47 H 1.09005 * 113.61709 * 254.53162 * 23 20 19 48 48 H 1.08998 * 113.62181 * 25.35122 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0399 -0.7212 1.2492 6 7 1.4408 -2.0561 1.3212 7 6 0.1129 -2.2319 1.9146 8 6 0.2534 -2.4909 3.3925 9 1 1.2337 -2.5210 3.8447 10 6 -0.8697 -2.6883 4.1677 11 7 -2.0635 -2.6511 3.6172 12 14 -0.6956 -3.0099 5.9995 13 1 0.7428 -3.0023 6.3688 14 1 -1.4066 -1.9496 6.7580 15 1 -1.2845 -4.3330 6.3279 16 6 2.1111 -3.1224 0.8417 17 8 1.5781 -4.2115 0.8141 18 6 3.5251 -2.9627 0.3455 19 6 4.1020 -4.3366 -0.0016 20 6 5.5378 -4.1745 -0.5048 21 6 5.6329 -3.8761 -2.0104 22 6 6.8446 -4.8253 -2.0403 23 6 6.2406 -5.5095 -0.8025 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6198 -1.7263 -1.2856 31 1 1.7360 -0.1679 -2.1377 32 1 3.1277 -0.7832 -1.2143 33 1 1.7641 -0.1508 2.1362 34 1 3.1250 -0.8122 1.1987 35 1 -0.4773 -1.3289 1.7584 36 1 -0.3864 -3.0785 1.4433 37 1 -2.8536 -2.7903 4.1623 38 1 3.5292 -2.3318 -0.5433 39 1 4.1328 -2.4994 1.1228 40 1 4.0979 -4.9675 0.8871 41 1 3.4944 -4.7999 -0.7790 42 1 6.1289 -3.4981 0.1126 43 1 4.7792 -4.2397 -2.5824 44 1 5.8836 -2.8393 -2.2350 45 1 7.7935 -4.3263 -1.8439 46 1 6.8768 -5.4663 -2.9213 47 1 6.9812 -5.7897 -0.0534 48 1 5.5534 -6.3209 -1.0423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344478136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:33 Heat of formation + Delta-G solvation = -43.018409 kcal Electronic energy + Delta-G solvation = -23557.295953 eV Core-core repulsion = 20419.022330 eV Total energy + Delta-G solvation = -3138.273622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64996 -38.71232 -36.94611 -33.86227 -32.57615 -32.13944 -28.29238 -27.18098 -26.75011 -26.07506 -25.61081 -25.17982 -22.84806 -21.35738 -19.45423 -19.17619 -17.72302 -16.57571 -16.28505 -15.72115 -15.26672 -15.20069 -14.48305 -14.37490 -14.04365 -13.82901 -13.54429 -12.95611 -12.69658 -12.56633 -12.48176 -12.46707 -12.12346 -11.93457 -11.56452 -11.36707 -11.32259 -11.24150 -11.14082 -10.94052 -10.81987 -10.65283 -10.56351 -10.50833 -10.38681 -10.20833 -10.07748 -10.03735 -10.01392 -9.47864 -8.74972 -8.38141 -7.51803 -6.00506 -4.04528 3.31007 3.38570 3.42089 3.55096 4.03775 4.47316 4.59340 4.63415 4.71715 4.83049 5.05575 5.07609 5.10247 5.32460 5.34346 5.39151 5.50184 5.58481 5.66458 5.70010 5.73173 5.74649 5.78957 5.81071 5.87108 5.89109 5.92051 5.99543 6.04265 6.15783 6.17990 6.23297 6.27083 6.34321 6.37683 6.46006 6.49019 6.60943 6.63940 6.81773 7.19052 7.52459 7.65113 7.97274 8.30463 8.54345 8.96027 9.21338 9.60448 11.07204 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.005156 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.145519 B = 5428.736916 C = 6825.017612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.237 3.763 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.506 3.494 17 O -0.548 6.548 18 C -0.149 4.149 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.522 4.530 -10.817 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.199 4.199 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.118 3.882 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.293 3.707 17 O -0.426 6.426 18 C -0.189 4.189 19 C -0.130 4.130 20 C -0.129 4.129 21 C -0.175 4.175 22 C -0.181 4.181 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.018 3.933 -10.768 18.109 hybrid contribution -0.008 -0.038 1.164 1.165 sum 14.010 3.895 -9.604 17.426 Atomic orbital electron populations 1.22041 0.93897 1.03199 1.00838 1.20994 0.96924 0.95036 0.95835 1.21803 1.00469 0.95440 1.01739 1.22013 1.00145 1.00787 0.96960 1.21519 0.96898 0.84739 0.97238 1.48148 1.20610 1.05415 1.58354 1.19481 0.77758 0.98390 0.92573 1.21522 0.92846 1.48709 0.93256 0.92610 1.24916 0.95149 0.95323 0.98704 1.69940 0.97557 1.50145 1.35767 0.86491 0.78093 0.77876 0.85245 1.19868 1.21025 1.20938 1.20395 0.87678 0.84492 0.78114 1.90647 1.69811 1.25884 1.56236 1.21950 0.94857 0.99656 1.02434 1.21301 0.93628 0.96141 1.01974 1.22584 0.96647 0.97552 0.96073 1.23019 0.98372 0.99402 0.96736 1.22839 0.97861 0.98945 0.98483 1.22933 0.99660 0.97201 0.97751 0.92286 0.93851 0.91024 0.92949 0.92842 0.92476 0.92386 0.93058 0.92742 0.90398 0.91503 0.93771 0.94140 0.92875 0.88929 0.90063 0.91411 0.91251 0.89503 0.90073 0.91788 0.90544 0.91809 0.91805 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 6.98 37.16 0.26 -2.03 16 2 C -0.09 -1.21 0.85 -154.51 -0.13 -1.34 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.22 16 4 C -0.14 -1.82 6.84 37.16 0.25 -1.57 16 5 C 0.12 1.96 4.58 -4.04 -0.02 1.94 16 6 N -0.59 -12.39 2.00 -175.06 -0.35 -12.74 16 7 C 0.24 6.13 3.93 -5.19 -0.02 6.11 16 8 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 12 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 C 0.51 10.51 6.40 -10.99 -0.07 10.44 16 17 O -0.55 -13.90 15.54 5.56 0.09 -13.81 16 18 C -0.15 -2.23 4.06 -27.88 -0.11 -2.35 16 19 C -0.09 -1.32 4.35 -26.73 -0.12 -1.44 16 20 C -0.11 -1.21 3.64 -89.81 -0.33 -1.54 16 21 C -0.14 -1.35 7.65 -25.83 -0.20 -1.55 16 22 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 23 C -0.14 -1.40 7.65 -25.92 -0.20 -1.59 16 24 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.37 5.77 -51.92 -0.30 1.07 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 6.52 -51.93 -0.34 0.27 16 33 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 34 H 0.07 0.92 6.10 -51.93 -0.32 0.60 16 35 H 0.04 1.14 5.33 -51.93 -0.28 0.86 16 36 H 0.04 1.20 7.36 -51.93 -0.38 0.82 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.20 4.68 -51.93 -0.24 0.96 16 39 H 0.08 1.11 7.33 -51.93 -0.38 0.73 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -31.91 365.07 -8.88 -40.78 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.84 Total: 0.38 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.99 Total: -11.21 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.39 Total: -38.66 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.91 -8.88 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344478136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.234 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds