Wall clock time and date at job start Tue Mar 31 2020 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46893 * 109.47186 * 60.00040 * 13 2 1 15 15 C 1.46903 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.09004 * 109.55221 * 35.00592 * 15 14 13 17 17 C 1.53151 * 109.55677 * 274.79738 * 15 14 13 18 18 C 1.53039 * 109.41240 * 181.53059 * 17 15 14 19 19 O 1.43047 * 109.44133 * 59.32680 * 18 17 15 20 20 C 1.42578 * 113.84380 * 301.26394 * 19 18 17 21 21 C 1.53426 * 113.56578 * 286.14463 * 20 19 18 22 22 C 1.53838 * 86.97671 * 220.03947 * 21 20 19 23 23 C 1.53392 * 113.63165 * 188.22364 * 20 19 18 24 24 C 1.52835 * 113.01818 * 57.05391 * 20 19 18 25 25 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 26 26 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 30 30 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 31 31 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 35 35 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 36 36 H 1.00899 * 111.00123 * 303.95270 * 14 13 2 37 37 H 1.08994 * 109.48692 * 301.51770 * 17 15 14 38 38 H 1.09002 * 109.48090 * 61.55371 * 17 15 14 39 39 H 1.09008 * 109.47668 * 179.31057 * 18 17 15 40 40 H 1.08998 * 109.47759 * 299.32690 * 18 17 15 41 41 H 1.09002 * 113.62873 * 334.55994 * 21 20 19 42 42 H 1.08999 * 113.63451 * 105.51652 * 21 20 19 43 43 H 1.08999 * 113.60575 * 270.59576 * 22 21 20 44 44 H 1.08996 * 113.60948 * 139.72282 * 22 21 20 45 45 H 1.09002 * 113.62959 * 254.41931 * 23 20 19 46 46 H 1.09003 * 113.63333 * 25.28466 * 23 20 19 47 47 H 1.09004 * 109.65018 * 186.33558 * 24 20 19 48 48 H 1.09000 * 109.48577 * 65.99199 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5503 -0.0288 -2.4486 15 6 2.0218 -0.6945 -3.6703 16 1 2.0619 -1.7715 -3.5066 17 6 3.4182 -0.1781 -4.0293 18 6 3.8902 -0.8454 -5.3231 19 8 2.9703 -0.5455 -6.3766 20 6 1.6354 -0.9729 -6.1152 21 6 1.4435 -2.4907 -6.2308 22 6 0.0966 -2.1868 -6.9090 23 6 0.6973 -0.8316 -7.3206 24 6 1.0619 -0.3867 -4.8255 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 2.8622 -1.8819 4.7337 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 0.5438 0.0413 -2.4401 37 1 3.3813 0.9021 -4.1699 38 1 4.1122 -0.4165 -3.2233 39 1 4.8790 -0.4695 -5.5862 40 1 3.9383 -1.9248 -5.1788 41 1 2.1654 -2.9734 -6.8897 42 1 1.3447 -2.9932 -5.2687 43 1 -0.7349 -2.1012 -6.2094 44 1 -0.1247 -2.8404 -7.7527 45 1 -0.0018 0.0003 -7.2350 46 1 1.2130 -0.8542 -8.2807 47 1 0.0890 -0.8334 -4.6207 48 1 0.9545 0.6927 -4.9330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344810668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:27 Heat of formation + Delta-G solvation = -49.116898 kcal Electronic energy + Delta-G solvation = -23232.103296 eV Core-core repulsion = 20093.565223 eV Total energy + Delta-G solvation = -3138.538073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71937 -37.80974 -36.49937 -34.98386 -32.43321 -30.65129 -29.51450 -26.92238 -26.33673 -26.04808 -25.32109 -23.99742 -23.53269 -22.22760 -20.46547 -18.71290 -17.89092 -16.79330 -16.21923 -16.15634 -15.62412 -15.30410 -14.77130 -14.56559 -14.22573 -13.84078 -13.61929 -13.21030 -12.95423 -12.69997 -12.63316 -12.44499 -12.10037 -11.98320 -11.77906 -11.47384 -11.38241 -11.13170 -10.94526 -10.89823 -10.85435 -10.77292 -10.61587 -10.47970 -10.23928 -10.19400 -10.03379 -9.67883 -9.55169 -9.00221 -8.82892 -8.31405 -8.11307 -5.96126 -3.96323 3.34679 3.39291 3.41545 3.61308 4.14608 4.31972 4.38932 4.49305 4.52931 4.61219 4.89899 4.98165 5.02990 5.21348 5.29803 5.39554 5.43396 5.49068 5.49781 5.56119 5.63260 5.66916 5.68222 5.73701 5.81549 5.84820 5.95500 5.98920 6.08127 6.12556 6.23940 6.31518 6.35162 6.51564 6.66586 6.79336 6.83017 7.16407 7.20826 7.23409 7.26545 7.40498 7.66647 7.71006 7.85553 8.04084 8.48517 9.08857 9.66414 11.15543 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003227 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.409019 B = 8673.491212 C = 8845.155656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.289 1.289 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.681 5.681 15 C 0.087 3.913 16 H 0.041 0.959 17 C -0.143 4.143 18 C 0.062 3.938 19 O -0.369 6.369 20 C 0.096 3.904 21 C -0.164 4.164 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.126 4.126 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.339 0.661 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -0.117 -21.350 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.313 5.313 15 C -0.023 4.023 16 H 0.059 0.941 17 C -0.181 4.181 18 C -0.015 4.015 19 O -0.288 6.288 20 C 0.056 3.944 21 C -0.202 4.202 22 C -0.177 4.177 23 C -0.159 4.159 24 C -0.164 4.164 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.949 0.323 -21.370 21.461 hybrid contribution -0.797 -0.628 1.324 1.668 sum -2.746 -0.305 -20.046 20.235 Atomic orbital electron populations 1.21766 0.96119 1.00313 1.00408 1.20630 0.94702 0.96155 0.94401 1.21590 0.99738 0.95781 1.00146 1.19112 0.96071 0.94930 0.90186 1.21204 1.30832 1.11927 0.90629 0.92343 1.25018 0.95402 0.95111 0.99048 1.69958 1.37237 1.23201 1.23396 0.86722 0.79139 0.79844 0.82678 1.21441 1.20293 1.20361 1.22147 0.99777 0.94510 0.89339 1.60590 1.16157 1.53715 1.00835 1.21485 0.94671 0.96131 0.89973 0.94074 1.22167 0.96757 1.01967 0.97209 1.22577 0.92771 0.98895 0.87288 1.87918 1.17424 1.81729 1.41682 1.22637 0.83281 0.93390 0.95099 1.23542 0.98047 0.97105 1.01501 1.22717 0.96865 0.97302 1.00792 1.23001 0.97112 0.97910 0.97859 1.22034 0.98621 1.02465 0.93238 0.91712 0.94822 0.94157 0.94227 0.93885 0.92737 0.96737 0.96997 0.93109 0.91636 0.95982 0.84149 0.90387 0.90785 0.88939 0.93432 0.89483 0.91198 0.89867 0.90890 0.90721 0.89227 0.90831 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.24 8.06 37.15 0.30 -1.94 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.22 4.45 -3.83 -0.02 1.20 16 14 N -0.68 -9.73 5.52 -106.47 -0.59 -10.32 16 15 C 0.09 1.09 2.49 -67.47 -0.17 0.92 16 16 H 0.04 0.54 7.28 -51.93 -0.38 0.16 16 17 C -0.14 -1.73 5.59 -26.63 -0.15 -1.88 16 18 C 0.06 0.67 6.74 37.18 0.25 0.92 16 19 O -0.37 -4.42 10.53 -35.23 -0.37 -4.79 16 20 C 0.10 0.99 1.16 -90.28 -0.10 0.89 16 21 C -0.16 -1.52 6.90 -26.07 -0.18 -1.70 16 22 C -0.14 -1.09 7.73 -25.85 -0.20 -1.29 16 23 C -0.12 -1.05 7.50 -26.09 -0.20 -1.25 16 24 C -0.13 -1.35 4.45 -26.65 -0.12 -1.46 16 25 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 26 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 30 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 31 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.17 7.49 -51.93 -0.39 0.78 16 35 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.34 4.64 6.41 -39.29 -0.25 4.39 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 39 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.05 0.49 7.83 -51.93 -0.41 0.08 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.68 7.56 -51.93 -0.39 0.28 16 43 H 0.08 0.62 7.61 -51.93 -0.40 0.23 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.72 7.31 -51.93 -0.38 0.34 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -29.25 358.86 -9.60 -38.85 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.91 Total: 1.32 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -0.86 Total: -20.90 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.15 Total: -36.50 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.37 Total: -4.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.25 -9.60 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344810668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.269 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds