Wall clock time and date at job start Tue Mar 31 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53004 * 109.46828 * 119.99842 * 2 1 3 5 5 C 1.52994 * 109.47007 * 65.00669 * 4 2 1 6 6 N 1.46499 * 109.47032 * 179.97438 * 5 4 2 7 7 C 1.46503 * 119.99985 * 269.99627 * 6 5 4 8 8 C 1.50703 * 109.46812 * 269.99954 * 7 6 5 9 9 H 1.07990 * 120.00289 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00209 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00029 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46881 * 89.99727 * 12 10 8 14 14 H 1.48497 * 109.47221 * 209.99424 * 12 10 8 15 15 H 1.48500 * 109.47024 * 329.99748 * 12 10 8 16 16 C 1.34780 * 120.00240 * 90.00162 * 6 5 4 17 17 O 1.21280 * 119.99877 * 359.97438 * 16 6 5 18 18 C 1.50697 * 120.00236 * 180.02562 * 16 6 5 19 19 C 1.53778 * 113.61844 * 75.37912 * 18 16 6 20 20 C 1.53956 * 87.02150 * 89.23243 * 19 18 16 21 21 C 1.53004 * 113.53619 * 270.81304 * 20 19 18 22 22 C 1.52999 * 113.74725 * 139.94577 * 20 19 18 23 23 C 1.53781 * 113.61698 * 172.98943 * 18 16 6 24 24 H 1.09005 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47396 * 299.99646 * 1 2 3 26 26 H 1.08999 * 109.47140 * 60.00395 * 1 2 3 27 27 H 1.09003 * 109.47500 * 239.99964 * 2 1 3 28 28 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47163 * 300.00448 * 3 2 1 30 30 H 1.09003 * 109.46918 * 59.99607 * 3 2 1 31 31 H 1.08993 * 109.47203 * 304.99785 * 4 2 1 32 32 H 1.09002 * 109.46791 * 184.99795 * 4 2 1 33 33 H 1.09000 * 109.48161 * 59.99786 * 5 4 2 34 34 H 1.08999 * 109.47120 * 299.99302 * 5 4 2 35 35 H 1.08993 * 109.47200 * 30.00155 * 7 6 5 36 36 H 1.08998 * 109.47022 * 150.00446 * 7 6 5 37 37 H 0.96998 * 120.00118 * 179.97438 * 11 10 8 38 38 H 1.09006 * 112.85043 * 304.18441 * 18 16 6 39 39 H 1.09001 * 113.61417 * 203.74983 * 19 18 16 40 40 H 1.09001 * 113.61609 * 334.65460 * 19 18 16 41 41 H 1.09004 * 109.47116 * 149.38640 * 21 20 19 42 42 H 1.08995 * 109.47658 * 269.39039 * 21 20 19 43 43 H 1.09002 * 109.46922 * 29.39238 * 21 20 19 44 44 H 1.09000 * 109.46696 * 322.40239 * 22 20 19 45 45 H 1.08997 * 109.47260 * 82.40140 * 22 20 19 46 46 H 1.08998 * 109.47106 * 202.40549 * 22 20 19 47 47 H 1.08999 * 113.61332 * 25.34509 * 23 18 16 48 48 H 1.08996 * 113.61699 * 156.24460 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1240 -2.8861 2.3839 7 6 3.4523 -3.5041 2.3814 8 6 3.3415 -4.9313 1.9101 9 1 2.3780 -5.3374 1.6399 10 6 4.4701 -5.7187 1.8248 11 7 5.6434 -5.2242 2.1544 12 14 4.3328 -7.4875 1.2400 13 1 4.4909 -7.5345 -0.2359 14 1 5.3967 -8.3038 1.8779 15 1 3.0018 -8.0303 1.6128 16 6 1.3517 -2.9532 3.4864 17 8 0.2522 -2.4413 3.4886 18 6 1.8547 -3.6632 4.7167 19 6 2.9071 -2.8634 5.5027 20 6 1.7345 -2.2385 6.2803 21 6 1.1786 -0.9691 5.6317 22 6 2.0071 -2.0707 7.7764 23 6 0.9339 -3.5062 5.9384 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1262 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 4.1095 -2.9502 1.7112 36 1 3.8635 -3.4858 3.3907 37 1 6.4373 -5.7783 2.0948 38 1 2.1474 -4.6947 4.5203 39 1 3.5575 -3.4847 6.1184 40 1 3.4576 -2.1480 4.8918 41 1 0.1143 -0.8848 5.8518 42 1 1.7018 -0.0992 6.0287 43 1 1.3236 -1.0191 4.5526 44 1 2.5793 -2.9245 8.1394 45 1 2.5756 -1.1556 7.9418 46 1 1.0607 -2.0127 8.3140 47 1 -0.1062 -3.3091 5.6787 48 1 1.0438 -4.3036 6.6734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352575396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:12 Heat of formation + Delta-G solvation = -48.350541 kcal Electronic energy + Delta-G solvation = -23911.778908 eV Core-core repulsion = 20773.274067 eV Total energy + Delta-G solvation = -3138.504841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38702 -37.75575 -36.24137 -34.68647 -32.52180 -30.72859 -29.03625 -27.09222 -27.00686 -26.90394 -25.31706 -24.14064 -23.05183 -21.65542 -19.73651 -18.62564 -17.41659 -16.69208 -16.02357 -15.43898 -15.03530 -14.94037 -14.49369 -14.16965 -13.79932 -13.74832 -13.30066 -13.15725 -12.86554 -12.38508 -12.35408 -12.20263 -12.06778 -12.01571 -11.64680 -11.48833 -11.34785 -11.18284 -11.00704 -10.96565 -10.77628 -10.70035 -10.57844 -10.49392 -10.33651 -10.21904 -9.96884 -9.73812 -9.61352 -9.51018 -8.88890 -8.52422 -7.63197 -6.16676 -4.23654 3.22654 3.29963 3.33041 3.47432 3.96989 4.34639 4.82504 4.99073 5.03096 5.11499 5.15798 5.16735 5.19580 5.33178 5.52098 5.60084 5.73200 5.74737 5.85729 5.88860 5.92322 5.96349 6.01489 6.04005 6.08034 6.12379 6.13948 6.17372 6.26137 6.29474 6.35042 6.37200 6.40247 6.43479 6.55167 6.64351 6.65244 6.72955 6.79988 6.83312 6.92579 7.24866 7.61810 7.78633 8.09402 8.41527 8.82530 9.11117 9.44111 10.89793 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.007555 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.498093 B = 3705.353332 C = 5812.682017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.235 3.765 8 C -0.536 4.536 9 H 0.059 0.941 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.538 3.462 17 O -0.570 6.570 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.116 4.116 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 8.419 3.194 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.005 4.005 6 N -0.323 5.323 7 C 0.115 3.885 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.327 3.673 17 O -0.452 6.452 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.091 4.091 21 C -0.184 4.184 22 C -0.189 4.189 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.746 8.627 3.189 10.845 hybrid contribution 0.301 -1.204 -0.444 1.318 sum -5.445 7.423 2.745 9.607 Atomic orbital electron populations 1.21866 0.95372 1.02037 1.01071 1.21052 0.95817 0.95880 0.98560 1.21818 1.00890 0.96232 1.01234 1.21987 1.00966 0.96044 0.97517 1.21342 0.99766 0.90966 0.88397 1.48189 1.19344 1.53168 1.11584 1.19485 0.77612 0.92559 0.98855 1.21513 0.94043 0.96624 1.45323 0.92240 1.24928 0.95117 0.98626 0.95096 1.69924 0.98435 1.36811 1.47776 0.86551 0.77916 0.84396 0.78956 1.20555 1.21065 1.19804 1.19838 0.84293 0.78952 0.84245 1.90566 1.21503 1.49087 1.84073 1.22233 0.98233 1.01727 0.92712 1.23013 0.95375 0.98711 0.97710 1.21898 0.97037 0.95381 0.94768 1.21718 1.00099 0.94689 1.01847 1.21719 1.00872 1.01279 0.95044 1.22926 0.99427 0.96902 0.96096 0.92283 0.92798 0.93364 0.91240 0.92794 0.93100 0.92938 0.92042 0.91942 0.90813 0.90919 0.94971 0.93662 0.92592 0.87424 0.89603 0.91216 0.92706 0.93819 0.91104 0.92723 0.93024 0.92974 0.90441 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.33 16 4 C -0.13 -2.02 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.20 5.16 -4.05 -0.02 2.18 16 6 N -0.59 -12.45 2.46 -175.07 -0.43 -12.88 16 7 C 0.23 5.54 4.95 -5.19 -0.03 5.52 16 8 C -0.54 -13.95 9.30 -34.44 -0.32 -14.27 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 12 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.54 11.12 5.46 -10.99 -0.06 11.06 16 17 O -0.57 -12.39 13.43 5.56 0.07 -12.31 16 18 C -0.13 -2.40 3.09 -90.96 -0.28 -2.68 16 19 C -0.11 -1.86 5.69 -25.83 -0.15 -2.00 16 20 C -0.09 -1.38 1.39 -153.60 -0.21 -1.59 16 21 C -0.13 -2.00 8.25 37.16 0.31 -1.69 16 22 C -0.13 -1.64 9.18 37.16 0.34 -1.30 16 23 C -0.12 -1.87 6.74 -25.92 -0.17 -2.04 16 24 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 1.37 5.85 -51.93 -0.30 1.06 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 36 H 0.05 1.09 5.27 -51.93 -0.27 0.82 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.11 2.19 8.00 -51.93 -0.42 1.78 16 39 H 0.09 1.36 7.98 -51.93 -0.41 0.94 16 40 H 0.07 1.25 7.43 -51.93 -0.39 0.86 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 43 H 0.07 1.29 4.88 -51.93 -0.25 1.03 16 44 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16 45 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 48 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -27.43 369.91 -8.53 -35.96 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -9.05 Total: 3.53 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.42 Total: -11.74 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.31 Total: -36.58 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.43 -8.53 -35.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352575396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.394 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds