Wall clock time and date at job start Tue Mar 31 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53004 * 109.46828 * 119.99842 * 2 1 3 5 5 C 1.52994 * 109.47007 * 65.00669 * 4 2 1 6 6 N 1.46499 * 109.47032 * 179.97438 * 5 4 2 7 7 C 1.46503 * 119.99985 * 269.99627 * 6 5 4 8 8 C 1.50703 * 109.46812 * 269.99954 * 7 6 5 9 9 H 1.07990 * 120.00289 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00209 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00029 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46881 * 89.99727 * 12 10 8 14 14 H 1.48497 * 109.47221 * 209.99424 * 12 10 8 15 15 H 1.48500 * 109.47024 * 329.99748 * 12 10 8 16 16 C 1.34780 * 120.00240 * 90.00162 * 6 5 4 17 17 O 1.21280 * 119.99877 * 359.97438 * 16 6 5 18 18 C 1.50697 * 120.00236 * 180.02562 * 16 6 5 19 19 C 1.53778 * 113.61844 * 75.37912 * 18 16 6 20 20 C 1.53956 * 87.02150 * 89.23243 * 19 18 16 21 21 C 1.53004 * 113.53619 * 270.81304 * 20 19 18 22 22 C 1.52999 * 113.74725 * 139.94577 * 20 19 18 23 23 C 1.53781 * 113.61698 * 172.98943 * 18 16 6 24 24 H 1.09005 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47396 * 299.99646 * 1 2 3 26 26 H 1.08999 * 109.47140 * 60.00395 * 1 2 3 27 27 H 1.09003 * 109.47500 * 239.99964 * 2 1 3 28 28 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47163 * 300.00448 * 3 2 1 30 30 H 1.09003 * 109.46918 * 59.99607 * 3 2 1 31 31 H 1.08993 * 109.47203 * 304.99785 * 4 2 1 32 32 H 1.09002 * 109.46791 * 184.99795 * 4 2 1 33 33 H 1.09000 * 109.48161 * 59.99786 * 5 4 2 34 34 H 1.08999 * 109.47120 * 299.99302 * 5 4 2 35 35 H 1.08993 * 109.47200 * 30.00155 * 7 6 5 36 36 H 1.08998 * 109.47022 * 150.00446 * 7 6 5 37 37 H 0.96998 * 120.00118 * 179.97438 * 11 10 8 38 38 H 1.09006 * 112.85043 * 304.18441 * 18 16 6 39 39 H 1.09001 * 113.61417 * 203.74983 * 19 18 16 40 40 H 1.09001 * 113.61609 * 334.65460 * 19 18 16 41 41 H 1.09004 * 109.47116 * 149.38640 * 21 20 19 42 42 H 1.08995 * 109.47658 * 269.39039 * 21 20 19 43 43 H 1.09002 * 109.46922 * 29.39238 * 21 20 19 44 44 H 1.09000 * 109.46696 * 322.40239 * 22 20 19 45 45 H 1.08997 * 109.47260 * 82.40140 * 22 20 19 46 46 H 1.08998 * 109.47106 * 202.40549 * 22 20 19 47 47 H 1.08999 * 113.61332 * 25.34509 * 23 18 16 48 48 H 1.08996 * 113.61699 * 156.24460 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1240 -2.8861 2.3839 7 6 3.4523 -3.5041 2.3814 8 6 3.3415 -4.9313 1.9101 9 1 2.3780 -5.3374 1.6399 10 6 4.4701 -5.7187 1.8248 11 7 5.6434 -5.2242 2.1544 12 14 4.3328 -7.4875 1.2400 13 1 4.4909 -7.5345 -0.2359 14 1 5.3967 -8.3038 1.8779 15 1 3.0018 -8.0303 1.6128 16 6 1.3517 -2.9532 3.4864 17 8 0.2522 -2.4413 3.4886 18 6 1.8547 -3.6632 4.7167 19 6 2.9071 -2.8634 5.5027 20 6 1.7345 -2.2385 6.2803 21 6 1.1786 -0.9691 5.6317 22 6 2.0071 -2.0707 7.7764 23 6 0.9339 -3.5062 5.9384 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1262 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 4.1095 -2.9502 1.7112 36 1 3.8635 -3.4858 3.3907 37 1 6.4373 -5.7783 2.0948 38 1 2.1474 -4.6947 4.5203 39 1 3.5575 -3.4847 6.1184 40 1 3.4576 -2.1480 4.8918 41 1 0.1143 -0.8848 5.8518 42 1 1.7018 -0.0992 6.0287 43 1 1.3236 -1.0191 4.5526 44 1 2.5793 -2.9245 8.1394 45 1 2.5756 -1.1556 7.9418 46 1 1.0607 -2.0127 8.3140 47 1 -0.1062 -3.3091 5.6787 48 1 1.0438 -4.3036 6.6734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352575396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:12 Heat of formation + Delta-G solvation = -60.135663 kcal Electronic energy + Delta-G solvation = -23912.289950 eV Core-core repulsion = 20773.274067 eV Total energy + Delta-G solvation = -3139.015882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88654 -39.20469 -37.58291 -36.37321 -34.47080 -32.02710 -30.50201 -28.77720 -28.24434 -28.01727 -26.66332 -25.55051 -24.95067 -23.09873 -20.90600 -20.09993 -18.95852 -18.61534 -17.69265 -17.10570 -16.54410 -16.29761 -16.14046 -15.55406 -15.07050 -14.97163 -14.61903 -14.52916 -14.21512 -14.10690 -13.80412 -13.49598 -13.38717 -13.35455 -13.10310 -12.83182 -12.76422 -12.69409 -12.57059 -12.45264 -12.22847 -12.11259 -11.94017 -11.91489 -11.62777 -11.56823 -11.53106 -11.42066 -10.97543 -10.85095 -10.68369 -10.43018 -9.38852 -8.20162 -6.34830 1.39382 1.41474 1.50873 1.81340 2.31195 2.45519 3.09241 3.55616 3.66106 3.68183 3.90027 3.94615 3.96620 4.07271 4.17142 4.38683 4.39668 4.56209 4.67446 4.68956 4.76343 4.78751 4.81070 4.83693 4.89381 4.91306 4.94711 4.96945 5.01033 5.01731 5.04855 5.11396 5.14151 5.21532 5.24491 5.26596 5.30401 5.33023 5.46185 5.49249 5.52933 5.63466 5.67964 5.90846 6.07598 6.59779 6.83833 7.32802 7.46081 8.84969 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.007555 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.498093 B = 3705.353332 C = 5812.682017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.117 3.883 6 N -0.599 5.599 7 C 0.253 3.747 8 C -0.548 4.548 9 H 0.047 0.953 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.954 3.046 13 H -0.275 1.275 14 H -0.278 1.278 15 H -0.273 1.273 16 C 0.535 3.465 17 O -0.583 6.583 18 C -0.142 4.142 19 C -0.107 4.107 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.107 4.107 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.014 0.986 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 8.676 3.823 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.006 4.006 6 N -0.329 5.329 7 C 0.132 3.868 8 C -0.586 4.586 9 H 0.066 0.934 10 C -0.177 4.177 11 N -0.556 5.556 12 Si 0.779 3.221 13 H -0.200 1.200 14 H -0.203 1.203 15 H -0.198 1.198 16 C 0.325 3.675 17 O -0.465 6.465 18 C -0.163 4.163 19 C -0.145 4.145 20 C -0.082 4.082 21 C -0.181 4.181 22 C -0.184 4.184 23 C -0.144 4.144 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.026 8.896 3.814 11.401 hybrid contribution 0.363 -1.271 -0.675 1.484 sum -5.663 7.625 3.139 10.003 Atomic orbital electron populations 1.21829 0.94778 1.01443 1.01926 1.21057 0.96283 0.96813 0.96926 1.21781 1.00884 0.94868 1.02228 1.21860 1.00256 0.94411 0.98717 1.21456 0.99388 0.92398 0.87354 1.48206 1.18621 1.53435 1.12602 1.19102 0.78505 0.91477 0.97742 1.21671 0.93633 0.97786 1.45541 0.93428 1.25610 0.94754 1.02219 0.95079 1.70007 0.98990 1.38199 1.48428 0.85618 0.77876 0.79977 0.78596 1.20050 1.20312 1.19775 1.20166 0.84019 0.78713 0.84608 1.90544 1.21929 1.49742 1.84329 1.22311 1.00413 1.00483 0.93083 1.23023 0.95537 0.98346 0.97565 1.21842 0.95291 0.94442 0.96597 1.21666 1.00417 0.95919 1.00083 1.21682 1.01952 1.02268 0.92464 1.22949 0.98163 0.98281 0.95033 0.93599 0.93313 0.91100 0.90902 0.92819 0.91130 0.92914 0.93138 0.92854 0.91438 0.91240 0.96816 0.94284 0.92301 0.89451 0.88378 0.92883 0.92709 0.92038 0.94007 0.91737 0.92041 0.91623 0.91661 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.95 71.98 0.64 -2.87 16 2 C -0.09 -2.38 2.92 -10.79 -0.03 -2.41 16 3 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 4 C -0.11 -3.73 5.01 30.59 0.15 -3.58 16 5 C 0.12 4.49 5.16 86.38 0.45 4.94 16 6 N -0.60 -26.11 2.46 -826.17 -2.03 -28.14 16 7 C 0.25 12.35 4.95 85.63 0.42 12.78 16 8 C -0.55 -29.11 9.30 25.60 0.24 -28.87 16 9 H 0.05 2.60 7.81 -2.92 -0.02 2.57 16 10 C 0.02 1.27 5.46 84.65 0.46 1.73 16 11 N -0.92 -50.60 13.29 21.45 0.28 -50.32 16 12 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 C 0.54 22.76 5.46 87.66 0.48 23.24 16 17 O -0.58 -25.89 13.43 -3.03 -0.04 -25.93 16 18 C -0.14 -5.39 3.09 -11.02 -0.03 -5.43 16 19 C -0.11 -3.57 5.69 31.18 0.18 -3.40 16 20 C -0.08 -2.36 1.39 -51.59 -0.07 -2.43 16 21 C -0.12 -3.81 8.25 71.98 0.59 -3.21 16 22 C -0.13 -2.78 9.18 71.98 0.66 -2.12 16 23 C -0.11 -3.33 6.74 31.12 0.21 -3.12 16 24 H 0.04 1.24 6.56 -2.38 -0.02 1.22 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 34 H 0.07 2.70 5.85 -2.39 -0.01 2.69 16 35 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 36 H 0.04 1.95 5.27 -2.39 -0.01 1.94 16 37 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.09 3.66 8.00 -2.38 -0.02 3.64 16 39 H 0.10 3.01 7.98 -2.39 -0.02 2.99 16 40 H 0.05 1.93 7.43 -2.39 -0.02 1.91 16 41 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 43 H 0.04 1.53 4.88 -2.39 -0.01 1.52 16 44 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 45 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 2.21 7.32 -2.39 -0.02 2.19 16 48 H 0.10 2.72 8.10 -2.39 -0.02 2.70 16 Total: -1.00 -58.70 369.91 6.14 -52.55 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.89 Total: 24.78 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.01 Total: -17.15 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.74 Total: -78.45 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -58.70 6.14 -52.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352575396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.583 kcal (2) G-P(sol) polarization free energy of solvation -58.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds