Wall clock time and date at job start Tue Mar 31 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 N 1.46902 * 109.47321 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99945 * 189.99758 * 4 3 2 6 6 C 1.53000 * 109.46891 * 72.81184 * 5 4 3 7 7 C 1.50706 * 109.46657 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00208 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99550 * 179.72295 * 7 6 5 10 10 N 1.31519 * 120.00411 * 0.27736 * 9 7 6 11 11 Si 1.86806 * 119.99891 * 180.27406 * 9 7 6 12 12 H 1.48495 * 109.46894 * 90.00255 * 11 9 7 13 13 H 1.48495 * 109.47356 * 210.00075 * 11 9 7 14 14 H 1.48495 * 109.46913 * 330.00277 * 11 9 7 15 15 C 1.46900 * 110.99975 * 66.04392 * 4 3 2 16 16 H 1.09003 * 113.52715 * 38.69726 * 15 4 3 17 17 C 1.50330 * 114.55618 * 264.48445 * 15 4 3 18 18 H 1.09001 * 114.28552 * 317.95710 * 17 15 4 19 19 C 1.52022 * 127.12070 * 113.57545 * 17 15 4 20 20 C 1.55777 * 101.82594 * 119.01946 * 19 17 15 21 21 O 1.46087 * 105.44716 * 353.11038 * 20 19 17 22 22 C 1.40077 * 103.53728 * 329.96256 * 21 20 19 23 23 H 1.09004 * 110.77239 * 293.94031 * 22 21 20 24 24 C 1.49282 * 133.93921 * 138.67622 * 22 21 20 25 25 C 1.52999 * 114.55234 * 111.77220 * 24 22 21 26 26 C 1.53001 * 114.59826 * 337.99302 * 24 22 21 27 27 H 1.09002 * 109.47258 * 299.99980 * 1 2 3 28 28 H 1.08993 * 109.46984 * 60.00090 * 1 2 3 29 29 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47149 * 239.99499 * 2 1 3 31 31 H 1.09006 * 109.46736 * 119.99356 * 2 1 3 32 32 H 1.09002 * 109.46987 * 59.99854 * 3 2 1 33 33 H 1.08999 * 109.46704 * 300.00040 * 3 2 1 34 34 H 1.09002 * 109.47160 * 312.81400 * 5 4 3 35 35 H 1.09000 * 109.47081 * 192.81053 * 5 4 3 36 36 H 1.08998 * 109.47527 * 60.00119 * 6 5 4 37 37 H 1.09006 * 109.47453 * 299.99515 * 6 5 4 38 38 H 0.96997 * 119.99900 * 179.97438 * 10 9 7 39 39 H 1.08995 * 111.48153 * 0.75585 * 19 17 15 40 40 H 1.09001 * 110.73685 * 236.94898 * 19 17 15 41 41 H 1.09004 * 110.24960 * 234.12173 * 20 19 17 42 42 H 1.08997 * 110.25777 * 112.10435 * 20 19 17 43 43 H 1.09007 * 109.46836 * 145.65888 * 25 24 22 44 44 H 1.09002 * 109.47371 * 265.65648 * 25 24 22 45 45 H 1.09000 * 109.47179 * 25.65914 * 25 24 22 46 46 H 1.09000 * 109.46947 * 346.68012 * 26 24 22 47 47 H 1.08998 * 109.46742 * 106.67212 * 26 24 22 48 48 H 1.08999 * 109.47194 * 226.67503 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0354 2.7932 0.2387 6 6 3.8195 3.1734 1.7049 7 6 4.3601 4.5588 1.9493 8 1 4.8119 5.1128 1.1398 9 6 4.2721 5.1215 3.2049 10 7 3.7214 4.4471 4.1907 11 14 4.9352 6.8417 3.5061 12 1 3.8614 7.8367 3.2568 13 1 5.3978 6.9547 4.9126 14 1 6.0733 7.1012 2.5883 15 6 4.0361 0.8855 -1.2524 16 1 3.4642 1.1779 -2.1330 17 6 4.3826 -0.5759 -1.1894 18 1 4.8909 -0.8771 -0.2733 19 6 3.7020 -1.7132 -1.9340 20 6 4.8723 -2.2775 -2.7935 21 8 5.9833 -1.3500 -2.5950 22 6 5.3487 -0.1229 -2.3636 23 1 4.8184 0.2123 -3.2550 24 6 5.5886 1.0048 -1.4153 25 6 6.0608 2.3015 -2.0760 26 6 6.3897 0.6281 -0.1674 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.5138 3.5045 -0.4017 35 1 5.1012 2.8131 0.0113 36 1 4.3411 2.4622 2.3454 37 1 2.7537 3.1536 1.9324 38 1 3.6599 4.8429 5.0741 39 1 2.8950 -1.3479 -2.5690 40 1 3.3345 -2.4659 -1.2365 41 1 4.5881 -2.3062 -3.8454 42 1 5.1470 -3.2744 -2.4488 43 1 5.6521 3.1548 -1.5346 44 1 7.1497 2.3449 -2.0540 45 1 5.7169 2.3286 -3.1099 46 1 6.4418 -0.4574 -0.0831 47 1 7.3978 1.0351 -0.2464 48 1 5.9004 1.0382 0.7160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354204718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:13 Heat of formation + Delta-G solvation = 33.962402 kcal Electronic energy + Delta-G solvation = -24159.063888 eV Core-core repulsion = 21024.128405 eV Total energy + Delta-G solvation = -3134.935484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.10453 -37.71643 -35.56958 -33.58361 -32.26285 -31.77384 -29.67511 -28.46742 -27.46700 -25.75725 -24.55141 -23.43417 -22.40689 -20.95639 -20.10629 -19.59308 -18.92917 -16.65227 -16.07629 -15.76352 -15.40809 -14.98834 -14.63151 -14.40892 -14.20971 -13.86423 -13.58575 -13.47309 -12.90912 -12.63800 -12.46588 -12.24874 -11.96679 -11.83764 -11.65204 -11.58584 -11.44726 -11.19218 -11.07566 -11.01257 -10.91876 -10.72070 -10.49057 -10.43285 -10.36557 -10.00783 -9.78674 -9.60172 -9.33177 -9.06758 -8.82335 -8.30382 -7.69307 -5.97604 -3.99799 3.13756 3.32682 3.39342 3.42225 4.30848 4.37520 4.47985 4.54602 4.73046 4.88633 4.94646 5.11129 5.27101 5.29973 5.35743 5.38502 5.41563 5.50685 5.56268 5.60038 5.63426 5.75017 5.78977 5.83152 5.95062 6.01813 6.06468 6.08248 6.11481 6.17497 6.19145 6.26177 6.32750 6.44957 6.46996 6.53935 6.59363 6.63400 6.71173 6.95600 7.06071 7.54465 7.63237 7.83268 7.95118 8.12165 8.46123 9.07834 9.63858 11.13613 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.005072 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.794660 B = 5519.701977 C = 6590.930790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.519 5.519 5 C 0.052 3.948 6 C 0.031 3.969 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.889 3.111 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.083 3.917 16 H 0.070 0.930 17 C -0.156 4.156 18 H 0.127 0.873 19 C -0.141 4.141 20 C 0.047 3.953 21 O -0.357 6.357 22 C 0.016 3.984 23 H 0.077 0.923 24 C -0.034 4.034 25 C -0.150 4.150 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.023 0.977 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -11.804 -13.236 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.243 5.243 5 C -0.074 4.074 6 C -0.006 4.006 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.717 3.283 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.026 4.026 16 H 0.087 0.913 17 C -0.175 4.175 18 H 0.145 0.855 19 C -0.179 4.179 20 C -0.029 4.029 21 O -0.275 6.275 22 C -0.043 4.043 23 H 0.095 0.905 24 C -0.034 4.034 25 C -0.207 4.207 26 C -0.187 4.187 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.834 -12.145 -12.682 17.579 hybrid contribution -0.286 1.480 -0.567 1.611 sum -1.120 -10.665 -13.249 17.044 Atomic orbital electron populations 1.21743 0.96450 1.00998 1.01637 1.21589 0.94577 0.97272 1.02489 1.22172 0.87820 0.96254 1.00921 1.62277 1.06910 1.24617 1.30481 1.22599 0.99176 0.85058 1.00544 1.19062 0.97084 0.95611 0.88887 1.21189 1.38890 1.00734 0.95096 0.92915 1.24971 0.95415 0.97541 0.96254 1.69973 1.44541 1.37266 1.01412 0.86646 0.79249 0.84974 0.77435 1.20787 1.21240 1.19893 1.23024 0.93479 0.93806 0.92332 0.91295 1.24561 0.99835 0.93155 0.99913 0.85512 1.22422 0.97435 0.99016 0.99040 1.24138 0.85994 0.93884 0.98891 1.88471 1.28898 1.17603 1.92540 1.24011 0.95284 0.89866 0.95159 0.90527 1.21821 0.94763 0.92177 0.94656 1.22073 1.01602 0.97123 0.99912 1.21790 0.98811 1.01392 0.96754 0.92587 0.93344 0.93156 0.92067 0.91379 0.89859 0.95999 0.96479 0.90607 0.95823 0.96748 0.93065 0.91122 0.90662 0.92273 0.89584 0.90545 0.92177 0.92921 0.91887 0.92684 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.64 5.61 -26.73 -0.15 -1.79 16 3 C 0.06 0.91 4.78 -3.82 -0.02 0.90 16 4 N -0.52 -8.90 3.93 -242.71 -0.96 -9.85 16 5 C 0.05 1.06 3.49 -3.82 -0.01 1.04 16 6 C 0.03 0.79 5.04 -27.88 -0.14 0.64 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 11 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.08 1.19 2.19 -80.58 -0.18 1.01 16 16 H 0.07 0.97 7.46 -51.93 -0.39 0.59 16 17 C -0.16 -2.04 3.07 -101.38 -0.31 -2.35 16 18 H 0.13 1.85 5.44 -51.93 -0.28 1.57 16 19 C -0.14 -1.50 5.48 -25.75 -0.14 -1.64 16 20 C 0.05 0.49 7.76 38.64 0.30 0.79 16 21 O -0.36 -4.95 11.45 -33.12 -0.38 -5.32 16 22 C 0.02 0.21 3.96 -38.89 -0.15 0.06 16 23 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 24 C -0.03 -0.48 0.79 -166.48 -0.13 -0.61 16 25 C -0.15 -2.05 9.04 37.16 0.34 -1.71 16 26 C -0.13 -1.96 8.08 37.16 0.30 -1.66 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.76 4.82 -51.93 -0.25 0.51 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.56 6.45 -51.93 -0.33 1.22 16 33 H 0.02 0.35 8.03 -51.93 -0.42 -0.07 16 34 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 35 H 0.08 1.49 3.80 -51.93 -0.20 1.29 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.01 0.39 6.64 -51.93 -0.34 0.04 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.15 5.70 -51.93 -0.30 0.85 16 44 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 45 H 0.05 0.64 7.87 -51.93 -0.41 0.23 16 46 H 0.06 0.91 6.24 -51.93 -0.32 0.58 16 47 H 0.05 0.78 7.76 -51.93 -0.40 0.38 16 48 H 0.09 1.52 6.42 -51.93 -0.33 1.19 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -29.30 352.14 -9.17 -38.46 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.51 Total: 0.73 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.34 Total: -19.90 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.22 Total: -35.77 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.38 Total: -5.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.30 -9.17 -38.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354204718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.427 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds