Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 N 1.46902 * 109.47321 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99945 * 189.99758 * 4 3 2 6 6 C 1.53000 * 109.46891 * 72.81184 * 5 4 3 7 7 C 1.50706 * 109.46657 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00208 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99550 * 179.72295 * 7 6 5 10 10 N 1.31519 * 120.00411 * 0.27736 * 9 7 6 11 11 Si 1.86806 * 119.99891 * 180.27406 * 9 7 6 12 12 H 1.48495 * 109.46894 * 90.00255 * 11 9 7 13 13 H 1.48495 * 109.47356 * 210.00075 * 11 9 7 14 14 H 1.48495 * 109.46913 * 330.00277 * 11 9 7 15 15 C 1.46900 * 110.99975 * 66.04392 * 4 3 2 16 16 H 1.09003 * 113.52715 * 38.69726 * 15 4 3 17 17 C 1.50330 * 114.55618 * 264.48445 * 15 4 3 18 18 H 1.09001 * 114.28552 * 317.95710 * 17 15 4 19 19 C 1.52022 * 127.12070 * 113.57545 * 17 15 4 20 20 C 1.55777 * 101.82594 * 119.01946 * 19 17 15 21 21 O 1.46087 * 105.44716 * 353.11038 * 20 19 17 22 22 C 1.40077 * 103.53728 * 329.96256 * 21 20 19 23 23 H 1.09004 * 110.77239 * 293.94031 * 22 21 20 24 24 C 1.49282 * 133.93921 * 138.67622 * 22 21 20 25 25 C 1.52999 * 114.55234 * 111.77220 * 24 22 21 26 26 C 1.53001 * 114.59826 * 337.99302 * 24 22 21 27 27 H 1.09002 * 109.47258 * 299.99980 * 1 2 3 28 28 H 1.08993 * 109.46984 * 60.00090 * 1 2 3 29 29 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47149 * 239.99499 * 2 1 3 31 31 H 1.09006 * 109.46736 * 119.99356 * 2 1 3 32 32 H 1.09002 * 109.46987 * 59.99854 * 3 2 1 33 33 H 1.08999 * 109.46704 * 300.00040 * 3 2 1 34 34 H 1.09002 * 109.47160 * 312.81400 * 5 4 3 35 35 H 1.09000 * 109.47081 * 192.81053 * 5 4 3 36 36 H 1.08998 * 109.47527 * 60.00119 * 6 5 4 37 37 H 1.09006 * 109.47453 * 299.99515 * 6 5 4 38 38 H 0.96997 * 119.99900 * 179.97438 * 10 9 7 39 39 H 1.08995 * 111.48153 * 0.75585 * 19 17 15 40 40 H 1.09001 * 110.73685 * 236.94898 * 19 17 15 41 41 H 1.09004 * 110.24960 * 234.12173 * 20 19 17 42 42 H 1.08997 * 110.25777 * 112.10435 * 20 19 17 43 43 H 1.09007 * 109.46836 * 145.65888 * 25 24 22 44 44 H 1.09002 * 109.47371 * 265.65648 * 25 24 22 45 45 H 1.09000 * 109.47179 * 25.65914 * 25 24 22 46 46 H 1.09000 * 109.46947 * 346.68012 * 26 24 22 47 47 H 1.08998 * 109.46742 * 106.67212 * 26 24 22 48 48 H 1.08999 * 109.47194 * 226.67503 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0354 2.7932 0.2387 6 6 3.8195 3.1734 1.7049 7 6 4.3601 4.5588 1.9493 8 1 4.8119 5.1128 1.1398 9 6 4.2721 5.1215 3.2049 10 7 3.7214 4.4471 4.1907 11 14 4.9352 6.8417 3.5061 12 1 3.8614 7.8367 3.2568 13 1 5.3978 6.9547 4.9126 14 1 6.0733 7.1012 2.5883 15 6 4.0361 0.8855 -1.2524 16 1 3.4642 1.1779 -2.1330 17 6 4.3826 -0.5759 -1.1894 18 1 4.8909 -0.8771 -0.2733 19 6 3.7020 -1.7132 -1.9340 20 6 4.8723 -2.2775 -2.7935 21 8 5.9833 -1.3500 -2.5950 22 6 5.3487 -0.1229 -2.3636 23 1 4.8184 0.2123 -3.2550 24 6 5.5886 1.0048 -1.4153 25 6 6.0608 2.3015 -2.0760 26 6 6.3897 0.6281 -0.1674 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.5138 3.5045 -0.4017 35 1 5.1012 2.8131 0.0113 36 1 4.3411 2.4622 2.3454 37 1 2.7537 3.1536 1.9324 38 1 3.6599 4.8429 5.0741 39 1 2.8950 -1.3479 -2.5690 40 1 3.3345 -2.4659 -1.2365 41 1 4.5881 -2.3062 -3.8454 42 1 5.1470 -3.2744 -2.4488 43 1 5.6521 3.1548 -1.5346 44 1 7.1497 2.3449 -2.0540 45 1 5.7169 2.3286 -3.1099 46 1 6.4418 -0.4574 -0.0831 47 1 7.3978 1.0351 -0.2464 48 1 5.9004 1.0382 0.7160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354204718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = 16.882313 kcal Electronic energy + Delta-G solvation = -24159.804537 eV Core-core repulsion = 21024.128405 eV Total energy + Delta-G solvation = -3135.676132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.18085 -38.93301 -36.77857 -35.39955 -33.86922 -32.77448 -31.23312 -29.74443 -28.65679 -27.12441 -26.18415 -24.45259 -23.75470 -22.30968 -21.53306 -20.74878 -20.05788 -18.53126 -17.46001 -16.86467 -16.57912 -16.33657 -16.15401 -15.73976 -15.32949 -15.22780 -14.81111 -14.64987 -14.25552 -14.07857 -13.88595 -13.52813 -13.40199 -13.08485 -13.05733 -12.87487 -12.68786 -12.54843 -12.47855 -12.38750 -12.17862 -12.09083 -12.01080 -11.66551 -11.54003 -11.45158 -11.29556 -11.09675 -10.86570 -10.73327 -10.49788 -9.89912 -9.09546 -8.17283 -6.27973 1.40460 1.41606 1.52615 2.14216 2.41594 3.12641 3.16286 3.19829 3.44010 3.70161 3.95584 4.03365 4.09044 4.17021 4.22226 4.30330 4.41302 4.43333 4.51903 4.55422 4.59293 4.61650 4.72097 4.74440 4.81711 4.87174 4.90780 4.91171 4.98637 5.03411 5.05623 5.10121 5.14943 5.21300 5.25597 5.35104 5.38592 5.42177 5.45005 5.47516 5.54416 5.73568 5.84691 5.98071 6.16672 6.39398 6.44998 6.89950 7.40991 8.94714 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.005072 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.794660 B = 5519.701977 C = 6590.930790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.057 3.943 4 N -0.528 5.528 5 C 0.073 3.927 6 C 0.041 3.959 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.082 3.918 16 H 0.084 0.916 17 C -0.154 4.154 18 H 0.108 0.892 19 C -0.135 4.135 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.025 3.975 23 H 0.092 0.908 24 C -0.042 4.042 25 C -0.148 4.148 26 C -0.125 4.125 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.013 0.987 35 H 0.082 0.918 36 H -0.010 1.010 37 H -0.013 1.013 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -12.337 -15.581 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.071 4.071 4 N -0.252 5.252 5 C -0.054 4.054 6 C 0.004 3.996 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.027 4.027 16 H 0.101 0.899 17 C -0.173 4.173 18 H 0.125 0.875 19 C -0.173 4.173 20 C -0.030 4.030 21 O -0.299 6.299 22 C -0.034 4.034 23 H 0.110 0.890 24 C -0.043 4.043 25 C -0.205 4.205 26 C -0.182 4.182 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.008 0.992 37 H 0.005 0.995 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.844 -12.693 -15.046 19.702 hybrid contribution -0.278 1.580 0.178 1.614 sum -1.122 -11.113 -14.867 18.595 Atomic orbital electron populations 1.21721 0.94868 1.02323 1.01550 1.21509 0.95855 0.94971 1.02569 1.22171 0.87297 0.98098 0.99565 1.62179 1.07546 1.22550 1.32941 1.22193 0.99671 0.86848 0.96678 1.18871 0.94568 0.94270 0.91907 1.21616 1.38864 1.01765 0.95540 0.92297 1.25909 0.95564 1.02012 0.95971 1.70117 1.45791 1.39360 1.01932 0.85508 0.78946 0.79501 0.77470 1.19887 1.20865 1.18644 1.23118 0.93605 0.94793 0.91158 0.89896 1.24378 1.00249 0.93148 0.99526 0.87459 1.22430 0.97795 0.98008 0.99053 1.24331 0.84866 0.93701 1.00073 1.88452 1.30684 1.18067 1.92682 1.23890 0.94787 0.89447 0.95294 0.89018 1.21841 0.94405 0.93303 0.94709 1.22043 1.01903 0.95964 1.00599 1.21695 0.98870 1.01443 0.96182 0.93858 0.92301 0.91089 0.90254 0.92881 0.93377 0.95134 0.96902 0.90029 0.99171 0.99492 0.92909 0.89690 0.89784 0.90280 0.88235 0.92379 0.91684 0.91077 0.91549 0.92307 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.11 -2.91 5.61 30.60 0.17 -2.74 16 3 C 0.06 1.87 4.78 86.30 0.41 2.28 16 4 N -0.53 -18.51 3.93 -921.81 -3.63 -22.14 16 5 C 0.07 3.05 3.49 86.30 0.30 3.36 16 6 C 0.04 2.22 5.04 29.85 0.15 2.37 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.00 0.19 5.46 84.65 0.46 0.65 16 10 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 11 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.08 2.26 2.19 36.58 0.08 2.34 16 16 H 0.08 2.12 7.46 -2.39 -0.02 2.10 16 17 C -0.15 -3.78 3.07 -17.76 -0.05 -3.83 16 18 H 0.11 3.10 5.44 -2.39 -0.01 3.08 16 19 C -0.14 -2.42 5.48 31.23 0.17 -2.25 16 20 C 0.05 0.79 7.76 72.94 0.57 1.36 16 21 O -0.38 -9.57 11.45 -141.42 -1.62 -11.19 16 22 C 0.02 0.60 3.96 22.72 0.09 0.69 16 23 H 0.09 1.99 7.38 -2.38 -0.02 1.97 16 24 C -0.04 -1.16 0.79 -59.94 -0.05 -1.20 16 25 C -0.15 -3.86 9.04 71.98 0.65 -3.21 16 26 C -0.12 -3.81 8.08 71.98 0.58 -3.23 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.78 4.82 -2.39 -0.01 1.77 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.91 6.45 -2.39 -0.02 1.90 16 33 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 34 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 35 H 0.08 3.31 3.80 -2.39 -0.01 3.30 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H -0.01 -0.77 6.64 -2.38 -0.02 -0.79 16 38 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.08 1.32 7.74 -2.39 -0.02 1.30 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.72 5.70 -2.38 -0.01 1.71 16 44 H 0.06 1.60 7.85 -2.39 -0.02 1.58 16 45 H 0.07 1.57 7.87 -2.39 -0.02 1.55 16 46 H 0.07 1.94 6.24 -2.39 -0.01 1.92 16 47 H 0.06 1.69 7.76 -2.39 -0.02 1.67 16 48 H 0.06 2.08 6.42 -2.39 -0.02 2.07 16 Total: -1.00 -65.09 352.14 2.46 -62.63 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.92 Total: 17.86 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.48 Total: -36.59 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.34 Total: -79.31 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.62 Total: -11.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.09 2.46 -62.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354204718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.509 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds