Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 C 1.52996 * 109.47031 * 184.19553 * 3 2 1 5 5 H 1.09000 * 109.47575 * 303.73074 * 4 3 2 6 6 C 1.53003 * 109.47234 * 63.73135 * 4 3 2 7 7 C 1.52998 * 109.46909 * 62.50478 * 6 4 3 8 8 C 1.54266 * 110.03169 * 280.15518 * 7 6 4 9 9 C 1.54894 * 104.19711 * 217.10779 * 8 7 6 10 10 C 1.54889 * 102.74853 * 37.94229 * 9 8 7 11 11 C 1.53872 * 110.03354 * 162.99074 * 7 6 4 12 12 C 1.50703 * 109.47277 * 183.72746 * 4 3 2 13 13 O 1.21274 * 120.00375 * 240.00453 * 12 4 3 14 14 N 1.34777 * 119.99724 * 60.00212 * 12 4 3 15 15 C 1.46502 * 120.00285 * 180.02562 * 14 12 4 16 16 H 1.09003 * 109.46403 * 324.99517 * 15 14 12 17 17 C 1.52995 * 109.47059 * 84.99725 * 15 14 12 18 18 C 1.50695 * 109.47125 * 204.99995 * 15 14 12 19 19 H 1.08001 * 120.00300 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00125 * 179.97438 * 18 15 14 21 21 N 1.31513 * 119.99371 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00300 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46871 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47133 * 119.99647 * 22 20 18 25 25 H 1.48492 * 109.46965 * 239.99609 * 22 20 18 26 26 H 1.09002 * 109.46600 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47372 * 299.99415 * 1 2 3 28 28 H 1.08998 * 109.47021 * 60.00419 * 1 2 3 29 29 H 1.08996 * 109.47372 * 240.00585 * 2 1 3 30 30 H 1.08997 * 109.47131 * 120.00126 * 2 1 3 31 31 H 1.09009 * 109.46967 * 64.19647 * 3 2 1 32 32 H 1.09002 * 109.47206 * 304.20003 * 3 2 1 33 33 H 1.09003 * 109.46685 * 302.51027 * 6 4 3 34 34 H 1.08995 * 109.47058 * 182.50241 * 6 4 3 35 35 H 1.09004 * 110.01832 * 41.59712 * 7 6 4 36 36 H 1.08997 * 110.49012 * 335.78520 * 8 7 6 37 37 H 1.08997 * 110.49016 * 98.43299 * 8 7 6 38 38 H 1.09004 * 110.75128 * 279.63026 * 9 8 7 39 39 H 1.08999 * 110.91733 * 156.33186 * 9 8 7 40 40 H 1.09006 * 110.48843 * 203.38780 * 10 9 8 41 41 H 1.08990 * 110.48671 * 80.73773 * 10 9 8 42 42 H 1.09003 * 110.03222 * 238.57195 * 11 7 6 43 43 H 1.09002 * 110.03012 * 359.94653 * 11 7 6 44 44 H 0.97005 * 120.00258 * 359.97438 * 14 12 4 45 45 H 1.09003 * 109.47112 * 180.02562 * 17 15 14 46 46 H 1.08998 * 109.47403 * 299.99949 * 17 15 14 47 47 H 1.09001 * 109.46987 * 60.00826 * 17 15 14 48 48 H 0.97003 * 119.99740 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5663 1.4439 -0.1055 5 1 3.9874 0.8529 0.7078 6 6 3.9854 0.8376 -1.4464 7 6 3.4467 1.7025 -2.5877 8 6 1.9578 1.3837 -2.8350 9 6 1.7998 1.4761 -4.3730 10 6 3.1262 0.8659 -4.8901 11 6 4.1896 1.3733 -3.8944 12 6 4.0750 2.8595 -0.0135 13 8 4.7101 3.3365 -0.9300 14 7 3.8241 3.5954 1.0874 15 6 4.3181 4.9717 1.1768 16 1 5.2852 5.0436 0.6790 17 6 3.3235 5.9156 0.4980 18 6 4.4690 5.3582 2.6255 19 1 4.2220 4.6494 3.4020 20 6 4.9233 6.6164 2.9597 21 7 5.2254 7.4790 2.0140 22 14 5.1110 7.0953 4.7555 23 1 4.7086 5.9543 5.6166 24 1 6.5277 7.4467 5.0286 25 1 4.2453 8.2656 5.0487 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7393 1.9342 0.9253 32 1 1.6165 1.9776 -0.8500 33 1 3.5798 -0.1705 -1.5319 34 1 5.0731 0.7978 -1.5029 35 1 3.5680 2.7583 -2.3450 36 1 1.7199 0.3786 -2.4868 37 1 1.3230 2.1196 -2.3415 38 1 1.7032 2.5147 -4.6896 39 1 0.9464 0.8893 -4.7126 40 1 3.3442 1.2239 -5.8963 41 1 3.0771 -0.2228 -4.8739 42 1 4.6707 2.2695 -4.2863 43 1 4.9345 0.5980 -3.7152 44 1 3.3158 3.2140 1.8203 45 1 3.6913 6.9396 0.5641 46 1 3.2145 5.6361 -0.5499 47 1 2.3566 5.8437 0.9959 48 1 5.5453 8.3640 2.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354424497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -75.077877 kcal Electronic energy + Delta-G solvation = -23654.449195 eV Core-core repulsion = 20514.785370 eV Total energy + Delta-G solvation = -3139.663825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95857 -37.82894 -35.56458 -34.75454 -32.32858 -32.03676 -29.42611 -28.62400 -27.91079 -25.55132 -25.23520 -23.43627 -21.23898 -20.62537 -20.32027 -19.42626 -18.94923 -16.95230 -16.25586 -15.54573 -15.27234 -15.16355 -14.63854 -14.36623 -14.03623 -13.58046 -13.25301 -13.19805 -12.94112 -12.83572 -12.38273 -12.11742 -11.91723 -11.67508 -11.62990 -11.19970 -11.14463 -11.05590 -10.94769 -10.93092 -10.80550 -10.70092 -10.54062 -10.40866 -10.27334 -10.22897 -10.17525 -9.92206 -9.82849 -9.01116 -8.68673 -8.47331 -7.81144 -6.10727 -4.19606 3.24141 3.31975 3.34664 3.48000 4.16859 4.41389 4.73277 4.78631 4.88028 4.95525 5.01837 5.10013 5.21627 5.29770 5.35814 5.48429 5.58081 5.62284 5.74288 5.76134 5.79411 5.84699 5.85770 5.87280 5.93265 5.99441 6.04041 6.09307 6.12653 6.22655 6.27378 6.29567 6.40376 6.49636 6.54412 6.63632 6.84854 6.93267 7.02905 7.18975 7.53045 7.61490 7.73022 7.95421 8.18195 8.74268 8.82421 9.22305 9.48675 10.95241 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.004314 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.529346 B = 6489.025302 C = 7190.429728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.127 4.127 4 C -0.110 4.110 5 H 0.087 0.913 6 C -0.088 4.088 7 C -0.104 4.104 8 C -0.125 4.125 9 C -0.128 4.128 10 C -0.124 4.124 11 C -0.116 4.116 12 C 0.505 3.495 13 O -0.549 6.549 14 N -0.710 5.710 15 C 0.264 3.736 16 H 0.047 0.953 17 C -0.145 4.145 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.387 0.613 45 H 0.088 0.912 46 H 0.014 0.986 47 H 0.025 0.975 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -14.899 -7.438 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.132 4.132 5 H 0.105 0.895 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.162 4.162 9 C -0.165 4.165 10 C -0.162 4.162 11 C -0.153 4.153 12 C 0.290 3.710 13 O -0.429 6.429 14 N -0.357 5.357 15 C 0.162 3.838 16 H 0.065 0.935 17 C -0.204 4.204 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.219 0.781 45 H 0.107 0.893 46 H 0.033 0.967 47 H 0.044 0.956 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.513 -14.327 -8.095 18.090 hybrid contribution -0.090 0.171 1.442 1.454 sum -7.603 -14.156 -6.653 17.392 Atomic orbital electron populations 1.21774 0.96090 1.01188 1.01918 1.21643 0.95612 0.96920 1.02010 1.21954 0.93553 0.97382 1.03543 1.21387 0.96925 0.95094 0.99799 0.89521 1.21512 1.00762 0.97720 0.92583 1.22106 0.93076 1.03258 0.93731 1.22836 0.97113 1.01242 0.95000 1.22531 0.96992 1.00617 0.96396 1.22355 0.95494 0.99784 0.98517 1.22157 0.97466 1.00549 0.95143 1.20420 0.80303 0.87301 0.82969 1.90576 1.41162 1.73295 1.37877 1.46557 1.54912 1.16409 1.17811 1.18705 0.93890 0.75147 0.96060 0.93496 1.22056 0.98388 1.03884 0.96038 1.21272 1.45574 0.98996 0.91209 0.92134 1.24890 0.94911 0.96189 0.97743 1.69918 1.43921 1.06402 1.31877 0.86415 0.77821 0.78477 0.84516 1.19759 1.20893 1.20899 0.93127 0.92765 0.92728 0.91413 0.92262 0.91784 0.89674 0.91932 0.91807 0.87582 0.91436 0.91591 0.91801 0.92303 0.92388 0.92219 0.92079 0.92361 0.78096 0.89309 0.96722 0.95605 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.22 5.17 -26.73 -0.14 -1.36 16 3 C -0.13 -1.55 4.08 -26.73 -0.11 -1.66 16 4 C -0.11 -1.57 2.52 -91.77 -0.23 -1.80 16 5 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.09 -1.18 3.98 -26.73 -0.11 -1.29 16 7 C -0.10 -1.46 2.36 -89.50 -0.21 -1.67 16 8 C -0.12 -1.47 4.52 -25.07 -0.11 -1.59 16 9 C -0.13 -1.40 6.91 -24.74 -0.17 -1.57 16 10 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 11 C -0.12 -1.50 6.42 -25.61 -0.16 -1.67 16 12 C 0.50 9.82 6.68 -10.98 -0.07 9.74 16 13 O -0.55 -12.63 13.30 5.56 0.07 -12.55 16 14 N -0.71 -14.72 4.94 -54.94 -0.27 -14.99 16 15 C 0.26 6.74 2.56 -69.09 -0.18 6.56 16 16 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 17 C -0.14 -3.63 9.26 37.16 0.34 -3.28 16 18 C -0.53 -14.18 8.73 -34.44 -0.30 -14.49 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.05 11.32 55.43 0.63 -24.43 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.64 4.69 -51.93 -0.24 0.40 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.80 7.46 -51.92 -0.39 0.41 16 32 H 0.09 1.10 4.16 -51.93 -0.22 0.88 16 33 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 34 H 0.06 0.93 7.89 -51.93 -0.41 0.53 16 35 H 0.11 1.92 5.18 -51.93 -0.27 1.65 16 36 H 0.07 0.72 5.33 -51.93 -0.28 0.44 16 37 H 0.07 0.82 6.15 -51.93 -0.32 0.50 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.72 7.54 -51.93 -0.39 0.33 16 44 H 0.39 7.07 7.91 -40.82 -0.32 6.75 16 45 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -29.19 355.34 -9.05 -38.24 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.47 Total: 7.55 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.35 Total: -14.90 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.36 Total: -39.41 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.19 -9.05 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354424497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.838 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds