Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.53011 * 109.47140 * 181.58557 * 3 2 1 5 5 H 1.09001 * 109.46778 * 303.74815 * 4 3 2 6 6 C 1.52999 * 109.46866 * 63.74965 * 4 3 2 7 7 C 1.52993 * 109.47215 * 62.72566 * 6 4 3 8 8 C 1.54268 * 110.03067 * 280.59106 * 7 6 4 9 9 C 1.54896 * 104.19585 * 217.10659 * 8 7 6 10 10 C 1.54887 * 102.74676 * 37.94056 * 9 8 7 11 11 C 1.53875 * 110.03187 * 163.42669 * 7 6 4 12 12 C 1.50695 * 109.46958 * 183.75285 * 4 3 2 13 13 O 1.21283 * 119.99838 * 239.99627 * 12 4 3 14 14 N 1.34770 * 120.00429 * 59.99698 * 12 4 3 15 15 C 1.46500 * 120.00405 * 179.97438 * 14 12 4 16 16 H 1.08999 * 109.46949 * 34.99983 * 15 14 12 17 17 C 1.53004 * 109.47251 * 275.00426 * 15 14 12 18 18 C 1.50692 * 109.47360 * 155.00288 * 15 14 12 19 19 H 1.07993 * 120.00476 * 31.80213 * 18 15 14 20 20 C 1.37879 * 119.99802 * 211.80021 * 18 15 14 21 21 N 1.31513 * 120.00194 * 178.03941 * 20 18 15 22 22 Si 1.86798 * 120.00176 * 358.04432 * 20 18 15 23 23 H 1.48499 * 109.47540 * 86.55136 * 22 20 18 24 24 H 1.48504 * 109.47273 * 206.55332 * 22 20 18 25 25 H 1.48503 * 109.47187 * 326.55016 * 22 20 18 26 26 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47347 * 300.00392 * 1 2 3 28 28 H 1.09009 * 109.46799 * 60.00022 * 1 2 3 29 29 H 1.08997 * 109.47430 * 240.00109 * 2 1 3 30 30 H 1.09001 * 109.47105 * 119.99889 * 2 1 3 31 31 H 1.08998 * 109.47400 * 61.58521 * 3 2 1 32 32 H 1.08996 * 109.47368 * 301.58138 * 3 2 1 33 33 H 1.09003 * 109.47380 * 302.71869 * 6 4 3 34 34 H 1.08999 * 109.46609 * 182.72376 * 6 4 3 35 35 H 1.08994 * 110.02017 * 42.03135 * 7 6 4 36 36 H 1.08998 * 110.48445 * 335.78059 * 8 7 6 37 37 H 1.09002 * 110.48703 * 98.42631 * 8 7 6 38 38 H 1.09001 * 110.75391 * 279.62925 * 9 8 7 39 39 H 1.09003 * 110.91516 * 156.32891 * 9 8 7 40 40 H 1.08998 * 110.48432 * 203.37703 * 10 9 8 41 41 H 1.09006 * 110.48299 * 80.73996 * 10 9 8 42 42 H 1.09007 * 110.03049 * 238.56443 * 11 7 6 43 43 H 1.09000 * 110.03682 * 359.94678 * 11 7 6 44 44 H 0.96996 * 120.00297 * 0.02562 * 14 12 4 45 45 H 1.08997 * 109.47615 * 184.79793 * 17 15 14 46 46 H 1.09001 * 109.46710 * 304.79972 * 17 15 14 47 47 H 1.09003 * 109.47329 * 64.79480 * 17 15 14 48 48 H 0.96996 * 120.00780 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5695 1.4427 -0.0399 5 1 3.9549 0.8640 0.7995 6 6 4.0455 0.8167 -1.3524 7 6 3.5613 1.6674 -2.5282 8 6 2.0805 1.3577 -2.8300 9 6 1.9853 1.4261 -4.3746 10 6 3.3255 0.7958 -4.8279 11 6 4.3529 1.3101 -3.7985 12 6 4.0742 2.8596 0.0530 13 8 4.7483 3.3231 -0.8423 14 7 3.7765 3.6117 1.1310 15 6 4.2676 4.9890 1.2216 16 1 4.2788 5.4368 0.2279 17 6 5.6856 4.9881 1.7964 18 6 3.3610 5.7874 2.1223 19 1 2.8610 5.3057 2.9495 20 6 3.1698 7.1330 1.8904 21 7 2.3487 7.8215 2.6528 22 14 4.0769 7.9781 0.4932 23 1 3.2992 7.8300 -0.7632 24 1 4.2382 9.4203 0.8084 25 1 5.4146 7.3560 0.3235 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7000 1.9481 0.9038 32 1 1.6537 1.9645 -0.8754 33 1 3.6406 -0.1913 -1.4420 34 1 5.1346 0.7727 -1.3599 35 1 3.6827 2.7258 -2.2980 36 1 1.8194 0.3605 -2.4756 37 1 1.4334 2.1071 -2.3743 38 1 1.9112 2.4601 -4.7115 39 1 1.1406 0.8412 -4.7386 40 1 3.5869 1.1351 -5.8301 41 1 3.2654 -0.2922 -4.7960 42 1 4.8577 2.1954 -4.1852 43 1 5.0826 0.5313 -3.5770 44 1 3.2377 3.2409 1.8473 45 1 6.0187 6.0154 1.9435 46 1 5.6897 4.4643 2.7523 47 1 6.3585 4.4837 1.1029 48 1 2.2139 8.7681 2.4895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354424499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = -74.633654 kcal Electronic energy + Delta-G solvation = -23766.556936 eV Core-core repulsion = 20626.912374 eV Total energy + Delta-G solvation = -3139.644562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04406 -37.92791 -35.59922 -34.86539 -32.33115 -32.07078 -30.02652 -28.71550 -28.12090 -25.58357 -25.26197 -23.48195 -21.23600 -20.64077 -20.20548 -19.51969 -19.12093 -17.21613 -16.30057 -15.81681 -15.38105 -15.21264 -14.68981 -14.39582 -13.93421 -13.66120 -13.31986 -13.19915 -12.99268 -12.76877 -12.54634 -12.39278 -12.13171 -11.87310 -11.78917 -11.40300 -11.19334 -11.16903 -11.12722 -10.97785 -10.83372 -10.76967 -10.56388 -10.48773 -10.40355 -10.21877 -9.96955 -9.86328 -9.83174 -9.15959 -8.83829 -8.68099 -7.98236 -6.21829 -4.24918 3.25809 3.34286 3.35418 3.41871 4.08022 4.33775 4.70271 4.76015 4.83834 4.94184 5.01592 5.07319 5.18565 5.28229 5.32929 5.45849 5.55225 5.60570 5.71826 5.74440 5.78481 5.80547 5.85326 5.86149 5.93351 5.97797 6.02678 6.08782 6.11133 6.18536 6.25842 6.27921 6.34828 6.38930 6.46878 6.51343 6.55527 6.61495 6.70072 6.89015 6.99234 7.21055 7.42891 7.60094 8.17483 8.62401 8.78912 9.06599 9.40774 10.90113 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.005158 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.895541 B = 5426.858878 C = 5981.948447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.130 4.130 4 C -0.109 4.109 5 H 0.088 0.912 6 C -0.088 4.088 7 C -0.105 4.105 8 C -0.126 4.126 9 C -0.128 4.128 10 C -0.124 4.124 11 C -0.115 4.115 12 C 0.505 3.495 13 O -0.553 6.553 14 N -0.703 5.703 15 C 0.233 3.767 16 H 0.047 0.953 17 C -0.150 4.150 18 C -0.530 4.530 19 H 0.078 0.922 20 C 0.081 3.919 21 N -0.891 5.891 22 Si 0.873 3.127 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.259 1.259 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.392 0.608 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -16.514 -8.912 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.167 4.167 4 C -0.131 4.131 5 H 0.106 0.894 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.163 4.163 9 C -0.165 4.165 10 C -0.161 4.161 11 C -0.153 4.153 12 C 0.291 3.709 13 O -0.433 6.433 14 N -0.351 5.351 15 C 0.131 3.869 16 H 0.065 0.935 17 C -0.209 4.209 18 C -0.568 4.568 19 H 0.096 0.904 20 C -0.123 4.123 21 N -0.528 5.528 22 Si 0.699 3.301 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.183 1.183 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.226 0.774 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.586 -15.956 -9.482 18.570 hybrid contribution 0.164 0.423 -0.172 0.485 sum -0.422 -15.533 -9.654 18.293 Atomic orbital electron populations 1.21772 0.96007 1.01173 1.02068 1.21634 0.95713 0.96829 1.01907 1.21987 0.93174 0.97458 1.04081 1.21381 0.97096 0.94610 0.99966 0.89431 1.21509 1.00583 0.97805 0.92661 1.22123 0.93243 1.03281 0.93664 1.22846 0.97141 1.01382 0.94912 1.22531 0.96933 1.00583 0.96490 1.22354 0.95569 0.99750 0.98475 1.22153 0.97539 1.00399 0.95185 1.20537 0.80385 0.87528 0.82476 1.90564 1.40091 1.73942 1.38749 1.46558 1.52671 1.15187 1.20686 1.19016 0.91561 0.79048 0.97325 0.93498 1.22278 0.98334 1.00737 0.99515 1.21012 1.27956 0.93938 1.13872 0.90431 1.24903 0.94188 0.97247 0.95997 1.69879 1.35133 1.08729 1.39022 0.86935 0.81654 0.78683 0.82786 1.19958 1.21234 1.18313 0.93138 0.92624 0.92723 0.91501 0.92277 0.91443 0.89553 0.91821 0.91883 0.87615 0.91352 0.91440 0.91807 0.92242 0.92403 0.92188 0.92170 0.92374 0.77447 0.92744 0.93721 0.95270 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.22 5.17 -26.73 -0.14 -1.36 16 3 C -0.13 -1.60 4.08 -26.73 -0.11 -1.71 16 4 C -0.11 -1.49 2.52 -91.77 -0.23 -1.72 16 5 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.09 -1.13 3.98 -26.73 -0.11 -1.24 16 7 C -0.11 -1.46 2.37 -89.50 -0.21 -1.67 16 8 C -0.13 -1.50 4.51 -25.07 -0.11 -1.61 16 9 C -0.13 -1.42 6.91 -24.74 -0.17 -1.59 16 10 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 11 C -0.12 -1.46 6.42 -25.61 -0.16 -1.62 16 12 C 0.51 9.37 6.69 -10.99 -0.07 9.30 16 13 O -0.55 -12.03 13.28 5.55 0.07 -11.96 16 14 N -0.70 -13.98 4.94 -54.94 -0.27 -14.25 16 15 C 0.23 5.54 2.13 -69.08 -0.15 5.40 16 16 H 0.05 1.22 5.21 -51.93 -0.27 0.95 16 17 C -0.15 -3.32 9.18 37.16 0.34 -2.97 16 18 C -0.53 -14.23 9.05 -34.44 -0.31 -14.54 16 19 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 22 Si 0.87 21.62 26.33 -169.99 -4.48 17.14 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.26 -6.27 6.26 56.52 0.35 -5.92 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.63 4.69 -51.93 -0.24 0.39 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.87 7.46 -51.93 -0.39 0.49 16 32 H 0.09 1.15 4.13 -51.93 -0.21 0.93 16 33 H 0.06 0.69 6.02 -51.93 -0.31 0.38 16 34 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.11 1.88 5.16 -51.93 -0.27 1.62 16 36 H 0.07 0.73 5.26 -51.93 -0.27 0.45 16 37 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 44 H 0.39 6.99 7.96 -40.82 -0.33 6.67 16 45 H 0.05 1.22 6.99 -51.93 -0.36 0.86 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -29.80 352.79 -8.38 -38.18 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.46 Total: 6.85 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.34 Total: -15.75 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.50 Total: -39.77 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.48 Total: 17.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.80 -8.38 -38.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354424499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.458 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds