Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 C 1.52996 * 109.47289 * 182.24143 * 3 2 1 5 5 H 1.09005 * 109.47171 * 176.77795 * 4 3 2 6 6 C 1.52996 * 109.47509 * 56.77157 * 4 3 2 7 7 C 1.53002 * 109.46681 * 68.71832 * 6 4 3 8 8 C 1.54270 * 110.03312 * 288.35832 * 7 6 4 9 9 C 1.54881 * 104.19701 * 217.10802 * 8 7 6 10 10 C 1.54886 * 102.75000 * 37.94374 * 9 8 7 11 11 C 1.53879 * 110.02817 * 171.19724 * 7 6 4 12 12 C 1.50708 * 109.47038 * 296.77147 * 4 3 2 13 13 O 1.21277 * 119.99792 * 117.50190 * 12 4 3 14 14 N 1.34772 * 120.00067 * 297.78429 * 12 4 3 15 15 C 1.46501 * 120.00243 * 174.03330 * 14 12 4 16 16 H 1.09000 * 109.46580 * 34.99687 * 15 14 12 17 17 C 1.53001 * 109.46843 * 275.00042 * 15 14 12 18 18 C 1.50696 * 109.47339 * 154.99686 * 15 14 12 19 19 H 1.07998 * 119.99694 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99792 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00342 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99731 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.46793 * 90.00448 * 22 20 18 24 24 H 1.48503 * 109.46722 * 209.99786 * 22 20 18 25 25 H 1.48500 * 109.47190 * 330.00085 * 22 20 18 26 26 H 1.08998 * 109.47140 * 299.99685 * 1 2 3 27 27 H 1.08994 * 109.47496 * 59.99942 * 1 2 3 28 28 H 1.08995 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47140 * 240.00314 * 2 1 3 30 30 H 1.08994 * 109.47496 * 120.00057 * 2 1 3 31 31 H 1.09003 * 109.46966 * 62.23903 * 3 2 1 32 32 H 1.08999 * 109.47042 * 302.23838 * 3 2 1 33 33 H 1.08997 * 109.47509 * 188.71520 * 6 4 3 34 34 H 1.08997 * 109.47347 * 308.72148 * 6 4 3 35 35 H 1.08996 * 110.02056 * 49.80543 * 7 6 4 36 36 H 1.09001 * 110.48388 * 335.78903 * 8 7 6 37 37 H 1.08999 * 110.48142 * 98.43013 * 8 7 6 38 38 H 1.09000 * 110.75866 * 279.62941 * 9 8 7 39 39 H 1.09006 * 110.91816 * 156.33179 * 9 8 7 40 40 H 1.09005 * 110.48698 * 203.37638 * 10 9 8 41 41 H 1.08997 * 110.48529 * 80.73595 * 10 9 8 42 42 H 1.09004 * 110.02871 * 238.56917 * 11 7 6 43 43 H 1.08996 * 110.03302 * 359.95039 * 11 7 6 44 44 H 0.97001 * 119.99894 * 354.03519 * 14 12 4 45 45 H 1.09008 * 109.47075 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.47135 * 299.99757 * 17 15 14 47 47 H 1.09001 * 109.47329 * 59.99939 * 17 15 14 48 48 H 0.96997 * 120.00506 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5689 1.4430 -0.0564 5 1 3.9301 2.4698 -0.1142 6 6 4.0340 0.6685 -1.2912 7 6 3.6634 1.4504 -2.5530 8 6 2.1383 1.3970 -2.7789 9 6 1.9853 1.2984 -4.3170 10 6 3.1606 0.3731 -4.7188 11 6 4.3134 0.7993 -3.7864 12 6 4.1176 0.7866 1.1843 13 8 4.7743 -0.2289 1.0932 14 7 3.8736 1.3249 2.3955 15 6 4.2936 0.6194 3.6089 16 1 5.2328 0.0995 3.4200 17 6 3.2198 -0.3954 4.0062 18 6 4.4848 1.6121 4.7264 19 1 4.3105 2.6633 4.5506 20 6 4.8813 1.1781 5.9736 21 7 5.0921 -0.1022 6.1881 22 14 5.1176 2.4085 7.3592 23 1 3.8396 2.5746 8.0969 24 1 6.1646 1.9126 8.2882 25 1 5.5365 3.7163 6.7938 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7098 1.9446 0.9094 32 1 1.6443 1.9678 -0.8692 33 1 5.1151 0.5353 -1.2507 34 1 3.5483 -0.3070 -1.3125 35 1 3.9919 2.4855 -2.4605 36 1 1.7116 0.5179 -2.2959 37 1 1.6654 2.3056 -2.4060 38 1 2.0908 2.2798 -4.7795 39 1 1.0297 0.8475 -4.5850 40 1 3.4339 0.5344 -5.7616 41 1 2.8991 -0.6713 -4.5491 42 1 4.9568 1.5188 -4.2930 43 1 4.8936 -0.0732 -3.4859 44 1 3.4198 2.1796 2.4639 45 1 3.5325 -0.9207 4.9087 46 1 2.2806 0.1245 4.1949 47 1 3.0815 -1.1134 3.1978 48 1 5.3714 -0.4075 7.0654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354424501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -78.020434 kcal Electronic energy + Delta-G solvation = -23464.897524 eV Core-core repulsion = 20325.106100 eV Total energy + Delta-G solvation = -3139.791424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88699 -38.18672 -35.45806 -34.68335 -32.29294 -32.09934 -29.49329 -28.84962 -27.99125 -25.56385 -25.23025 -23.18960 -21.72511 -20.78583 -20.27369 -19.46756 -18.82955 -16.91191 -16.07963 -15.75726 -15.33124 -15.05781 -14.86083 -14.57514 -14.08741 -13.58744 -13.32338 -13.27304 -12.97287 -12.77070 -12.35875 -12.17081 -11.86227 -11.69019 -11.64713 -11.25956 -11.17639 -11.10704 -11.01729 -10.91386 -10.71755 -10.69471 -10.66330 -10.42553 -10.35525 -10.28395 -10.24325 -10.19471 -9.92848 -9.00035 -8.77888 -8.51465 -7.80693 -6.09643 -4.18582 3.25332 3.32180 3.34545 3.52515 4.14524 4.39538 4.54354 4.58188 4.71971 4.93421 5.08746 5.15594 5.22528 5.28854 5.31616 5.36908 5.46506 5.56577 5.58191 5.63765 5.66719 5.75948 5.80917 5.83282 5.88271 5.89800 5.96526 6.03403 6.09990 6.12203 6.21312 6.24483 6.34622 6.40609 6.47669 6.54895 6.67340 6.86138 6.99738 7.19100 7.53537 7.62496 7.74187 7.96174 8.19000 8.75639 8.83624 9.23620 9.49617 10.96317 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.003763 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.510637 B = 7438.627072 C = 7758.981429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.110 4.110 5 H 0.086 0.914 6 C -0.095 4.095 7 C -0.091 4.091 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.124 4.124 11 C -0.122 4.122 12 C 0.507 3.493 13 O -0.558 6.558 14 N -0.711 5.711 15 C 0.263 3.737 16 H 0.048 0.952 17 C -0.144 4.144 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.387 0.613 45 H 0.089 0.911 46 H 0.025 0.975 47 H 0.012 0.988 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 3.806 -18.133 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.160 4.160 4 C -0.131 4.131 5 H 0.104 0.896 6 C -0.132 4.132 7 C -0.109 4.109 8 C -0.166 4.166 9 C -0.166 4.166 10 C -0.162 4.162 11 C -0.160 4.160 12 C 0.292 3.708 13 O -0.437 6.437 14 N -0.358 5.358 15 C 0.161 3.839 16 H 0.066 0.934 17 C -0.203 4.203 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.219 0.781 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.031 0.969 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.359 2.925 -17.998 19.663 hybrid contribution -0.047 1.088 0.978 1.464 sum -7.406 4.013 -17.020 18.991 Atomic orbital electron populations 1.21754 0.96175 1.01331 1.01421 1.21710 0.95390 0.96975 1.02772 1.21937 0.93225 0.97799 1.03086 1.21397 0.96813 1.00606 0.94320 0.89552 1.21571 1.01771 0.98713 0.91165 1.21812 0.95122 0.99455 0.94545 1.22891 0.96110 1.02361 0.95227 1.22546 0.98058 0.99418 0.96569 1.22347 0.95557 0.99531 0.98768 1.22219 0.97649 1.00496 0.95588 1.20422 0.80251 0.85131 0.84985 1.90632 1.40313 1.25752 1.87014 1.46492 1.58859 1.23762 1.06693 1.18699 0.94292 0.91001 0.79863 0.93435 1.22065 0.98233 0.98682 1.01325 1.21232 1.47395 0.93466 0.94948 0.92182 1.24890 0.94924 0.95376 0.98553 1.69902 1.45778 1.13471 1.23019 0.86467 0.77906 0.81155 0.81681 1.20580 1.21087 1.19876 0.92782 0.93087 0.93068 0.91294 0.91564 0.91768 0.89794 0.91305 0.90836 0.91308 0.90174 0.91374 0.91937 0.91996 0.92209 0.91784 0.92174 0.91536 0.78120 0.89255 0.95556 0.96908 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.13 -1.73 4.57 -26.73 -0.12 -1.85 16 3 C -0.12 -1.51 4.32 -26.73 -0.12 -1.63 16 4 C -0.11 -1.57 2.47 -91.77 -0.23 -1.80 16 5 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 6 C -0.09 -1.27 3.32 -26.73 -0.09 -1.36 16 7 C -0.09 -0.95 2.90 -89.50 -0.26 -1.21 16 8 C -0.13 -1.20 4.35 -25.07 -0.11 -1.31 16 9 C -0.13 -1.08 6.91 -24.74 -0.17 -1.25 16 10 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 11 C -0.12 -1.20 6.45 -25.61 -0.17 -1.36 16 12 C 0.51 10.10 6.02 -10.98 -0.07 10.03 16 13 O -0.56 -13.43 15.50 5.56 0.09 -13.34 16 14 N -0.71 -14.95 4.91 -54.93 -0.27 -15.21 16 15 C 0.26 6.80 2.61 -69.08 -0.18 6.62 16 16 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 17 C -0.14 -3.63 9.26 37.16 0.34 -3.29 16 18 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 22 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.88 4.51 -51.93 -0.23 0.64 16 30 H 0.07 1.10 7.40 -51.93 -0.38 0.72 16 31 H 0.06 0.81 7.77 -51.93 -0.40 0.41 16 32 H 0.08 0.85 4.28 -51.93 -0.22 0.63 16 33 H 0.07 1.05 7.83 -51.93 -0.41 0.64 16 34 H 0.07 1.05 5.74 -51.93 -0.30 0.76 16 35 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16 36 H 0.08 0.80 4.74 -51.93 -0.25 0.55 16 37 H 0.07 0.59 6.48 -51.93 -0.34 0.26 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 44 H 0.39 7.14 8.27 -40.82 -0.34 6.80 16 45 H 0.09 2.44 6.07 -51.92 -0.32 2.13 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -30.02 358.38 -9.11 -39.13 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.58 Total: 6.64 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.36 Total: -13.86 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.36 Total: -39.80 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.02 -9.11 -39.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354424501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.887 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds