Wall clock time and date at job start Tue Mar 31 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46971 * 90.00441 * 9 7 5 11 11 H 1.48505 * 109.46977 * 209.99978 * 9 7 5 12 12 H 1.48493 * 109.47395 * 329.99873 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.53002 * 109.46949 * 300.00134 * 18 17 15 20 20 C 1.53006 * 109.47352 * 59.99543 * 18 17 15 21 21 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 22 22 C 1.52999 * 117.49768 * 248.74286 * 21 18 17 23 23 C 1.53005 * 117.49709 * 180.08273 * 21 18 17 24 24 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 25 25 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 29 29 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 30 30 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 32 32 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 34 34 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 38 38 H 1.08994 * 109.47439 * 59.99953 * 19 18 17 39 39 H 1.09001 * 109.47432 * 180.02562 * 19 18 17 40 40 H 1.09008 * 109.46768 * 299.99629 * 19 18 17 41 41 H 1.08996 * 109.46527 * 60.00105 * 20 18 17 42 42 H 1.09001 * 109.46925 * 180.02562 * 20 18 17 43 43 H 1.09003 * 109.47167 * 300.00441 * 20 18 17 44 44 H 1.09000 * 115.55183 * 34.41950 * 21 18 17 45 45 H 1.09002 * 117.50063 * 0.02562 * 22 21 18 46 46 H 1.09003 * 117.49804 * 145.02570 * 22 21 18 47 47 H 1.08999 * 117.50068 * 214.97430 * 23 21 18 48 48 H 1.08996 * 117.49806 * 0.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6258 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 2.2271 1.4399 -5.6614 11 1 1.0825 -0.5801 -6.3613 12 1 -0.0595 1.0373 -4.9612 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 6 1.8762 -0.5082 6.1492 19 6 1.3675 -1.9512 6.1435 20 6 3.4062 -0.5070 6.1549 21 6 1.3615 0.2096 7.3984 22 6 2.3873 0.9433 8.2647 23 6 1.7629 -0.3642 8.7588 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6765 1.9563 0.8901 30 1 3.1300 -0.7207 -1.2494 31 1 1.6768 -1.7488 -1.2492 32 1 2.8596 -1.8836 -4.7337 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.9942 0.7581 2.3564 36 1 1.7326 1.2439 4.9041 37 1 0.2803 0.2149 4.8959 38 1 1.7346 -2.4623 5.2535 39 1 1.7276 -2.4670 7.0336 40 1 0.2774 -1.9521 6.1395 41 1 3.7686 0.5210 6.1589 42 1 3.7667 -1.0232 7.0446 43 1 3.7733 -1.0181 5.2648 44 1 0.3685 0.6508 7.3115 45 1 3.4288 0.9149 7.9444 46 1 2.0691 1.8670 8.7481 47 1 1.0344 -0.3000 9.5669 48 1 2.3941 -1.2528 8.7637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354980909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:49 Heat of formation + Delta-G solvation = -42.225402 kcal Electronic energy + Delta-G solvation = -22812.818752 eV Core-core repulsion = 19674.579518 eV Total energy + Delta-G solvation = -3138.239235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28362 -38.53655 -37.04504 -33.77208 -33.45753 -32.10586 -28.58106 -27.35070 -27.04007 -26.52081 -25.79884 -23.64171 -22.63616 -22.40213 -20.18959 -18.65327 -18.08151 -16.90435 -16.39540 -15.99778 -15.44831 -15.31938 -14.71124 -14.50838 -14.09100 -13.75874 -13.49181 -13.38603 -13.02223 -12.80237 -12.41754 -12.34394 -12.05979 -11.85819 -11.72457 -11.41770 -11.17608 -11.13308 -11.03974 -10.95075 -10.86509 -10.80447 -10.64079 -10.43642 -10.40083 -10.25761 -10.01081 -9.87676 -9.45012 -9.09929 -8.92187 -8.65319 -8.36714 -6.00729 -4.02048 2.85763 3.30156 3.37153 3.38556 3.44882 3.64805 4.44118 4.49091 4.58299 4.73763 4.83991 5.00876 5.08456 5.23279 5.34790 5.37649 5.42775 5.50071 5.54452 5.61140 5.64969 5.68097 5.74687 5.77877 5.87559 5.94042 6.01036 6.08737 6.16520 6.20270 6.22521 6.30013 6.39094 6.45302 6.48646 6.62138 6.63973 6.83132 7.05941 7.06610 7.12840 7.63249 7.75732 7.79376 7.98059 8.39613 8.50700 9.02818 9.61115 11.10750 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.002904 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.121029 B = 9639.249232 C = 9805.328855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.507 3.493 16 O -0.538 6.538 17 C -0.131 4.131 18 C -0.013 4.013 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.143 4.143 22 C -0.186 4.186 23 C -0.178 4.178 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 5.329 21.506 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.005 3.995 14 N -0.374 5.374 15 C 0.294 3.706 16 O -0.416 6.416 17 C -0.171 4.171 18 C -0.013 4.013 19 C -0.208 4.208 20 C -0.213 4.213 21 C -0.161 4.161 22 C -0.223 4.223 23 C -0.215 4.215 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.793 4.497 21.432 22.076 hybrid contribution -0.647 0.898 -0.945 1.455 sum -3.440 5.396 20.487 21.463 Atomic orbital electron populations 1.21756 0.95314 1.01121 1.00199 1.20898 0.95434 0.95828 0.95141 1.21757 1.00505 0.95933 1.00198 1.19088 0.96328 0.95219 0.89519 1.21183 1.31190 1.12029 0.90532 0.92277 1.25017 0.95339 0.95070 0.99096 1.69965 1.37018 1.22973 1.23445 0.86649 0.79175 0.79418 0.83070 1.20773 1.21333 1.19953 1.21598 0.98819 0.95979 0.83064 1.46273 1.53195 1.31948 1.06022 1.20583 0.80528 0.84782 0.84706 1.90565 1.38167 1.26497 1.86400 1.21736 1.02143 1.00515 0.92732 1.19728 0.95959 0.95006 0.90656 1.22079 1.00016 0.95184 1.03474 1.22228 0.94189 1.01372 1.03539 1.22376 0.99102 1.03235 0.91421 1.23161 0.99362 0.95720 1.04048 1.22919 1.03857 0.97595 0.97136 0.95260 0.91469 0.93409 0.93409 0.91478 0.95257 0.96382 0.96365 0.93033 0.91933 0.91918 0.76781 0.89142 0.89215 0.89485 0.93217 0.93614 0.93237 0.93224 0.89410 0.88066 0.88067 0.89304 0.89190 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.13 2.22 4.56 -4.04 -0.02 2.20 16 14 N -0.72 -10.02 4.96 -60.29 -0.30 -10.32 16 15 C 0.51 6.99 7.24 -10.98 -0.08 6.91 16 16 O -0.54 -9.10 11.35 5.55 0.06 -9.04 16 17 C -0.13 -1.33 4.75 -27.88 -0.13 -1.46 16 18 C -0.01 -0.13 0.62 -154.51 -0.10 -0.23 16 19 C -0.15 -1.71 8.02 37.16 0.30 -1.41 16 20 C -0.16 -1.75 6.77 37.16 0.25 -1.50 16 21 C -0.14 -1.23 5.15 -90.62 -0.47 -1.70 16 22 C -0.19 -1.49 9.57 -26.69 -0.26 -1.74 16 23 C -0.18 -1.44 9.39 -26.69 -0.25 -1.69 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.66 6.16 -40.82 -0.25 4.41 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.22 5.51 -51.93 -0.29 0.93 16 39 H 0.05 0.52 7.29 -51.93 -0.38 0.15 16 40 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.05 0.51 6.97 -51.93 -0.36 0.15 16 42 H 0.05 0.51 7.07 -51.93 -0.37 0.15 16 43 H 0.09 1.22 5.51 -51.93 -0.29 0.94 16 44 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 45 H 0.10 0.84 5.85 -51.93 -0.30 0.53 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.79 7.07 -51.93 -0.37 0.42 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -29.43 360.36 -8.30 -37.73 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.51 Total: 3.12 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.71 Total: -17.37 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.44 Total: -35.97 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.43 -8.30 -37.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354980909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.495 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds