Wall clock time and date at job start Tue Mar 31 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50699 * 109.47398 * 270.00022 * 3 2 1 5 5 H 1.07994 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00243 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00002 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99860 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46557 * 90.00433 * 8 6 4 10 10 H 1.48502 * 109.47086 * 210.00227 * 8 6 4 11 11 H 1.48498 * 109.47273 * 330.00402 * 8 6 4 12 12 C 1.34779 * 120.00050 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00062 * 179.97438 * 12 2 1 14 14 C 1.50695 * 119.99727 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47088 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47056 * 59.99919 * 15 14 12 17 17 C 1.53002 * 109.46982 * 300.00233 * 15 14 12 18 18 C 1.52997 * 109.47452 * 180.02562 * 15 14 12 19 19 C 1.53006 * 109.47127 * 59.99878 * 18 15 14 20 20 C 1.52997 * 109.47127 * 179.97438 * 19 18 15 21 21 C 1.53000 * 109.47060 * 300.00449 * 20 19 18 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.47232 * 179.97438 * 18 15 14 24 24 H 1.08997 * 109.46641 * 269.99959 * 1 2 3 25 25 H 1.09005 * 109.46913 * 29.99878 * 1 2 3 26 26 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 27 27 H 1.09001 * 109.47240 * 30.00547 * 3 2 1 28 28 H 1.09002 * 109.47248 * 150.00128 * 3 2 1 29 29 H 0.96999 * 119.99554 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47002 * 60.00392 * 14 12 2 31 31 H 1.08998 * 109.47789 * 300.00054 * 14 12 2 32 32 H 1.08996 * 109.47452 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.47054 * 300.00209 * 16 15 14 34 34 H 1.09001 * 109.46997 * 59.99942 * 16 15 14 35 35 H 1.09002 * 109.47067 * 299.99652 * 17 15 14 36 36 H 1.09000 * 109.47312 * 59.99678 * 17 15 14 37 37 H 1.09004 * 109.46930 * 179.97438 * 17 15 14 38 38 H 1.09001 * 109.46832 * 300.00199 * 18 15 14 39 39 H 1.08998 * 109.46505 * 59.99871 * 19 18 15 40 40 H 1.08996 * 109.46884 * 300.00752 * 19 18 15 41 41 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 43 43 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 45 45 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 46 46 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 47 47 H 1.09002 * 109.47045 * 59.99942 * 23 18 15 48 48 H 1.09001 * 109.47375 * 299.99867 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.3457 3.2574 -2.9127 8 14 3.7338 3.9288 -0.2528 9 1 5.1070 3.5069 0.1237 10 1 3.7497 5.3554 -0.6646 11 1 2.8274 3.7596 0.9112 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0017 15 6 2.3797 -3.6352 -0.0027 16 6 3.2593 -3.5553 1.2465 17 6 3.2593 -3.5530 -1.2519 18 6 1.6147 -4.9602 -0.0046 19 6 0.7355 -5.0398 -1.2542 20 6 -0.0290 -6.3651 -1.2564 21 6 0.9657 -7.5276 -1.2577 22 6 1.8448 -7.4481 -0.0080 23 6 2.6089 -6.1231 -0.0062 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.8225 4.0833 -3.0898 30 1 0.7592 -2.5294 -0.8920 31 1 0.7584 -2.5307 0.8880 32 1 3.9679 -4.3835 1.2456 33 1 3.8043 -2.6113 1.2474 34 1 2.6326 -3.6138 2.1365 35 1 2.6327 -3.6100 -2.1419 36 1 3.8043 -2.6091 -1.2511 37 1 3.9679 -4.3813 -1.2524 38 1 0.9877 -5.0190 0.8851 39 1 1.3625 -4.9810 -2.1439 40 1 0.0273 -4.2113 -1.2535 41 1 -0.6550 -6.4220 -2.1469 42 1 -0.6559 -6.4243 -0.3667 43 1 0.4210 -8.4718 -1.2597 44 1 1.5926 -7.4684 -2.1474 45 1 1.2180 -7.5073 0.8816 46 1 2.5532 -8.2766 -0.0087 47 1 3.2356 -6.0666 0.8838 48 1 3.2356 -6.0642 -0.8962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354983151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:09 Heat of formation + Delta-G solvation = -64.394739 kcal Electronic energy + Delta-G solvation = -23686.133024 eV Core-core repulsion = 20546.932455 eV Total energy + Delta-G solvation = -3139.200570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20453 -38.55107 -35.61146 -34.54660 -32.53074 -31.00520 -29.79154 -28.81074 -27.30949 -26.94253 -25.67841 -23.30989 -22.52693 -21.97245 -20.06123 -18.65015 -17.90550 -16.93271 -16.59506 -15.34428 -15.21892 -14.97722 -14.52685 -14.26595 -14.18678 -13.96508 -13.71085 -13.27552 -13.10682 -12.63133 -12.42758 -12.39330 -12.18592 -11.99948 -11.83604 -11.57779 -11.48977 -11.43423 -11.10554 -11.08443 -10.93338 -10.76022 -10.60759 -10.53876 -10.45685 -10.11613 -10.09156 -9.92845 -9.78253 -9.50465 -8.63932 -8.57213 -7.62342 -6.07257 -4.05645 3.30120 3.36133 3.37875 3.42522 3.91980 4.40899 4.61001 4.63578 4.68974 4.99962 5.05960 5.09660 5.25730 5.30198 5.34774 5.43649 5.45283 5.47641 5.57795 5.59775 5.60547 5.71385 5.81401 5.86214 5.89189 5.92048 5.97645 6.04578 6.10333 6.13126 6.16305 6.19281 6.20359 6.26276 6.33454 6.38710 6.49414 6.55599 6.74658 6.84150 6.95570 7.02456 7.41641 7.63491 8.32477 8.49802 8.95724 9.08401 9.53532 11.06210 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030874 B = 0.003890 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.706794 B = 7196.661241 C = 7330.103804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.532 6.532 14 C -0.132 4.132 15 C -0.037 4.037 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.074 4.074 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -18.960 6.889 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.095 3.905 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.411 6.411 14 C -0.172 4.172 15 C -0.038 4.038 16 C -0.210 4.210 17 C -0.213 4.213 18 C -0.092 4.092 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.757 -18.783 6.781 21.082 hybrid contribution 0.113 0.679 0.517 0.861 sum -6.643 -18.104 7.299 20.619 Atomic orbital electron populations 1.21643 0.81185 1.02887 1.00300 1.47884 1.06151 1.07266 1.71942 1.19632 0.92427 0.80245 0.98242 1.21336 1.36801 1.07067 0.91322 0.90832 1.24865 0.95290 0.97369 0.95539 1.69901 1.41583 1.23566 1.18649 0.86845 0.80105 0.79729 0.82961 1.19925 1.21124 1.19116 1.20393 0.88167 0.85054 0.76848 1.90524 1.13982 1.86781 1.49788 1.21834 0.98972 0.93135 1.03230 1.20218 0.94556 0.92007 0.97009 1.22142 0.99511 1.03915 0.95474 1.22197 0.99497 1.03922 0.95648 1.21167 0.96156 0.94012 0.97869 1.21734 0.98595 0.96814 0.98665 1.21532 0.97671 0.94994 1.01405 1.21532 0.97822 0.97947 0.98377 1.21529 0.98539 0.97598 0.97962 1.21678 0.97857 0.93550 1.02334 0.93815 0.90728 0.92181 0.95481 0.94595 0.92608 0.89364 0.90014 0.93213 0.89445 0.94077 0.93507 0.89265 0.93367 0.91674 0.91433 0.91837 0.92355 0.92309 0.92594 0.92117 0.92343 0.92466 0.91788 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.33 2.86 -182.95 -0.52 -12.85 16 3 C 0.22 5.29 4.23 -5.20 -0.02 5.27 16 4 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 8 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.51 10.02 7.08 -10.99 -0.08 9.95 16 13 O -0.53 -12.30 10.93 5.56 0.06 -12.24 16 14 C -0.13 -1.90 2.97 -27.88 -0.08 -1.98 16 15 C -0.04 -0.51 0.32 -154.51 -0.05 -0.56 16 16 C -0.15 -2.18 7.82 37.16 0.29 -1.89 16 17 C -0.16 -2.38 7.47 37.16 0.28 -2.11 16 18 C -0.07 -0.80 1.55 -90.62 -0.14 -0.94 16 19 C -0.12 -1.24 4.50 -26.73 -0.12 -1.36 16 20 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 22 C -0.12 -1.04 5.92 -26.76 -0.16 -1.19 16 23 C -0.12 -1.19 4.49 -26.76 -0.12 -1.31 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 27 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 28 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.09 1.19 5.69 -51.93 -0.30 0.89 16 31 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 33 H 0.09 1.53 5.51 -51.93 -0.29 1.25 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 36 H 0.09 1.73 5.51 -51.93 -0.29 1.44 16 37 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 40 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 48 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -32.08 347.77 -7.96 -40.04 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.50 Total: -0.03 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.35 Total: -10.13 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.25 Total: -39.92 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.06 Total: -12.24 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.08 -7.96 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354983151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.355 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds