Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46691 * 2 1 4 4 H 1.09002 * 109.47237 * 55.43577 * 3 2 1 5 5 C 1.50707 * 109.46948 * 175.43300 * 3 2 1 6 6 H 1.07999 * 120.00214 * 120.00053 * 5 3 2 7 7 C 1.37880 * 119.99513 * 300.00344 * 5 3 2 8 8 N 1.31514 * 120.00281 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99689 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47364 * 89.99685 * 9 7 5 11 11 H 1.48501 * 109.47190 * 209.99874 * 9 7 5 12 12 H 1.48504 * 109.47114 * 329.99404 * 9 7 5 13 13 N 1.46903 * 109.47476 * 295.42834 * 3 2 1 14 14 C 1.46900 * 110.99692 * 151.88715 * 13 3 2 15 15 C 1.53008 * 109.46537 * 207.70570 * 14 13 3 16 16 C 1.53014 * 109.45455 * 179.97438 * 15 14 13 17 17 C 1.52941 * 109.46562 * 59.93030 * 16 15 14 18 18 C 1.53123 * 109.49483 * 60.22709 * 17 16 15 19 19 C 1.53111 * 109.14951 * 62.93440 * 18 17 16 20 20 O 1.42893 * 109.40539 * 57.53599 * 19 18 17 21 21 C 1.42906 * 114.13357 * 298.84116 * 20 19 18 22 22 C 1.53103 * 109.41099 * 61.15756 * 21 20 19 23 23 C 1.52919 * 109.59395 * 300.07497 * 17 16 15 24 24 C 1.52999 * 109.46037 * 87.68579 * 14 13 3 25 25 H 1.08998 * 109.47403 * 57.64871 * 1 2 3 26 26 H 1.09004 * 109.46841 * 177.65232 * 1 2 3 27 27 H 1.09001 * 109.47099 * 297.64277 * 1 2 3 28 28 H 1.09002 * 109.46508 * 240.00181 * 2 1 3 29 29 H 1.08992 * 109.47005 * 120.00549 * 2 1 3 30 30 H 0.97005 * 119.99743 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99425 * 27.93599 * 13 3 2 32 32 H 1.08993 * 109.47157 * 327.69561 * 14 13 3 33 33 H 1.08996 * 109.47232 * 59.97869 * 15 14 13 34 34 H 1.09007 * 109.47293 * 299.97036 * 15 14 13 35 35 H 1.09002 * 109.46607 * 299.93742 * 16 15 14 36 36 H 1.08997 * 109.47354 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.53047 * 182.83747 * 18 17 16 38 38 H 1.09001 * 109.52534 * 303.03455 * 18 17 16 39 39 H 1.09002 * 109.47828 * 177.51848 * 19 18 17 40 40 H 1.09000 * 109.48208 * 297.55708 * 19 18 17 41 41 H 1.08999 * 109.47777 * 301.17259 * 21 20 19 42 42 H 1.09001 * 109.48195 * 181.13711 * 21 20 19 43 43 H 1.08994 * 109.52708 * 182.56894 * 22 21 20 44 44 H 1.08998 * 109.52877 * 62.36826 * 22 21 20 45 45 H 1.09003 * 109.47602 * 179.90665 * 23 17 16 46 46 H 1.08998 * 109.47167 * 299.91023 * 23 17 16 47 47 H 1.08999 * 109.47080 * 300.01226 * 24 14 13 48 48 H 1.09004 * 109.47101 * 60.01485 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6113 1.9794 0.8463 5 6 3.5427 1.4441 0.1131 6 1 4.1425 1.8906 -0.6661 7 6 4.1519 0.8753 1.2116 8 7 3.4215 0.3319 2.1607 9 14 6.0146 0.8779 1.3522 10 1 6.4563 2.1090 2.0553 11 1 6.4548 -0.3152 2.1192 12 1 6.6136 0.8416 -0.0062 13 7 1.6424 2.1024 -1.2508 14 6 1.4931 3.5510 -1.0573 15 6 0.4752 4.0972 -2.0607 16 6 0.3194 5.6058 -1.8585 17 6 1.6694 6.2912 -2.0748 18 6 2.1574 6.0200 -3.5006 19 6 1.1712 6.6384 -4.4952 20 8 1.0506 8.0385 -4.2361 21 6 0.5526 8.3508 -2.9335 22 6 1.5139 7.8014 -1.8761 23 6 2.6880 5.7452 -1.0735 24 6 2.8435 4.2363 -1.2755 25 1 -0.3634 0.5499 -0.8681 26 1 -0.3633 -1.0269 -0.0421 27 1 -0.3633 0.4768 0.9104 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8502 -0.0679 2.9337 31 1 0.7950 1.6976 -1.6197 32 1 1.1453 3.7481 -0.0433 33 1 -0.4865 3.6084 -1.9052 34 1 0.8232 3.9004 -3.0748 35 1 -0.0295 5.8023 -0.8446 36 1 -0.4053 5.9953 -2.5734 37 1 3.1424 6.4657 -3.6396 38 1 2.2165 4.9444 -3.6671 39 1 1.5362 6.4867 -5.5110 40 1 0.1967 6.1629 -4.3841 41 1 -0.4301 7.8980 -2.8019 42 1 0.4723 9.4324 -2.8248 43 1 1.1131 7.9986 -0.8818 44 1 2.4854 8.2844 -1.9807 45 1 3.6498 6.2337 -1.2305 46 1 2.3418 5.9422 -0.0590 47 1 3.5683 3.8468 -0.5606 48 1 3.1913 4.0393 -2.2896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358290264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -73.859095 kcal Electronic energy + Delta-G solvation = -24026.695276 eV Core-core repulsion = 20887.084301 eV Total energy + Delta-G solvation = -3139.610975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52403 -37.66819 -35.76462 -33.07177 -31.69332 -31.12364 -30.55919 -29.61754 -26.87823 -25.69339 -23.63598 -23.23403 -22.57845 -21.84475 -19.85128 -19.46131 -18.05371 -16.35791 -16.22839 -16.01965 -15.29606 -14.75992 -14.59829 -14.50455 -14.24136 -13.84921 -13.78655 -13.01340 -12.86510 -12.70211 -12.44507 -12.08773 -11.91343 -11.81860 -11.66281 -11.33080 -11.18878 -11.13164 -11.05096 -10.84279 -10.69512 -10.64390 -10.33651 -10.21828 -9.91273 -9.84120 -9.68665 -9.59018 -9.45148 -9.16209 -8.90177 -8.30966 -7.18408 -5.93765 -3.96500 3.32976 3.40004 3.44305 3.84978 4.46317 4.61690 4.70533 4.83645 5.02024 5.11506 5.18768 5.23072 5.31406 5.36769 5.46458 5.54452 5.55977 5.67195 5.76168 5.80847 5.89253 5.91704 5.96228 5.97833 6.05863 6.14139 6.15961 6.19191 6.23156 6.35698 6.40751 6.43163 6.49971 6.55207 6.72078 6.85047 6.96641 7.09424 7.14345 7.17230 7.25556 7.55056 7.81260 7.97017 8.38602 8.45239 8.81611 9.11102 9.67741 11.11713 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.004716 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.164645 B = 5935.844870 C = 6715.190629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.102 3.898 15 C -0.124 4.124 16 C -0.107 4.107 17 C -0.055 4.055 18 C -0.147 4.147 19 C 0.059 3.941 20 O -0.387 6.387 21 C 0.060 3.940 22 C -0.146 4.146 23 C -0.107 4.107 24 C -0.107 4.107 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.258 0.742 31 H 0.316 0.684 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 11.870 -8.599 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.145 4.145 17 C -0.055 4.055 18 C -0.185 4.185 19 C -0.017 4.017 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.183 4.183 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.018 11.944 -8.788 16.003 hybrid contribution 0.099 -0.276 1.015 1.056 sum -5.918 11.668 -7.773 15.218 Atomic orbital electron populations 1.21884 0.99738 0.99437 0.99656 1.21796 0.91109 1.00674 1.03012 1.19213 0.95391 0.89752 0.84443 0.98100 1.21254 0.91176 1.35603 1.04446 0.91804 1.24963 0.97897 0.95806 0.95973 1.69874 1.34658 1.39499 1.09763 0.86612 0.86155 0.77302 0.78015 1.20954 1.21456 1.19927 1.60745 1.36769 1.01341 1.32775 1.21343 0.94081 0.89521 0.95876 1.21831 0.98805 0.94775 1.00738 1.21623 0.96039 0.95605 1.01262 1.20507 0.96013 0.93611 0.95384 1.22322 0.99329 1.02425 0.94380 1.22639 0.98653 0.81448 0.99000 1.87884 1.86358 1.23929 1.32444 1.22585 0.96056 1.00123 0.82890 1.22247 1.00682 0.96100 0.99297 1.21609 0.97609 0.97287 0.97997 1.21628 0.98367 0.91857 1.02660 0.94631 0.94488 0.93980 0.94131 0.88333 0.93205 0.86568 0.94954 0.92915 0.91373 0.92126 0.92428 0.91411 0.89552 0.89325 0.93087 0.93162 0.89458 0.91076 0.91213 0.92477 0.92353 0.89778 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.78 37.16 0.36 -2.51 16 2 C -0.13 -2.97 5.34 -26.73 -0.14 -3.11 16 3 C 0.22 5.33 2.04 -68.86 -0.14 5.19 16 4 H 0.00 0.04 7.34 -51.93 -0.38 -0.34 16 5 C -0.49 -13.02 7.44 -34.44 -0.26 -13.28 16 6 H 0.06 1.74 6.88 -52.49 -0.36 1.38 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.37 11.30 55.43 0.63 -24.74 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.02 6.16 -100.95 -0.62 -14.64 16 14 C 0.10 1.83 2.50 -67.71 -0.17 1.66 16 15 C -0.12 -1.75 4.89 -26.72 -0.13 -1.88 16 16 C -0.11 -1.32 4.17 -26.75 -0.11 -1.43 16 17 C -0.06 -0.67 0.51 -154.46 -0.08 -0.75 16 18 C -0.15 -1.77 4.22 -26.61 -0.11 -1.88 16 19 C 0.06 0.65 6.57 37.21 0.24 0.90 16 20 O -0.39 -4.74 10.76 -35.23 -0.38 -5.12 16 21 C 0.06 0.62 6.57 37.21 0.24 0.86 16 22 C -0.15 -1.58 4.92 -26.62 -0.13 -1.71 16 23 C -0.11 -1.54 4.74 -26.76 -0.13 -1.67 16 24 C -0.11 -1.89 4.85 -26.72 -0.13 -2.02 16 25 H 0.03 0.61 6.35 -51.93 -0.33 0.28 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.32 5.99 5.98 -39.29 -0.23 5.75 16 32 H 0.03 0.65 7.34 -51.93 -0.38 0.27 16 33 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.07 0.95 6.37 -51.93 -0.33 0.62 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.64 5.01 -51.93 -0.26 0.38 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.11 4.85 -51.93 -0.25 0.85 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 41 H 0.05 0.49 6.60 -51.93 -0.34 0.15 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.78 6.11 -51.93 -0.32 1.46 16 48 H 0.06 1.05 6.52 -51.93 -0.34 0.71 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -27.77 340.83 -9.42 -37.19 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.39 Total: 6.10 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -0.77 Total: -20.26 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.00 Total: -39.39 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.77 -9.42 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358290264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.664 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds