Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46731 * 2 1 4 4 H 1.09003 * 109.47138 * 301.90446 * 3 2 1 5 5 C 1.53000 * 109.46907 * 181.90689 * 3 2 1 6 6 C 1.53002 * 109.47209 * 69.03912 * 5 3 2 7 7 C 1.54265 * 110.03294 * 288.11035 * 6 5 3 8 8 C 1.54889 * 104.19610 * 217.10434 * 7 6 5 9 9 C 1.54897 * 102.74934 * 37.93772 * 8 7 6 10 10 C 1.53875 * 110.03496 * 170.93867 * 6 5 3 11 11 C 1.50695 * 109.47004 * 61.91176 * 3 2 1 12 12 O 1.21282 * 120.00390 * 34.62346 * 11 3 2 13 13 N 1.34781 * 119.99556 * 214.62741 * 11 3 2 14 14 C 1.46498 * 120.00275 * 4.90349 * 13 11 3 15 15 C 1.46497 * 119.99717 * 184.90975 * 13 11 3 16 16 H 1.09001 * 109.47191 * 359.97438 * 15 13 11 17 17 C 1.53005 * 109.47219 * 119.99850 * 15 13 11 18 18 C 1.50706 * 109.47176 * 239.99918 * 15 13 11 19 19 H 1.08000 * 119.99572 * 359.97438 * 18 15 13 20 20 C 1.37875 * 120.00022 * 180.02562 * 18 15 13 21 21 N 1.31507 * 120.00165 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99875 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47079 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47129 * 119.99710 * 22 20 18 25 25 H 1.48495 * 109.47225 * 239.99705 * 22 20 18 26 26 H 1.08998 * 109.46698 * 184.88474 * 1 2 3 27 27 H 1.09001 * 109.46831 * 304.87759 * 1 2 3 28 28 H 1.08997 * 109.47316 * 64.87908 * 1 2 3 29 29 H 1.09000 * 109.47048 * 240.00516 * 2 1 3 30 30 H 1.08996 * 109.47408 * 120.00319 * 2 1 3 31 31 H 1.08996 * 109.47332 * 189.03846 * 5 3 2 32 32 H 1.09004 * 109.47486 * 309.04264 * 5 3 2 33 33 H 1.09002 * 110.01646 * 49.54965 * 6 5 3 34 34 H 1.08998 * 110.49054 * 335.77927 * 7 6 5 35 35 H 1.09004 * 110.49191 * 98.42686 * 7 6 5 36 36 H 1.09000 * 110.75712 * 279.62727 * 8 7 6 37 37 H 1.08995 * 110.76226 * 156.25495 * 8 7 6 38 38 H 1.09002 * 110.48637 * 203.37961 * 9 8 7 39 39 H 1.08998 * 110.47828 * 80.74047 * 9 8 7 40 40 H 1.08999 * 110.03445 * 238.57144 * 10 6 5 41 41 H 1.09001 * 110.02779 * 359.95861 * 10 6 5 42 42 H 1.09004 * 109.46717 * 84.78243 * 14 13 11 43 43 H 1.08998 * 109.47155 * 324.78910 * 14 13 11 44 44 H 1.08997 * 109.47207 * 204.78357 * 14 13 11 45 45 H 1.09006 * 109.46946 * 179.97438 * 17 15 13 46 46 H 1.08998 * 109.47008 * 299.99796 * 17 15 13 47 47 H 1.09001 * 109.47152 * 59.99837 * 17 15 13 48 48 H 0.97001 * 120.00411 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6489 1.9662 -0.8724 5 6 3.5692 1.4429 -0.0480 6 6 4.0366 0.9419 -1.4160 7 6 3.7844 -0.5751 -1.5377 8 6 5.0060 -1.1008 -2.3317 9 6 6.1716 -0.2504 -1.7682 10 6 5.5544 1.1484 -1.5626 11 6 1.5766 2.1391 1.2534 12 8 1.4871 1.5209 2.2930 13 7 1.2617 3.4491 1.2192 14 6 1.2660 4.1705 -0.0559 15 6 0.9151 4.1518 2.4570 16 1 0.9657 3.4571 3.2955 17 6 1.9007 5.2997 2.6850 18 6 -0.4826 4.7042 2.3467 19 1 -1.0553 4.5479 1.4445 20 6 -1.0299 5.4101 3.3971 21 7 -0.3323 5.6008 4.4955 22 14 -2.7622 6.0955 3.2599 23 1 -3.3290 5.7466 1.9323 24 1 -3.6112 5.5127 4.3298 25 1 -2.7234 7.5725 3.4084 26 1 -0.3632 -1.0239 0.0875 27 1 -0.3633 0.5877 0.8431 28 1 -0.3634 0.4363 -0.9304 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9376 2.4560 0.1132 32 1 3.9574 0.7868 0.7312 33 1 3.5093 1.4735 -2.2082 34 1 3.7442 -1.0356 -0.5506 35 1 2.8621 -0.7658 -2.0865 36 1 4.8787 -0.9222 -3.3994 37 1 5.1694 -2.1599 -2.1329 38 1 6.9914 -0.2040 -2.4851 39 1 6.5169 -0.6584 -0.8183 40 1 5.7637 1.7795 -2.4263 41 1 5.9578 1.6062 -0.6594 42 1 0.3075 4.0306 -0.5557 43 1 2.0653 3.7849 -0.6888 44 1 1.4283 5.2325 0.1280 45 1 1.6426 5.8227 3.6059 46 1 2.9117 4.9001 2.7649 47 1 1.8498 5.9942 1.8465 48 1 -0.7174 6.0970 5.2346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -63.586998 kcal Electronic energy + Delta-G solvation = -23636.515910 eV Core-core repulsion = 20497.350367 eV Total energy + Delta-G solvation = -3139.165543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80784 -38.29234 -35.48887 -34.45944 -32.73943 -31.10020 -29.50933 -28.82319 -27.34531 -26.02441 -25.16938 -23.56498 -22.54057 -20.70306 -19.96333 -19.67117 -17.92818 -16.87925 -16.27071 -15.93814 -15.31382 -14.98734 -14.58176 -14.25302 -13.84868 -13.61110 -13.38996 -13.23557 -12.86015 -12.67433 -12.52279 -12.02786 -11.75784 -11.58261 -11.52628 -11.43377 -11.28208 -11.21259 -11.03821 -10.81672 -10.78626 -10.75422 -10.68224 -10.49611 -10.37216 -10.23671 -10.18829 -10.16384 -10.12705 -9.11420 -8.69111 -8.38727 -7.50047 -6.04070 -4.11534 3.27362 3.35205 3.38244 3.48734 4.03451 4.42608 4.48839 4.52952 4.64681 4.98675 5.10160 5.20734 5.26897 5.30339 5.39148 5.48845 5.50140 5.55290 5.59549 5.66525 5.70280 5.77905 5.81288 5.82883 5.90661 5.96583 6.06603 6.09158 6.13248 6.16288 6.21488 6.26462 6.31176 6.36671 6.43568 6.56976 6.64645 6.78999 6.85771 7.09728 7.51063 7.57716 7.76304 8.05898 8.24981 8.62451 8.88977 9.17380 9.55285 11.01219 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.004070 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.887651 B = 6878.038152 C = 7292.799846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.109 4.109 4 H 0.084 0.916 5 C -0.099 4.099 6 C -0.089 4.089 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.553 6.553 13 N -0.595 5.595 14 C 0.088 3.912 15 C 0.257 3.743 16 H 0.062 0.938 17 C -0.147 4.147 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.010 0.990 47 H 0.029 0.971 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -8.974 -14.638 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.130 4.130 4 H 0.102 0.898 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.160 4.160 8 C -0.166 4.166 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.297 3.703 12 O -0.432 6.432 13 N -0.326 5.326 14 C -0.057 4.057 15 C 0.156 3.844 16 H 0.080 0.920 17 C -0.205 4.205 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.029 0.971 47 H 0.048 0.952 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.655 -9.166 -13.887 19.238 hybrid contribution -1.057 0.677 -0.070 1.257 sum 8.598 -8.489 -13.958 18.461 Atomic orbital electron populations 1.21807 0.96082 1.01412 1.01937 1.21892 0.96021 0.94960 1.03110 1.21458 0.96593 0.97533 0.97431 0.89766 1.21612 0.93337 1.01762 0.96947 1.21792 0.95551 0.96112 0.97261 1.22771 0.97359 0.95273 1.00603 1.22558 0.95392 0.99097 0.99558 1.22352 0.97583 0.95596 1.00701 1.22225 0.94992 0.97049 1.01688 1.20380 0.77745 0.82237 0.89917 1.90624 1.54523 1.64929 1.33099 1.48233 1.65928 1.08848 1.09599 1.21545 0.99809 0.98388 0.85908 1.18909 0.93291 0.90453 0.81703 0.92036 1.22100 0.95699 0.99688 1.03021 1.21372 0.98941 1.34248 1.01491 0.92324 1.24895 0.97830 0.96021 0.95109 1.69886 1.36806 1.41092 1.04948 0.86462 0.84409 0.78540 0.78113 1.19841 1.20935 1.20976 0.93114 0.91937 0.93386 0.89983 0.91197 0.91686 0.91165 0.90995 0.90832 0.91099 0.91791 0.91887 0.92121 0.91749 0.92015 0.91610 0.93664 0.93030 0.90792 0.88857 0.97087 0.95166 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.76 37.16 0.36 -1.95 16 2 C -0.12 -1.72 4.12 -26.73 -0.11 -1.83 16 3 C -0.11 -1.64 1.45 -91.77 -0.13 -1.77 16 4 H 0.08 1.15 6.18 -51.93 -0.32 0.83 16 5 C -0.10 -1.29 3.98 -26.73 -0.11 -1.39 16 6 C -0.09 -0.90 2.90 -89.50 -0.26 -1.16 16 7 C -0.12 -1.15 4.31 -25.07 -0.11 -1.26 16 8 C -0.13 -1.05 6.91 -24.73 -0.17 -1.22 16 9 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 10 C -0.12 -1.13 6.45 -25.61 -0.17 -1.30 16 11 C 0.51 10.62 5.57 -10.99 -0.06 10.56 16 12 O -0.55 -13.82 15.17 5.56 0.08 -13.73 16 13 N -0.60 -12.88 2.75 -175.26 -0.48 -13.36 16 14 C 0.09 1.51 9.02 59.85 0.54 2.05 16 15 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16 16 H 0.06 1.86 6.91 -51.93 -0.36 1.51 16 17 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 18 C -0.52 -14.36 8.37 -34.44 -0.29 -14.65 16 19 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.17 6.84 -51.93 -0.36 0.81 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.92 3.91 -51.93 -0.20 0.71 16 30 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 31 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.07 0.75 6.87 -51.93 -0.36 0.39 16 35 H 0.07 0.63 6.56 -51.93 -0.34 0.29 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 44 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 45 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -30.80 358.27 -8.66 -39.46 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.66 Total: 0.98 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.61 Total: -10.21 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.14 Total: -38.23 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.80 -8.66 -39.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.123 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds