Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46747 * 2 1 4 4 H 1.09008 * 109.47437 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47634 * 300.03439 * 3 2 1 6 6 C 1.52997 * 109.47351 * 295.88683 * 5 3 2 7 7 C 1.54269 * 110.03189 * 292.40415 * 6 5 3 8 8 C 1.54892 * 104.19404 * 217.10579 * 7 6 5 9 9 C 1.54895 * 102.75119 * 37.93800 * 8 7 6 10 10 C 1.53869 * 110.03520 * 175.23449 * 6 5 3 11 11 C 1.50701 * 109.47311 * 60.03721 * 3 2 1 12 12 O 1.21275 * 120.00281 * 261.16678 * 11 3 2 13 13 N 1.34780 * 119.99943 * 81.16415 * 11 3 2 14 14 C 1.46501 * 119.99923 * 184.94469 * 13 11 3 15 15 C 1.46497 * 119.99891 * 4.94218 * 13 11 3 16 16 H 1.08999 * 109.47589 * 354.44879 * 15 13 11 17 17 C 1.53006 * 109.47163 * 114.44908 * 15 13 11 18 18 C 1.50703 * 109.47320 * 234.44782 * 15 13 11 19 19 H 1.07997 * 119.99936 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00423 * 180.02562 * 18 15 13 21 21 N 1.31508 * 120.00345 * 180.02562 * 20 18 15 22 22 Si 1.86803 * 119.99930 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.46918 * 89.99909 * 22 20 18 24 24 H 1.48493 * 109.47142 * 210.00266 * 22 20 18 25 25 H 1.48507 * 109.46769 * 330.00366 * 22 20 18 26 26 H 1.09005 * 109.47021 * 185.29039 * 1 2 3 27 27 H 1.09002 * 109.47416 * 305.28850 * 1 2 3 28 28 H 1.08998 * 109.47727 * 65.29432 * 1 2 3 29 29 H 1.08995 * 109.46994 * 240.00676 * 2 1 3 30 30 H 1.08990 * 109.47184 * 120.00181 * 2 1 3 31 31 H 1.09007 * 109.47310 * 175.88485 * 5 3 2 32 32 H 1.08999 * 109.47102 * 55.89048 * 5 3 2 33 33 H 1.09008 * 110.05284 * 53.81792 * 6 5 3 34 34 H 1.09003 * 110.48614 * 335.77635 * 7 6 5 35 35 H 1.08990 * 110.48710 * 98.42689 * 7 6 5 36 36 H 1.09007 * 110.75052 * 279.62665 * 8 7 6 37 37 H 1.08991 * 110.91737 * 156.33159 * 8 7 6 38 38 H 1.08996 * 110.48668 * 203.38274 * 9 8 7 39 39 H 1.08999 * 110.59294 * 80.79266 * 9 8 7 40 40 H 1.08998 * 110.03291 * 238.57497 * 10 6 5 41 41 H 1.09005 * 110.03440 * 359.95207 * 10 6 5 42 42 H 1.08999 * 109.46970 * 93.85013 * 14 13 11 43 43 H 1.09004 * 109.46811 * 213.84858 * 14 13 11 44 44 H 1.08998 * 109.47066 * 333.84687 * 14 13 11 45 45 H 1.08997 * 109.47156 * 179.97438 * 17 15 13 46 46 H 1.08995 * 109.46442 * 299.99919 * 17 15 13 47 47 H 1.08999 * 109.46892 * 59.99544 * 17 15 13 48 48 H 0.97001 * 120.00125 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0005 5 6 1.5292 2.1641 -1.2488 6 6 2.1212 1.5054 -2.4964 7 6 3.6428 1.7532 -2.5532 8 6 3.9384 1.9572 -4.0599 9 6 2.7039 2.7569 -4.5453 10 6 1.5243 2.1435 -3.7629 11 6 1.5382 2.1526 1.2309 12 8 0.5647 2.8725 1.1614 13 7 2.1716 1.9878 2.4092 14 6 1.6224 2.5900 3.6265 15 6 3.4091 1.2063 2.4725 16 1 3.6070 0.7595 1.4982 17 6 4.5718 2.1227 2.8589 18 6 3.2634 0.1174 3.5042 19 1 2.3414 0.0178 4.0576 20 6 4.3075 -0.7509 3.7423 21 7 4.1802 -1.7014 4.6422 22 14 5.9026 -0.5782 2.7855 23 1 6.8209 0.3330 3.5146 24 1 6.5399 -1.9117 2.6409 25 1 5.6148 -0.0186 1.4404 26 1 -0.3633 -1.0233 0.0948 27 1 -0.3634 0.5937 0.8388 28 1 -0.3634 0.4295 -0.9335 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8310 3.2109 -1.2126 32 1 0.4417 2.1007 -1.2858 33 1 1.9174 0.4346 -2.4861 34 1 3.9049 2.6480 -1.9886 35 1 4.1847 0.8879 -2.1718 36 1 4.0038 0.9981 -4.5739 37 1 4.8525 2.5334 -4.2026 38 1 2.5607 2.6239 -5.6176 39 1 2.8130 3.8143 -4.3041 40 1 1.0308 1.3825 -4.3673 41 1 0.8121 2.9219 -3.4888 42 1 0.9928 1.8630 4.1394 43 1 2.4388 2.8909 4.2831 44 1 1.0272 3.4642 3.3628 45 1 5.4924 1.5411 2.9065 46 1 4.6771 2.9101 2.1127 47 1 4.3739 2.5695 3.8332 48 1 4.9147 -2.3125 4.8094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = -62.657304 kcal Electronic energy + Delta-G solvation = -24136.699433 eV Core-core repulsion = 20997.574205 eV Total energy + Delta-G solvation = -3139.125229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90223 -38.23899 -35.77448 -34.82798 -32.56472 -30.45868 -30.11595 -28.76596 -28.01617 -25.91016 -25.23521 -23.79282 -22.02993 -20.99425 -20.61579 -19.11026 -17.69229 -17.09427 -16.16197 -15.95517 -15.38136 -15.11069 -14.95042 -14.46873 -14.11944 -13.50940 -13.34070 -13.27505 -12.87968 -12.62169 -12.55132 -12.32755 -11.91252 -11.86927 -11.74342 -11.34659 -11.31920 -11.23069 -11.13252 -11.06565 -10.85306 -10.72509 -10.64032 -10.59278 -10.37095 -10.20382 -10.16162 -9.96731 -9.75623 -9.39763 -8.91648 -8.71570 -7.71163 -6.23722 -4.25519 3.13811 3.21864 3.27244 3.33496 3.87545 4.23051 4.59174 4.65353 4.73708 5.06646 5.09396 5.19896 5.30468 5.44381 5.47474 5.57375 5.60533 5.62781 5.66425 5.73899 5.83647 5.86253 5.94320 6.00507 6.07344 6.08657 6.10049 6.15412 6.18727 6.24675 6.26196 6.29094 6.33049 6.36266 6.39124 6.52895 6.54980 6.55640 6.61932 6.69075 6.81428 6.90664 7.28967 7.56113 8.09963 8.49895 8.79284 8.93688 9.36334 10.88879 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.005969 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.112700 B = 4689.658454 C = 5425.975903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.107 4.107 4 H 0.090 0.910 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.123 4.123 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.518 3.482 12 O -0.570 6.570 13 N -0.587 5.587 14 C 0.096 3.904 15 C 0.224 3.776 16 H 0.054 0.946 17 C -0.166 4.166 18 C -0.528 4.528 19 H 0.081 0.919 20 C 0.077 3.923 21 N -0.890 5.890 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.265 1.265 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.033 0.967 47 H 0.058 0.942 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 5.925 -14.250 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.128 4.128 4 H 0.108 0.892 5 C -0.129 4.129 6 C -0.113 4.113 7 C -0.161 4.161 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.158 4.158 11 C 0.306 3.694 12 O -0.451 6.451 13 N -0.316 5.316 14 C -0.047 4.047 15 C 0.122 3.878 16 H 0.072 0.928 17 C -0.224 4.224 18 C -0.567 4.567 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.711 3.289 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.190 1.190 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.497 6.134 -14.149 15.494 hybrid contribution 1.149 -0.117 -0.145 1.164 sum -0.348 6.017 -14.294 15.513 Atomic orbital electron populations 1.21801 0.95762 1.01162 1.02003 1.21513 0.96382 0.94164 1.03415 1.21359 1.01755 0.96530 0.93127 0.89188 1.21553 1.01185 0.98570 0.91618 1.21862 0.94799 1.00342 0.94253 1.22495 0.95767 1.01844 0.95988 1.22491 0.97615 0.99888 0.96278 1.22349 0.95165 0.99534 0.99134 1.22203 0.97689 0.99850 0.96040 1.20480 0.83148 0.80984 0.84786 1.90580 1.28152 1.40283 1.86088 1.47890 1.25821 1.51056 1.06883 1.21375 0.98777 0.97504 0.87026 1.19447 0.79886 0.89505 0.98973 0.92819 1.22512 0.99503 0.99358 1.01042 1.21136 1.02453 1.11915 1.21159 0.90065 1.24883 0.98249 0.94803 0.94679 1.69869 1.32698 1.17612 1.32566 0.86970 0.84261 0.76546 0.81156 1.20362 1.22088 1.19010 0.93112 0.92300 0.92900 0.91395 0.89757 0.92095 0.90776 0.90578 0.91485 0.91592 0.91751 0.91963 0.92195 0.91863 0.92143 0.91705 0.93141 0.91632 0.92003 0.93147 0.94793 0.92305 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.25 37.16 0.34 -2.00 16 2 C -0.12 -1.90 5.26 -26.74 -0.14 -2.04 16 3 C -0.11 -1.78 1.56 -91.77 -0.14 -1.92 16 4 H 0.09 1.51 5.67 -51.92 -0.29 1.22 16 5 C -0.09 -1.32 2.99 -26.73 -0.08 -1.40 16 6 C -0.09 -1.13 2.79 -89.50 -0.25 -1.38 16 7 C -0.12 -1.45 5.46 -25.07 -0.14 -1.59 16 8 C -0.13 -1.25 6.91 -24.73 -0.17 -1.42 16 9 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 10 C -0.12 -1.26 6.46 -25.62 -0.17 -1.43 16 11 C 0.52 10.27 5.70 -10.98 -0.06 10.20 16 12 O -0.57 -12.32 15.11 5.56 0.08 -12.24 16 13 N -0.59 -12.11 2.75 -175.26 -0.48 -12.59 16 14 C 0.10 1.85 9.60 59.85 0.57 2.43 16 15 C 0.22 4.89 1.71 -69.08 -0.12 4.77 16 16 H 0.05 1.16 3.98 -51.93 -0.21 0.95 16 17 C -0.17 -3.37 8.74 37.16 0.32 -3.04 16 18 C -0.53 -13.62 8.89 -34.44 -0.31 -13.93 16 19 H 0.08 2.33 7.48 -52.49 -0.39 1.94 16 20 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 21 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 22 Si 0.88 20.14 24.37 -169.99 -4.14 15.99 16 23 H -0.28 -6.22 6.87 56.52 0.39 -5.83 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -5.64 6.53 56.52 0.37 -5.28 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.06 6.67 -51.93 -0.35 0.72 16 28 H 0.05 0.74 6.63 -51.93 -0.34 0.40 16 29 H 0.07 0.95 6.42 -51.93 -0.33 0.62 16 30 H 0.08 1.60 7.41 -51.93 -0.38 1.22 16 31 H 0.06 0.91 8.01 -51.92 -0.42 0.50 16 32 H 0.07 1.12 6.22 -51.93 -0.32 0.79 16 33 H 0.08 0.91 6.31 -51.92 -0.33 0.58 16 34 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.69 7.67 -51.93 -0.40 0.30 16 42 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 43 H 0.06 1.20 6.74 -51.93 -0.35 0.85 16 44 H 0.06 1.13 7.25 -51.93 -0.38 0.76 16 45 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 1.16 6.89 -51.93 -0.36 0.81 16 48 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -28.47 349.95 -7.49 -35.96 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.40 Total: 4.54 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.60 Total: -12.14 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.29 Total: -37.39 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.14 Total: 15.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.47 -7.49 -35.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.698 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds