Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47112 * 2 1 4 4 H 1.08994 * 109.47135 * 181.22169 * 3 2 1 5 5 C 1.53001 * 109.46912 * 301.22092 * 3 2 1 6 6 C 1.52998 * 109.47051 * 295.01860 * 5 3 2 7 7 C 1.54265 * 110.03474 * 291.73459 * 6 5 3 8 8 C 1.54897 * 104.19736 * 217.10582 * 7 6 5 9 9 C 1.54889 * 102.74908 * 37.93835 * 8 7 6 10 10 C 1.53880 * 110.03470 * 174.56580 * 6 5 3 11 11 C 1.50701 * 109.47172 * 61.21477 * 3 2 1 12 12 O 1.21274 * 120.00503 * 250.50507 * 11 3 2 13 13 N 1.34782 * 119.99489 * 70.51011 * 11 3 2 14 14 C 1.46506 * 119.99581 * 184.53156 * 13 11 3 15 15 C 1.46496 * 120.00268 * 4.52613 * 13 11 3 16 16 H 1.09003 * 109.47008 * 354.38687 * 15 13 11 17 17 C 1.53000 * 109.47306 * 234.38695 * 15 13 11 18 18 C 1.50696 * 109.47106 * 114.38448 * 15 13 11 19 19 H 1.08004 * 120.00199 * 0.02562 * 18 15 13 20 20 C 1.37879 * 120.00212 * 180.02562 * 18 15 13 21 21 N 1.31515 * 119.99673 * 0.02562 * 20 18 15 22 22 Si 1.86792 * 120.00119 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47517 * 60.00050 * 22 20 18 24 24 H 1.48503 * 109.47205 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47193 * 299.99874 * 22 20 18 26 26 H 1.08996 * 109.47424 * 305.69179 * 1 2 3 27 27 H 1.08999 * 109.47453 * 65.69564 * 1 2 3 28 28 H 1.08998 * 109.47093 * 185.69129 * 1 2 3 29 29 H 1.09002 * 109.47183 * 240.00005 * 2 1 3 30 30 H 1.08998 * 109.46765 * 120.00083 * 2 1 3 31 31 H 1.09001 * 109.47324 * 175.02483 * 5 3 2 32 32 H 1.08999 * 109.47499 * 55.01652 * 5 3 2 33 33 H 1.09003 * 110.01981 * 53.17391 * 6 5 3 34 34 H 1.08998 * 110.48589 * 335.77958 * 7 6 5 35 35 H 1.08993 * 110.49120 * 98.42640 * 7 6 5 36 36 H 1.09000 * 110.75123 * 279.62639 * 8 7 6 37 37 H 1.08999 * 110.91425 * 156.32689 * 8 7 6 38 38 H 1.08991 * 110.49016 * 203.38242 * 9 8 7 39 39 H 1.08998 * 110.48821 * 80.73430 * 9 8 7 40 40 H 1.09004 * 110.02833 * 238.57450 * 10 6 5 41 41 H 1.09000 * 110.03008 * 359.94767 * 10 6 5 42 42 H 1.08995 * 109.46972 * 93.72790 * 14 13 11 43 43 H 1.09003 * 109.46544 * 213.72350 * 14 13 11 44 44 H 1.08996 * 109.46926 * 333.72099 * 14 13 11 45 45 H 1.09002 * 109.47183 * 60.00174 * 17 15 13 46 46 H 1.08997 * 109.47248 * 180.02562 * 17 15 13 47 47 H 1.09003 * 109.47081 * 299.99948 * 17 15 13 48 48 H 0.97006 * 119.99456 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0219 5 6 1.5050 2.1725 -1.2336 6 6 2.0895 1.5361 -2.4962 7 6 3.6041 1.8176 -2.5774 8 6 3.8690 2.0389 -4.0874 9 6 2.6092 2.8149 -4.5453 10 6 1.4569 2.1702 -3.7475 11 6 1.5624 2.1442 1.2452 12 8 0.7153 3.0085 1.1673 13 7 2.0768 1.8111 2.4457 14 6 1.5432 2.4213 3.6660 15 6 3.1693 0.8388 2.5302 16 1 3.3630 0.4230 1.5413 17 6 2.7771 -0.2872 3.4889 18 6 4.4119 1.5224 3.0398 19 1 4.3898 2.5758 3.2774 20 6 5.5769 0.8032 3.2027 21 7 5.6039 -0.4793 2.9129 22 14 7.1168 1.6505 3.8351 23 1 6.8529 2.2159 5.1827 24 1 8.2244 0.6649 3.9207 25 1 7.4974 2.7441 2.9053 26 1 -0.3634 0.5995 0.8346 27 1 -0.3634 0.4230 -0.9366 28 1 -0.3633 -1.0226 0.1019 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7946 3.2224 -1.1886 32 1 0.4180 2.0961 -1.2581 33 1 1.9086 0.4612 -2.4903 34 1 3.8564 2.7137 -2.0105 35 1 4.1714 0.9616 -2.2120 36 1 3.9464 1.0853 -4.6097 37 1 4.7677 2.6361 -4.2413 38 1 2.4503 2.6866 -5.6159 39 1 2.7007 3.8720 -4.2962 40 1 0.9697 1.4028 -4.3491 41 1 0.7328 2.9306 -3.4552 42 1 0.7714 1.7770 4.0869 43 1 2.3474 2.5463 4.3912 44 1 1.1142 3.3946 3.4279 45 1 1.8783 -0.7817 3.1203 46 1 3.5901 -1.0104 3.5522 47 1 2.5834 0.1286 4.4778 48 1 6.4236 -0.9852 3.0272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -72.524256 kcal Electronic energy + Delta-G solvation = -24061.869631 eV Core-core repulsion = 20922.316540 eV Total energy + Delta-G solvation = -3139.553092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.76387 -38.09552 -35.52233 -34.79675 -32.62210 -30.37662 -29.13870 -28.63968 -27.89325 -25.81807 -25.28168 -23.72715 -21.85731 -20.84525 -20.48989 -18.99794 -17.67897 -16.63381 -16.21640 -15.76658 -15.11610 -14.97808 -14.78769 -14.27277 -14.20189 -13.41741 -13.21629 -13.08281 -12.77154 -12.50071 -12.30727 -11.94849 -11.71383 -11.66131 -11.33458 -11.18895 -11.04364 -11.02185 -10.93838 -10.90993 -10.82753 -10.65573 -10.55229 -10.52052 -10.29997 -10.24415 -10.12998 -10.02395 -9.85900 -9.32023 -8.81065 -8.50822 -7.56379 -6.16873 -4.25116 3.23445 3.28464 3.31064 3.50245 4.04828 4.33519 4.71348 4.77738 4.86753 5.13716 5.23363 5.29181 5.38747 5.54566 5.56703 5.67315 5.67662 5.74032 5.79089 5.83667 5.94702 5.96195 6.04115 6.13050 6.17033 6.19926 6.24893 6.25576 6.33382 6.37364 6.43412 6.46127 6.50400 6.57369 6.58119 6.63655 6.72150 6.73997 6.85061 6.93377 7.25211 7.44476 7.69187 7.89769 8.14517 8.50216 8.78820 9.10696 9.43257 10.87295 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.005868 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.227620 B = 4770.360754 C = 5767.084694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.105 4.105 4 H 0.100 0.900 5 C -0.090 4.090 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.517 3.483 12 O -0.579 6.579 13 N -0.593 5.593 14 C 0.092 3.908 15 C 0.251 3.749 16 H 0.060 0.940 17 C -0.150 4.150 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.013 0.987 46 H 0.094 0.906 47 H 0.032 0.968 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 0.534 -9.781 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.126 4.126 4 H 0.118 0.882 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.158 4.158 11 C 0.306 3.694 12 O -0.461 6.461 13 N -0.323 5.323 14 C -0.052 4.052 15 C 0.151 3.849 16 H 0.078 0.922 17 C -0.209 4.209 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.112 0.888 47 H 0.051 0.949 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.680 0.799 -9.780 11.338 hybrid contribution 1.040 0.338 0.580 1.237 sum -4.640 1.137 -9.200 10.367 Atomic orbital electron populations 1.21821 0.96109 1.00927 1.01955 1.21601 0.95886 0.94851 1.03202 1.21296 1.02553 0.95790 0.92920 0.88207 1.21527 1.00566 0.99010 0.91638 1.21850 0.94957 1.00128 0.94215 1.22484 0.95665 1.02103 0.95732 1.22493 0.97452 0.99835 0.96498 1.22349 0.95244 0.99598 0.98995 1.22208 0.97749 0.99674 0.96147 1.20490 0.81285 0.82463 0.85179 1.90562 1.34673 1.33734 1.87091 1.48230 1.35932 1.43091 1.05020 1.21375 0.98452 0.97490 0.87835 1.19121 0.82845 0.85395 0.97569 0.92227 1.22113 0.99671 1.00491 0.98582 1.21357 0.94392 0.96023 1.45067 0.92232 1.24863 0.98739 0.94831 0.95059 1.69846 1.27976 1.06712 1.48107 0.86580 0.82250 0.79252 0.79519 1.20208 1.21145 1.20193 0.92720 0.92669 0.93218 0.91323 0.90339 0.91844 0.91301 0.90809 0.91318 0.91402 0.91856 0.91969 0.92291 0.91861 0.92282 0.91785 0.94329 0.91050 0.92058 0.96816 0.88797 0.94909 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.23 37.16 0.34 -1.92 16 2 C -0.12 -1.90 5.07 -26.73 -0.14 -2.03 16 3 C -0.10 -1.85 1.56 -91.77 -0.14 -2.00 16 4 H 0.10 1.91 6.35 -51.93 -0.33 1.58 16 5 C -0.09 -1.39 2.87 -26.73 -0.08 -1.47 16 6 C -0.09 -1.21 2.80 -89.50 -0.25 -1.46 16 7 C -0.12 -1.62 5.48 -25.07 -0.14 -1.76 16 8 C -0.13 -1.41 6.91 -24.73 -0.17 -1.58 16 9 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 10 C -0.12 -1.37 6.46 -25.61 -0.17 -1.54 16 11 C 0.52 10.84 5.65 -10.98 -0.06 10.78 16 12 O -0.58 -13.19 15.51 5.56 0.09 -13.10 16 13 N -0.59 -12.77 2.75 -175.26 -0.48 -13.26 16 14 C 0.09 1.82 9.37 59.85 0.56 2.38 16 15 C 0.25 5.80 1.72 -69.09 -0.12 5.68 16 16 H 0.06 1.42 4.51 -51.93 -0.23 1.18 16 17 C -0.15 -3.35 8.68 37.16 0.32 -3.03 16 18 C -0.53 -13.54 8.09 -34.44 -0.28 -13.82 16 19 H 0.06 1.56 7.67 -52.48 -0.40 1.16 16 20 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -23.24 11.32 55.43 0.63 -22.61 16 22 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.05 0.93 7.04 -51.93 -0.37 0.57 16 27 H 0.05 0.76 6.62 -51.93 -0.34 0.41 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.98 6.49 -51.93 -0.34 0.64 16 30 H 0.08 1.41 5.54 -51.93 -0.29 1.13 16 31 H 0.06 1.07 7.96 -51.93 -0.41 0.65 16 32 H 0.07 1.09 6.25 -51.93 -0.32 0.76 16 33 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 34 H 0.07 0.99 7.75 -51.93 -0.40 0.58 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.41 7.41 -51.93 -0.38 1.03 16 44 H 0.06 1.20 7.26 -51.93 -0.38 0.82 16 45 H 0.01 0.27 7.68 -51.93 -0.40 -0.13 16 46 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 47 H 0.03 0.71 7.55 -51.93 -0.39 0.32 16 48 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -27.10 356.05 -8.56 -35.66 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.55 Total: 4.31 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.58 Total: -11.62 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.15 Total: -35.86 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.10 -8.56 -35.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.868 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds