Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46984 * 2 1 4 4 H 1.08995 * 109.47338 * 301.84578 * 3 2 1 5 5 C 1.53004 * 109.47022 * 181.84034 * 3 2 1 6 6 C 1.53004 * 109.46682 * 69.04006 * 5 3 2 7 7 C 1.54265 * 110.03067 * 288.12525 * 6 5 3 8 8 C 1.54889 * 104.19880 * 217.11100 * 7 6 5 9 9 C 1.54888 * 102.74896 * 37.94144 * 8 7 6 10 10 C 1.53873 * 110.02985 * 170.96197 * 6 5 3 11 11 C 1.50699 * 109.46693 * 61.84409 * 3 2 1 12 12 O 1.21277 * 120.00467 * 34.88569 * 11 3 2 13 13 N 1.34784 * 119.99692 * 214.87917 * 11 3 2 14 14 C 1.46493 * 120.00108 * 354.66770 * 13 11 3 15 15 C 1.46500 * 119.99456 * 174.93843 * 13 11 3 16 16 H 1.09000 * 109.47496 * 0.02562 * 15 13 11 17 17 C 1.52994 * 109.47145 * 239.99979 * 15 13 11 18 18 C 1.50711 * 109.46890 * 120.00425 * 15 13 11 19 19 H 1.07997 * 119.99436 * 0.02562 * 18 15 13 20 20 C 1.37871 * 120.00147 * 179.97438 * 18 15 13 21 21 N 1.31520 * 120.00075 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99949 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47085 * 90.00334 * 22 20 18 24 24 H 1.48500 * 109.47026 * 210.00069 * 22 20 18 25 25 H 1.48494 * 109.47491 * 330.00052 * 22 20 18 26 26 H 1.09003 * 109.47154 * 304.86895 * 1 2 3 27 27 H 1.08999 * 109.47356 * 64.87232 * 1 2 3 28 28 H 1.09001 * 109.46871 * 184.87276 * 1 2 3 29 29 H 1.09006 * 109.46741 * 240.00451 * 2 1 3 30 30 H 1.08991 * 109.47019 * 120.00496 * 2 1 3 31 31 H 1.09004 * 109.46782 * 189.03176 * 5 3 2 32 32 H 1.08996 * 109.47268 * 309.03691 * 5 3 2 33 33 H 1.08999 * 110.02035 * 49.57061 * 6 5 3 34 34 H 1.09004 * 110.48935 * 335.79065 * 7 6 5 35 35 H 1.09000 * 110.48533 * 98.42647 * 7 6 5 36 36 H 1.09006 * 110.75172 * 279.62901 * 8 7 6 37 37 H 1.09001 * 110.91508 * 156.33331 * 8 7 6 38 38 H 1.08994 * 110.48552 * 203.38596 * 9 8 7 39 39 H 1.08995 * 110.48679 * 80.73516 * 9 8 7 40 40 H 1.08995 * 110.03042 * 238.56752 * 10 6 5 41 41 H 1.09000 * 110.03432 * 359.95142 * 10 6 5 42 42 H 1.08999 * 109.47259 * 94.34840 * 14 13 11 43 43 H 1.09002 * 109.46992 * 214.34778 * 14 13 11 44 44 H 1.08996 * 109.47282 * 334.34814 * 14 13 11 45 45 H 1.09006 * 109.47280 * 180.02562 * 17 15 13 46 46 H 1.09000 * 109.47215 * 300.00529 * 17 15 13 47 47 H 1.08997 * 109.47197 * 60.00469 * 17 15 13 48 48 H 0.96997 * 120.00270 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6499 1.9658 -0.8729 5 6 3.5693 1.4428 -0.0463 6 6 4.0381 0.9413 -1.4137 7 6 3.7855 -0.5757 -1.5352 8 6 5.0079 -1.1021 -2.3275 9 6 6.1731 -0.2520 -1.7629 10 6 5.5561 1.1471 -1.5585 11 6 1.5752 2.1395 1.2527 12 8 1.4891 1.5228 2.2934 13 7 1.2555 3.4483 1.2165 14 6 1.4701 4.2211 -0.0093 15 6 0.6988 4.0994 2.4050 16 1 0.6173 3.3724 3.2130 17 6 -0.6878 4.6574 2.0785 18 6 1.6054 5.2250 2.8321 19 1 2.5058 5.4346 2.2738 20 6 1.2848 5.9878 3.9349 21 7 0.1880 5.7329 4.6145 22 14 2.4089 7.3825 4.4648 23 1 1.9949 8.6369 3.7863 24 1 2.3158 7.5616 5.9360 25 1 3.8095 7.0578 4.0933 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9304 28 1 -0.3633 -1.0240 0.0873 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9375 2.4560 0.1148 32 1 3.9565 0.7871 0.7335 33 1 3.5119 1.4728 -2.2066 34 1 3.7439 -1.0359 -0.5479 35 1 2.8638 -0.7662 -2.0849 36 1 4.8819 -0.9239 -3.3955 37 1 5.1721 -2.1616 -2.1309 38 1 6.9936 -0.2062 -2.4788 39 1 6.5171 -0.6598 -0.8124 40 1 5.7666 1.7778 -2.4221 41 1 5.9587 1.6050 -0.6550 42 1 0.5506 4.2369 -0.5946 43 1 1.7537 5.2414 0.2493 44 1 2.2655 3.7603 -0.5949 45 1 -1.1018 5.1422 2.9627 46 1 -0.6059 5.3845 1.2706 47 1 -1.3435 3.8434 1.7696 48 1 -0.0378 6.2697 5.3902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = -64.317764 kcal Electronic energy + Delta-G solvation = -23658.417045 eV Core-core repulsion = 20519.219813 eV Total energy + Delta-G solvation = -3139.197232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81073 -38.27665 -35.47898 -34.46469 -32.74109 -31.11628 -29.50314 -28.80934 -27.33000 -25.98477 -25.19246 -23.56599 -22.55512 -20.69122 -19.94814 -19.66597 -17.94877 -16.86714 -16.35759 -15.86373 -15.30746 -14.98752 -14.46665 -14.31600 -13.84995 -13.64326 -13.38489 -13.21624 -12.81715 -12.70981 -12.42305 -12.03881 -11.76174 -11.63196 -11.54074 -11.40883 -11.29862 -11.19107 -11.04653 -10.81571 -10.76990 -10.73517 -10.66462 -10.47815 -10.41848 -10.23415 -10.20806 -10.18296 -10.11639 -9.12561 -8.68898 -8.38555 -7.49677 -6.04188 -4.11895 3.27491 3.34597 3.37292 3.48959 4.04682 4.41661 4.50627 4.54726 4.65998 4.98324 5.10283 5.21785 5.26918 5.31275 5.39605 5.48340 5.51308 5.56454 5.60420 5.67222 5.69202 5.78505 5.80954 5.82841 5.90999 5.98008 6.06008 6.08470 6.12462 6.16595 6.23048 6.27299 6.32503 6.41853 6.45911 6.54226 6.59013 6.78903 6.87726 7.11080 7.50049 7.59001 7.76089 8.06202 8.25000 8.62493 8.88035 9.17495 9.54726 11.01075 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.004508 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.565897 B = 6210.286459 C = 7053.124813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.107 4.107 4 H 0.083 0.917 5 C -0.100 4.100 6 C -0.088 4.088 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.553 6.553 13 N -0.595 5.595 14 C 0.084 3.916 15 C 0.257 3.743 16 H 0.062 0.938 17 C -0.145 4.145 18 C -0.523 4.523 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.028 0.972 47 H 0.009 0.991 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -9.803 -15.365 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.129 4.129 4 H 0.101 0.899 5 C -0.138 4.138 6 C -0.107 4.107 7 C -0.160 4.160 8 C -0.166 4.166 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.297 3.703 12 O -0.432 6.432 13 N -0.326 5.326 14 C -0.061 4.061 15 C 0.157 3.843 16 H 0.079 0.921 17 C -0.204 4.204 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.048 0.952 47 H 0.028 0.972 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.306 -10.021 -14.628 18.819 hybrid contribution 0.505 1.065 0.275 1.210 sum 6.810 -8.956 -14.353 18.237 Atomic orbital electron populations 1.21799 0.96213 1.01387 1.01720 1.21894 0.95895 0.95030 1.03213 1.21444 0.96717 0.97418 0.97301 0.89864 1.21641 0.93296 1.01971 0.96922 1.21792 0.95576 0.96053 0.97270 1.22768 0.97310 0.95315 1.00590 1.22554 0.95414 0.99084 0.99543 1.22350 0.97569 0.95606 1.00702 1.22228 0.94987 0.97034 1.01752 1.20394 0.77812 0.82300 0.89796 1.90622 1.54416 1.65574 1.32571 1.48235 1.61649 1.08374 1.14327 1.21595 0.99366 0.98134 0.86961 1.18892 0.90406 0.92779 0.82221 0.92061 1.22074 0.97873 0.98342 1.02099 1.21327 1.07736 1.14848 1.12305 0.92333 1.24891 0.95336 0.97531 0.96044 1.69883 1.24022 1.39939 1.18833 0.86513 0.81008 0.82136 0.77844 1.20646 1.21114 1.19965 0.92222 0.93381 0.93061 0.89911 0.91138 0.91495 0.91108 0.91022 0.90835 0.91140 0.91825 0.91903 0.92130 0.91740 0.92016 0.91544 0.94078 0.90434 0.92602 0.88921 0.95244 0.97152 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.76 37.16 0.36 -1.82 16 2 C -0.12 -1.69 4.11 -26.73 -0.11 -1.80 16 3 C -0.11 -1.61 1.36 -91.77 -0.13 -1.74 16 4 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 5 C -0.10 -1.35 3.79 -26.73 -0.10 -1.45 16 6 C -0.09 -0.92 2.90 -89.50 -0.26 -1.18 16 7 C -0.12 -1.16 4.32 -25.07 -0.11 -1.27 16 8 C -0.13 -1.07 6.91 -24.74 -0.17 -1.24 16 9 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 10 C -0.12 -1.19 6.45 -25.61 -0.17 -1.35 16 11 C 0.51 10.62 5.56 -10.98 -0.06 10.56 16 12 O -0.55 -13.83 15.19 5.56 0.08 -13.75 16 13 N -0.59 -12.89 2.75 -175.27 -0.48 -13.37 16 14 C 0.08 1.44 8.89 59.84 0.53 1.97 16 15 C 0.26 6.70 2.63 -69.08 -0.18 6.52 16 16 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 17 C -0.15 -3.55 8.97 37.15 0.33 -3.22 16 18 C -0.52 -14.35 8.02 -34.44 -0.28 -14.63 16 19 H 0.06 1.58 7.25 -52.49 -0.38 1.20 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 1.05 6.84 -51.93 -0.36 0.69 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.91 3.92 -51.93 -0.20 0.71 16 30 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 31 H 0.07 0.96 7.64 -51.93 -0.40 0.57 16 32 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 33 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.07 0.76 6.87 -51.93 -0.36 0.40 16 35 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.69 7.66 -51.93 -0.40 0.30 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 44 H 0.06 0.79 5.81 -51.93 -0.30 0.49 16 45 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 46 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -30.73 357.82 -8.67 -39.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.67 Total: 1.17 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.60 Total: -10.24 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.14 Total: -38.22 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.73 -8.67 -39.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.920 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds