Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.09001 * 109.47318 * 174.88532 * 3 2 1 5 5 C 1.50698 * 109.47219 * 294.88826 * 3 2 1 6 6 O 1.21277 * 120.00682 * 85.46296 * 5 3 2 7 7 N 1.34786 * 119.99709 * 265.73347 * 5 3 2 8 8 C 1.46500 * 119.99832 * 184.30650 * 7 5 3 9 9 H 1.08996 * 109.47445 * 34.99767 * 8 7 5 10 10 C 1.53006 * 109.46886 * 275.00291 * 8 7 5 11 11 C 1.50696 * 109.47016 * 155.00188 * 8 7 5 12 12 H 1.08001 * 119.99911 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99998 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00037 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00051 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.46997 * 59.99903 * 15 13 11 17 17 H 1.48502 * 109.47010 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47047 * 300.00076 * 15 13 11 19 19 C 1.52999 * 109.47066 * 54.88411 * 3 2 1 20 20 C 1.52999 * 109.47526 * 179.97438 * 19 3 2 21 21 C 1.52999 * 109.47526 * 179.97438 * 20 19 3 22 22 C 1.53008 * 109.46598 * 60.00130 * 21 20 19 23 23 C 1.52995 * 109.46941 * 60.00533 * 22 21 20 24 24 C 1.52995 * 109.47178 * 299.99798 * 22 21 20 25 25 C 1.52999 * 109.47191 * 60.00565 * 24 22 21 26 26 H 1.09004 * 109.46974 * 175.88543 * 1 2 3 27 27 H 1.08994 * 109.47262 * 295.88788 * 1 2 3 28 28 H 1.09007 * 109.46975 * 55.88928 * 1 2 3 29 29 H 1.09004 * 109.46780 * 240.00098 * 2 1 3 30 30 H 1.08995 * 109.47180 * 120.00117 * 2 1 3 31 31 H 0.96993 * 119.99939 * 4.31166 * 7 5 3 32 32 H 1.08992 * 109.46961 * 299.99572 * 10 8 7 33 33 H 1.08994 * 109.47161 * 60.00412 * 10 8 7 34 34 H 1.09000 * 109.46511 * 180.02562 * 10 8 7 35 35 H 0.97003 * 120.00490 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47151 * 300.00223 * 19 3 2 37 37 H 1.09001 * 109.47312 * 300.00400 * 20 19 3 38 38 H 1.08999 * 109.46665 * 59.99822 * 20 19 3 39 39 H 1.09001 * 109.47151 * 300.00498 * 21 20 19 40 40 H 1.08993 * 109.47331 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46720 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.46872 * 299.99244 * 23 22 21 43 43 H 1.08993 * 109.47845 * 59.99845 * 23 22 21 44 44 H 1.09008 * 109.47010 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47544 * 300.00228 * 24 22 21 46 46 H 1.08998 * 109.47013 * 180.02562 * 24 22 21 47 47 H 1.08996 * 109.47155 * 179.97438 * 25 24 22 48 48 H 1.09001 * 109.47151 * 59.99422 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4439 0.0916 5 6 1.6438 2.1154 -1.2888 6 8 0.5518 2.6329 -1.3921 7 7 2.5009 2.1375 -2.3288 8 6 2.1544 2.8720 -3.5481 9 1 1.5895 3.7663 -3.2854 10 6 1.3050 1.9807 -4.4564 11 6 3.4158 3.2688 -4.2709 12 1 4.3791 3.0004 -3.8631 13 6 3.3399 3.9738 -5.4535 14 7 2.1669 4.2993 -5.9508 15 14 4.9034 4.4651 -6.3498 16 1 5.6729 3.2463 -6.7074 17 1 4.5522 5.2087 -7.5864 18 1 5.7281 5.3303 -5.4687 19 6 1.4277 2.1999 1.1799 20 6 1.9382 3.6422 1.1804 21 6 1.3254 4.3998 2.3600 22 6 1.7267 3.7163 3.6688 23 6 3.2511 3.7179 3.7983 24 6 1.2162 2.2741 3.6684 25 6 1.8290 1.5165 2.4888 26 1 -0.3633 -1.0251 -0.0737 27 1 -0.3633 0.4487 0.9245 28 1 -0.3633 0.5763 -0.8509 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.3470 1.6670 -2.2699 32 1 1.8699 1.0864 -4.7192 33 1 0.3927 1.6937 -3.9336 34 1 1.0476 2.5271 -5.3638 35 1 2.1134 4.7950 -6.7830 36 1 0.3416 2.1985 1.0883 37 1 3.0243 3.6433 1.2722 38 1 1.6519 4.1291 0.2482 39 1 0.2393 4.3987 2.2677 40 1 1.6894 5.4271 2.3606 41 1 1.2905 4.2563 4.5092 42 1 3.6877 3.1781 2.9579 43 1 3.6148 4.7453 3.7987 44 1 3.5370 3.2314 4.7310 45 1 0.1301 2.2730 3.5761 46 1 1.5017 1.7874 4.6009 47 1 1.4656 0.4889 2.4888 48 1 2.9151 1.5175 2.5811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359275215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -86.460445 kcal Electronic energy + Delta-G solvation = -23771.942124 eV Core-core repulsion = 20631.784714 eV Total energy + Delta-G solvation = -3140.157410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11933 -38.26754 -35.27638 -34.40181 -32.29358 -31.23183 -30.59139 -29.11770 -27.49984 -25.71987 -25.20364 -23.06981 -22.15289 -21.69058 -19.94271 -18.96007 -18.52204 -16.86930 -15.97380 -15.74225 -15.17731 -14.77316 -14.51070 -14.43554 -14.09972 -13.72847 -13.37104 -13.15948 -12.79493 -12.46035 -12.34178 -12.26066 -11.97160 -11.93354 -11.64553 -11.55688 -11.17910 -11.11434 -11.01689 -10.94090 -10.90378 -10.77164 -10.62770 -10.53766 -10.29165 -10.20218 -9.99320 -9.89929 -9.76305 -9.02690 -8.72700 -8.49673 -7.81659 -6.09659 -4.18904 3.26496 3.31750 3.32890 3.52237 4.15538 4.40516 4.64897 4.76808 4.81730 5.07099 5.13895 5.19807 5.22694 5.34544 5.41259 5.44410 5.52936 5.58193 5.61680 5.68253 5.72816 5.80939 5.85981 5.90956 5.95455 6.03319 6.04816 6.11192 6.14645 6.22759 6.26578 6.34463 6.37813 6.47148 6.57639 6.64999 6.73705 6.87475 7.02750 7.20480 7.53453 7.62181 7.73887 7.96526 8.19325 8.75404 8.83394 9.23755 9.49391 10.96110 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.004442 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.251285 B = 6302.621592 C = 7034.209783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.106 4.106 4 H 0.080 0.920 5 C 0.510 3.490 6 O -0.552 6.552 7 N -0.712 5.712 8 C 0.266 3.734 9 H 0.046 0.954 10 C -0.146 4.146 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.066 4.066 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.092 4.092 23 C -0.150 4.150 24 C -0.112 4.112 25 C -0.117 4.117 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.386 0.614 32 H 0.024 0.976 33 H 0.015 0.985 34 H 0.088 0.912 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -5.899 17.433 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.128 4.128 4 H 0.098 0.902 5 C 0.295 3.705 6 O -0.432 6.432 7 N -0.359 5.359 8 C 0.164 3.836 9 H 0.063 0.937 10 C -0.205 4.205 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.085 4.085 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.110 4.110 23 C -0.208 4.208 24 C -0.150 4.150 25 C -0.154 4.154 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.208 -5.392 17.155 17.984 hybrid contribution 1.338 0.064 -0.610 1.472 sum 1.130 -5.328 16.546 17.419 Atomic orbital electron populations 1.21887 0.95343 1.01020 1.03221 1.21408 0.96952 0.94386 1.01930 1.21434 1.00991 0.96137 0.94228 0.90191 1.20327 0.85136 0.80179 0.84864 1.90620 1.21820 1.47157 1.83561 1.46586 1.20284 1.52540 1.16534 1.18675 0.95087 0.90437 0.79352 0.93661 1.22059 0.97053 0.99011 1.02338 1.21199 0.92061 1.36600 1.07303 0.92238 1.24882 0.96381 0.95451 0.96961 1.69895 1.23066 1.38565 1.20602 0.86531 0.83031 0.78667 0.78995 1.20190 1.21138 1.20205 1.20991 1.01460 0.94025 0.92029 1.21645 0.99992 0.95255 0.98769 1.21521 1.00660 0.98613 0.94087 1.21098 0.96024 0.96144 0.97740 1.21938 0.95722 1.01541 1.01558 1.21535 1.00284 0.95220 0.97934 1.21679 1.00755 0.98850 0.94101 0.93481 0.92508 0.91161 0.91894 0.91405 0.78170 0.95673 0.96611 0.89332 0.92577 0.89747 0.92172 0.91117 0.92059 0.92322 0.91858 0.91787 0.93046 0.93253 0.92127 0.92433 0.91868 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.09 37.16 0.34 -1.80 16 2 C -0.11 -1.38 5.19 -26.73 -0.14 -1.52 16 3 C -0.11 -1.53 2.09 -91.77 -0.19 -1.72 16 4 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.51 9.94 5.24 -10.98 -0.06 9.88 16 6 O -0.55 -12.76 14.05 5.56 0.08 -12.68 16 7 N -0.71 -14.90 5.07 -54.93 -0.28 -15.17 16 8 C 0.27 6.83 2.53 -69.08 -0.17 6.66 16 9 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 10 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 11 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 14 N -0.88 -25.10 11.32 55.43 0.63 -24.48 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.07 -0.88 0.96 -90.62 -0.09 -0.97 16 20 C -0.12 -1.69 4.67 -26.73 -0.12 -1.82 16 21 C -0.11 -1.35 5.45 -26.73 -0.15 -1.50 16 22 C -0.09 -0.93 3.19 -90.62 -0.29 -1.22 16 23 C -0.15 -1.44 8.50 37.15 0.32 -1.13 16 24 C -0.11 -1.10 5.45 -26.73 -0.15 -1.24 16 25 C -0.12 -1.22 4.58 -26.73 -0.12 -1.35 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.72 6.59 -51.93 -0.34 0.38 16 28 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.70 6.71 -51.93 -0.35 0.36 16 31 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.08 1.28 6.15 -51.93 -0.32 0.96 16 37 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 38 H 0.07 1.26 6.81 -51.93 -0.35 0.90 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 48 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -29.31 354.36 -8.76 -38.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.63 Total: 7.09 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.87 Total: -13.91 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.35 Total: -39.65 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.31 -8.76 -38.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359275215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.391 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds