Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55235 * 330.71397 * 4 3 2 6 6 C 1.52998 * 117.50017 * 116.39559 * 4 3 2 7 7 C 1.53000 * 60.00266 * 107.48668 * 6 4 3 8 8 H 1.08999 * 117.49483 * 252.50954 * 7 6 4 9 9 C 1.50695 * 117.49787 * 107.48873 * 7 6 4 10 10 O 1.21273 * 120.00600 * 291.37545 * 9 7 6 11 11 N 1.34783 * 119.99781 * 111.37750 * 9 7 6 12 12 C 1.46496 * 119.99828 * 179.97438 * 11 9 7 13 13 C 1.50697 * 109.46979 * 90.00321 * 12 11 9 14 14 H 1.08004 * 119.99935 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00372 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99578 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47223 * 89.99750 * 17 15 13 19 19 H 1.48501 * 109.47168 * 209.99647 * 17 15 13 20 20 H 1.48499 * 109.46991 * 329.99594 * 17 15 13 21 21 C 1.46506 * 119.99735 * 0.02562 * 11 9 7 22 22 C 1.52994 * 109.47160 * 90.00104 * 21 11 9 23 23 C 1.53001 * 109.47107 * 179.97438 * 22 21 11 24 24 C 1.53006 * 109.46972 * 64.99766 * 23 22 21 25 25 C 1.52995 * 109.47484 * 184.99676 * 23 22 21 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.08997 * 117.49816 * 214.97686 * 6 4 3 34 34 H 1.08997 * 117.49812 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.46823 * 209.99983 * 12 11 9 36 36 H 1.08995 * 109.47632 * 330.00094 * 12 11 9 37 37 H 0.97003 * 119.99437 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.46391 * 209.99650 * 21 11 9 39 39 H 1.08998 * 109.47069 * 329.99448 * 21 11 9 40 40 H 1.09002 * 109.47097 * 299.99113 * 22 21 11 41 41 H 1.08998 * 109.47665 * 59.99709 * 22 21 11 42 42 H 1.08994 * 109.47218 * 305.00215 * 23 22 21 43 43 H 1.09003 * 109.46949 * 60.00164 * 24 23 22 44 44 H 1.09001 * 109.47051 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.47309 * 299.99909 * 24 23 22 46 46 H 1.09001 * 109.47217 * 59.99689 * 25 23 22 47 47 H 1.09001 * 109.47582 * 180.02562 * 25 23 22 48 48 H 1.09003 * 109.47235 * 300.00325 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 4.0403 0.5845 0.4801 6 6 4.2760 2.0458 -1.2165 7 6 4.2766 2.7943 0.1179 8 1 3.6514 3.6837 0.1963 9 6 5.5697 2.8381 0.8905 10 8 6.0124 1.8256 1.3901 11 7 6.2343 4.0028 1.0265 12 6 7.4910 4.0456 1.7780 13 6 8.6444 3.7872 0.8431 14 1 8.4597 3.6094 -0.2061 15 6 9.9355 3.7789 1.3269 16 7 10.9419 3.5530 0.5110 17 14 10.2550 4.0872 3.1413 18 1 10.2365 2.7954 3.8737 19 1 11.5825 4.7315 3.3078 20 1 9.1999 4.9796 3.6850 21 6 5.6992 5.2262 0.4235 22 6 4.7804 5.9287 1.4251 23 6 4.2221 7.2066 0.7956 24 6 3.3256 6.8418 -0.3894 25 6 3.4042 7.9729 1.8370 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.2109 1.5851 -1.5355 34 1 3.6505 2.4425 -2.0161 35 1 7.6074 5.0280 2.2357 36 1 7.4756 3.2820 2.5556 37 1 11.8502 3.5467 0.8515 38 1 6.5219 5.8899 0.1576 39 1 5.1332 4.9720 -0.4726 40 1 3.9577 5.2649 1.6909 41 1 5.3465 6.1828 2.3212 42 1 5.0458 7.8309 0.4494 43 1 2.5019 6.2175 -0.0432 44 1 2.9275 7.7522 -0.8376 45 1 3.9083 6.2959 -1.1314 46 1 4.0428 8.2327 2.6813 47 1 3.0060 8.8830 1.3885 48 1 2.5805 7.3485 2.1832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360315530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = -48.131257 kcal Electronic energy + Delta-G solvation = -22928.067051 eV Core-core repulsion = 19789.571719 eV Total energy + Delta-G solvation = -3138.495332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.62935 -37.31612 -36.59251 -34.53556 -33.82709 -32.48508 -29.41098 -28.00705 -27.23582 -27.14936 -24.08406 -23.19994 -22.04653 -21.40397 -20.35388 -19.90347 -18.20354 -16.86904 -16.68111 -15.68470 -15.24912 -15.05724 -14.65689 -14.35123 -14.19180 -13.64520 -13.49670 -13.46359 -13.19737 -12.84424 -12.58778 -12.32947 -12.29164 -12.18518 -11.86963 -11.76003 -11.53963 -11.35231 -11.18508 -11.04245 -10.95561 -10.89079 -10.87110 -10.56475 -10.48406 -10.38188 -10.13705 -10.00273 -9.77294 -9.50351 -8.94335 -8.56724 -7.65391 -6.06640 -4.04876 3.17094 3.30451 3.36385 3.38393 3.75360 4.16091 4.41501 4.61261 4.86977 4.89638 4.93144 4.96157 4.97895 5.12068 5.15437 5.22999 5.28633 5.35911 5.47605 5.50495 5.55568 5.65623 5.66662 5.71911 5.73593 5.78756 5.82458 5.83424 5.85941 5.90754 5.96692 6.08538 6.12984 6.17703 6.19689 6.23216 6.23626 6.39850 6.49019 6.50996 6.75351 6.98456 7.41340 7.64082 8.32353 8.50028 8.96148 9.05817 9.54144 11.06852 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.005242 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.933019 B = 5340.402222 C = 7033.739335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.125 4.125 5 H 0.116 0.884 6 C -0.150 4.150 7 C -0.184 4.184 8 H 0.117 0.883 9 C 0.537 3.463 10 O -0.543 6.543 11 N -0.589 5.589 12 C 0.216 3.784 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.112 3.888 22 C -0.134 4.134 23 C -0.095 4.095 24 C -0.150 4.150 25 C -0.145 4.145 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.587 3.720 -1.666 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.124 4.124 4 C -0.143 4.143 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.205 4.205 8 H 0.135 0.865 9 C 0.324 3.676 10 O -0.420 6.420 11 N -0.319 5.319 12 C 0.096 3.904 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.012 4.012 22 C -0.173 4.173 23 C -0.115 4.115 24 C -0.207 4.207 25 C -0.203 4.203 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.115 3.179 -1.391 20.412 hybrid contribution 0.453 0.346 0.873 1.043 sum -19.662 3.525 -0.518 19.982 Atomic orbital electron populations 1.21778 0.96110 1.01439 1.01628 1.21504 0.95354 0.96782 1.02392 1.21207 0.92368 0.97031 1.01826 1.22406 0.94115 0.96221 1.01577 0.86606 1.23046 1.02988 1.02484 0.90250 1.22397 0.98470 0.97741 1.01929 0.86470 1.19445 0.84254 0.83461 0.80473 1.90647 1.68732 1.33547 1.49107 1.47809 1.23802 1.06949 1.53341 1.19636 0.81179 0.96986 0.92617 1.21340 0.89546 1.48978 0.96663 0.90784 1.24851 0.95968 0.94578 0.97600 1.69899 0.99128 1.49639 1.35018 0.86862 0.77794 0.79103 0.86013 1.19928 1.21078 1.19073 1.21541 0.97451 0.87037 0.95142 1.22135 0.99308 0.96227 0.99625 1.21071 0.98141 0.96565 0.95676 1.21912 0.99552 1.01178 0.98041 1.21825 0.99919 0.99691 0.98846 0.92891 0.92894 0.92843 0.91818 0.91800 0.91685 0.91884 0.88234 0.88345 0.95333 0.94714 0.92606 0.89991 0.90970 0.92078 0.91520 0.90886 0.92884 0.92992 0.92186 0.92744 0.92957 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.15 0.37 -0.85 16 2 C -0.12 -1.18 5.89 -26.74 -0.16 -1.33 16 3 C -0.09 -0.91 5.50 -26.73 -0.15 -1.06 16 4 C -0.12 -1.72 5.25 -90.62 -0.48 -2.19 16 5 H 0.12 1.85 7.60 -51.93 -0.39 1.46 16 6 C -0.15 -2.07 9.88 -26.73 -0.26 -2.33 16 7 C -0.18 -2.83 4.52 -91.77 -0.41 -3.25 16 8 H 0.12 1.53 6.48 -51.93 -0.34 1.19 16 9 C 0.54 11.30 7.46 -10.98 -0.08 11.22 16 10 O -0.54 -13.79 15.84 5.56 0.09 -13.70 16 11 N -0.59 -12.38 2.46 -175.07 -0.43 -12.81 16 12 C 0.22 5.40 4.23 -5.20 -0.02 5.38 16 13 C -0.53 -15.37 9.94 -34.44 -0.34 -15.72 16 14 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 17 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 18 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C 0.11 1.81 4.79 -4.04 -0.02 1.79 16 22 C -0.13 -1.78 4.89 -26.73 -0.13 -1.91 16 23 C -0.10 -1.02 2.92 -90.62 -0.26 -1.28 16 24 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 25 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.07 8.03 -51.93 -0.42 0.66 16 35 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.03 0.93 6.85 -51.93 -0.36 0.58 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 38 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.07 1.02 5.06 -51.93 -0.26 0.76 16 40 H 0.06 0.79 7.46 -51.93 -0.39 0.40 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -33.33 380.74 -9.08 -42.41 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.20 Total: -0.03 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.37 Total: -11.60 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.34 Total: -40.03 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.33 -9.08 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.726 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds