Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.55294 * 29.32671 * 4 3 2 6 6 C 1.53004 * 117.49986 * 243.61991 * 4 3 2 7 7 C 1.53000 * 59.99969 * 252.51176 * 6 4 3 8 8 H 1.08998 * 117.49259 * 252.51155 * 7 6 4 9 9 C 1.50696 * 117.52251 * 107.47960 * 7 6 4 10 10 O 1.21280 * 119.99834 * 291.37167 * 9 7 6 11 11 N 1.34773 * 119.99883 * 111.36895 * 9 7 6 12 12 C 1.46496 * 120.00372 * 0.02562 * 11 9 7 13 13 C 1.50700 * 109.46939 * 89.99940 * 12 11 9 14 14 H 1.07999 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99798 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00389 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99868 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47069 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47205 * 120.00119 * 17 15 13 20 20 H 1.48506 * 109.46984 * 239.99954 * 17 15 13 21 21 C 1.46508 * 119.99980 * 180.02562 * 11 9 7 22 22 C 1.52999 * 109.47183 * 89.99965 * 21 11 9 23 23 C 1.52999 * 109.47230 * 180.02562 * 22 21 11 24 24 C 1.52995 * 109.47160 * 64.99781 * 23 22 21 25 25 C 1.52997 * 109.47208 * 185.00209 * 23 22 21 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 30 30 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09003 * 117.49165 * 0.02562 * 6 4 3 34 34 H 1.08997 * 117.49944 * 145.01634 * 6 4 3 35 35 H 1.08996 * 109.47963 * 210.00432 * 12 11 9 36 36 H 1.09006 * 109.47069 * 330.00466 * 12 11 9 37 37 H 0.96997 * 120.00425 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47168 * 209.99527 * 21 11 9 39 39 H 1.08997 * 109.46956 * 329.99971 * 21 11 9 40 40 H 1.09003 * 109.47011 * 300.00257 * 22 21 11 41 41 H 1.09004 * 109.47393 * 59.99864 * 22 21 11 42 42 H 1.08998 * 109.46570 * 304.99589 * 23 22 21 43 43 H 1.09002 * 109.47063 * 60.00473 * 24 23 22 44 44 H 1.09004 * 109.46608 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47310 * 299.99897 * 24 23 22 46 46 H 1.09003 * 109.47727 * 59.99361 * 25 23 22 47 47 H 1.08998 * 109.47315 * 179.97438 * 25 23 22 48 48 H 1.09002 * 109.47146 * 299.99607 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0399 0.5853 -0.4826 6 6 4.2770 2.0454 1.2150 7 6 4.2764 2.7946 -0.1191 8 1 5.2112 2.8266 -0.6786 9 6 3.4119 4.0242 -0.2268 10 8 2.2037 3.9188 -0.2175 11 7 3.9814 5.2410 -0.3334 12 6 5.4408 5.3684 -0.3451 13 6 5.9406 5.2883 -1.7645 14 1 5.2410 5.1562 -2.5767 15 6 7.2909 5.3837 -2.0263 16 7 8.1428 5.5440 -1.0373 17 14 7.9104 5.2851 -3.7859 18 1 6.7594 5.1040 -4.7065 19 1 8.6270 6.5396 -4.1293 20 1 8.8375 4.1328 -3.9205 21 6 3.1410 6.4366 -0.4375 22 6 2.8490 6.9784 0.9632 23 6 1.9708 8.2265 0.8545 24 6 0.6073 7.8420 0.2769 25 6 1.7818 8.8397 2.2434 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.6520 2.4416 2.0153 34 1 5.2121 1.5846 1.5331 35 1 5.7254 6.3278 0.0868 36 1 5.8806 4.5614 0.2410 37 1 9.0928 5.6107 -1.2214 38 1 3.6614 7.1969 -1.0199 39 1 2.2034 6.1797 -0.9305 40 1 2.3286 6.2180 1.5457 41 1 3.7866 7.2352 1.4563 42 1 2.4514 8.9528 0.1991 43 1 0.1267 7.1156 0.9324 44 1 -0.0182 8.7313 0.1990 45 1 0.7419 7.4052 -0.7127 46 1 2.7532 9.1136 2.6550 47 1 1.1566 9.7291 2.1659 48 1 1.3013 8.1134 2.8989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360315531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -52.054061 kcal Electronic energy + Delta-G solvation = -23114.043398 eV Core-core repulsion = 19975.377961 eV Total energy + Delta-G solvation = -3138.665438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58070 -37.20656 -35.95490 -34.64430 -33.57413 -32.52429 -29.34939 -27.24084 -27.00933 -26.76212 -24.25753 -23.05908 -21.93400 -21.34577 -20.28769 -19.71340 -17.85951 -16.67862 -16.27558 -15.35950 -15.07494 -14.92540 -14.51133 -14.39116 -14.04689 -13.62003 -13.26801 -13.24179 -12.84118 -12.45764 -12.35349 -12.25433 -12.05909 -11.97952 -11.68555 -11.63622 -11.39169 -11.01281 -10.95295 -10.91082 -10.77943 -10.74148 -10.64968 -10.58625 -10.45840 -10.23739 -10.00134 -9.69841 -9.64591 -9.40850 -8.74216 -8.52952 -7.63136 -6.17370 -4.24749 3.21396 3.28079 3.30870 3.36192 3.94377 4.31168 4.40571 4.93937 5.05715 5.13614 5.15376 5.16257 5.26226 5.31429 5.40252 5.44074 5.52947 5.65994 5.74152 5.82181 5.85587 5.90384 5.92614 6.01867 6.02330 6.04495 6.05820 6.11450 6.15004 6.21478 6.26843 6.30396 6.37097 6.41925 6.47119 6.60287 6.65950 6.67586 6.72706 6.84061 6.95867 7.23793 7.61858 7.78368 8.08498 8.41471 8.82582 9.11791 9.43520 10.89050 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.006714 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.691068 B = 4169.351848 C = 6658.750227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.127 4.127 5 H 0.104 0.896 6 C -0.155 4.155 7 C -0.173 4.173 8 H 0.135 0.865 9 C 0.546 3.454 10 O -0.570 6.570 11 N -0.592 5.592 12 C 0.238 3.762 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.120 3.880 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -2.493 4.670 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.111 4.111 4 C -0.145 4.145 5 H 0.122 0.878 6 C -0.193 4.193 7 C -0.194 4.194 8 H 0.153 0.847 9 C 0.334 3.666 10 O -0.452 6.452 11 N -0.321 5.321 12 C 0.118 3.882 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.003 4.003 22 C -0.165 4.165 23 C -0.113 4.113 24 C -0.203 4.203 25 C -0.202 4.202 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.666 -2.491 4.708 11.922 hybrid contribution 0.868 0.107 -0.990 1.321 sum -9.797 -2.384 3.719 10.747 Atomic orbital electron populations 1.21738 0.96358 1.00714 1.01859 1.21616 0.95457 0.98029 1.01235 1.21182 0.91637 0.94550 1.03775 1.22376 0.95642 0.95153 1.01366 0.87813 1.22956 1.02413 1.03025 0.90895 1.22363 1.02610 0.91397 1.03022 0.84700 1.19523 0.87289 0.84090 0.75666 1.90568 1.14820 1.86613 1.53195 1.48159 1.09416 1.04705 1.69852 1.19410 0.73068 0.98362 0.97360 1.21566 0.92210 1.50815 0.92880 0.92118 1.24941 0.96671 0.94806 0.97395 1.69934 1.02731 1.49252 1.31064 0.86489 0.78901 0.77764 0.84630 1.19671 1.20868 1.20833 1.21331 0.95369 0.87554 0.96081 1.21983 0.99392 0.96655 0.98457 1.21051 0.96164 0.97248 0.96853 1.21866 0.96392 1.00681 1.01394 1.21819 1.01369 1.00152 0.96836 0.92813 0.93422 0.92944 0.92554 0.92594 0.90440 0.91620 0.89028 0.88478 0.94842 0.94219 0.92625 0.90811 0.90912 0.92086 0.91935 0.91231 0.92809 0.93363 0.92279 0.92791 0.93095 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.13 -1.59 5.89 -26.73 -0.16 -1.74 16 3 C -0.07 -1.16 3.75 -26.73 -0.10 -1.26 16 4 C -0.13 -2.02 5.74 -90.62 -0.52 -2.54 16 5 H 0.10 1.49 8.07 -51.93 -0.42 1.07 16 6 C -0.16 -2.47 9.88 -26.73 -0.26 -2.73 16 7 C -0.17 -3.28 4.80 -91.77 -0.44 -3.72 16 8 H 0.14 2.80 7.00 -51.93 -0.36 2.44 16 9 C 0.55 11.43 7.44 -10.99 -0.08 11.35 16 10 O -0.57 -12.34 12.68 5.56 0.07 -12.27 16 11 N -0.59 -12.59 2.46 -175.06 -0.43 -13.02 16 12 C 0.24 5.68 4.80 -5.20 -0.02 5.66 16 13 C -0.54 -13.99 9.08 -34.44 -0.31 -14.30 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.12 2.24 5.16 -4.04 -0.02 2.22 16 22 C -0.13 -2.04 5.01 -26.73 -0.13 -2.17 16 23 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 24 C -0.15 -1.87 8.95 37.16 0.33 -1.53 16 25 C -0.14 -1.69 9.19 37.16 0.34 -1.34 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 32 H 0.07 1.11 7.30 -51.93 -0.38 0.73 16 33 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 0.98 6.64 -51.93 -0.34 0.64 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.07 1.37 5.84 -51.93 -0.30 1.07 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -27.49 379.89 -9.52 -37.02 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -9.23 Total: 4.15 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.38 Total: -13.38 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.31 Total: -36.83 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.49 -9.52 -37.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.037 kcal (2) G-P(sol) polarization free energy of solvation -27.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds