Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47774 * 2 1 4 4 C 1.53003 * 109.47616 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55832 * 330.70520 * 4 3 2 6 6 C 1.53000 * 117.49792 * 116.38903 * 4 3 2 7 7 C 1.53002 * 60.02940 * 107.48056 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46494 * 120.00116 * 0.02562 * 11 9 7 13 13 C 1.50701 * 109.47244 * 89.99690 * 12 11 9 14 14 H 1.08005 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99646 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00106 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47392 * 59.99930 * 17 15 13 19 19 H 1.48499 * 109.47439 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47303 * 300.00093 * 17 15 13 21 21 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 22 22 C 1.53000 * 109.47382 * 90.00252 * 21 11 9 23 23 C 1.52998 * 109.47381 * 179.97438 * 22 21 11 24 24 C 1.52997 * 109.46854 * 174.99876 * 23 22 21 25 25 C 1.52998 * 109.47145 * 294.99793 * 23 22 21 26 26 H 1.09004 * 109.46690 * 300.00345 * 1 2 3 27 27 H 1.09001 * 109.47126 * 59.99880 * 1 2 3 28 28 H 1.09000 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46690 * 239.99655 * 2 1 3 30 30 H 1.09001 * 109.47126 * 120.00120 * 2 1 3 31 31 H 1.08998 * 109.47476 * 59.99630 * 3 2 1 32 32 H 1.09001 * 109.46892 * 300.00263 * 3 2 1 33 33 H 1.09002 * 117.49833 * 214.98161 * 6 4 3 34 34 H 1.09002 * 117.49953 * 359.97438 * 6 4 3 35 35 H 1.08996 * 109.47035 * 209.99769 * 12 11 9 36 36 H 1.09004 * 109.47031 * 329.99932 * 12 11 9 37 37 H 0.97010 * 119.99498 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47152 * 209.99964 * 21 11 9 39 39 H 1.09002 * 109.47677 * 329.99971 * 21 11 9 40 40 H 1.08999 * 109.46742 * 299.99963 * 22 21 11 41 41 H 1.09002 * 109.46944 * 59.99270 * 22 21 11 42 42 H 1.09000 * 109.47197 * 54.99875 * 23 22 21 43 43 H 1.09000 * 109.47220 * 60.00012 * 24 23 22 44 44 H 1.09007 * 109.46910 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47591 * 299.99400 * 24 23 22 46 46 H 1.09000 * 109.47140 * 300.00117 * 25 23 22 47 47 H 1.09004 * 109.46850 * 59.99724 * 25 23 22 48 48 H 1.08999 * 109.47382 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 4.0405 0.5847 0.4802 6 6 4.2760 2.0457 -1.2166 7 6 4.2769 2.7949 0.1174 8 1 5.2124 2.8273 0.6759 9 6 3.4123 4.0246 0.2254 10 8 2.2042 3.9191 0.2168 11 7 3.9818 5.2416 0.3315 12 6 5.4412 5.3691 0.3413 13 6 5.9404 5.5367 -1.0707 14 1 5.2404 5.5476 -1.8932 15 6 7.2904 5.6771 -1.3126 16 7 8.1427 5.6643 -0.3110 17 14 7.9091 5.8857 -3.0627 18 1 7.3092 7.1068 -3.6576 19 1 9.3884 6.0148 -3.0528 20 1 7.5216 4.7005 -3.8692 21 6 3.1414 6.4368 0.4369 22 6 2.8501 6.7271 1.9106 23 6 1.9729 7.9758 2.0208 24 6 1.5787 8.1946 3.4829 25 6 2.7511 9.1921 1.5149 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 5.2110 1.5850 -1.5357 34 1 3.6505 2.4423 -2.0163 35 1 5.7259 6.2390 0.9330 36 1 5.8813 4.4726 0.7782 37 1 9.0926 5.7635 -0.4811 38 1 3.6614 7.2868 -0.0049 39 1 2.2035 6.2695 -0.0927 40 1 2.3301 5.8772 2.3524 41 1 3.7880 6.8944 2.4402 42 1 1.0744 7.8430 1.4182 43 1 2.4772 8.3275 4.0855 44 1 0.9533 9.0840 3.5613 45 1 1.0242 7.3282 3.8433 46 1 3.6496 9.3249 2.1175 47 1 3.0320 9.0361 0.4733 48 1 2.1264 10.0817 1.5938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360315532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -50.145027 kcal Electronic energy + Delta-G solvation = -23096.458290 eV Core-core repulsion = 19957.875634 eV Total energy + Delta-G solvation = -3138.582656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.56690 -37.19627 -35.95599 -34.62592 -33.55754 -32.50610 -29.35175 -27.22917 -27.02071 -26.71279 -24.29576 -23.01800 -21.92382 -21.36917 -20.24506 -19.68667 -17.87029 -16.48533 -16.45789 -15.40255 -15.04690 -14.93063 -14.55269 -14.28603 -13.98587 -13.71676 -13.46310 -13.04202 -12.72615 -12.46132 -12.40296 -12.12963 -12.04552 -11.99397 -11.71793 -11.59888 -11.40327 -11.11857 -10.96929 -10.84813 -10.80149 -10.68110 -10.60297 -10.54316 -10.44319 -10.19989 -10.06182 -9.70092 -9.58167 -9.40098 -8.73603 -8.49334 -7.63140 -6.15223 -4.21512 3.25133 3.29936 3.30288 3.35775 3.91902 4.35645 4.43323 4.96388 5.08546 5.12723 5.17296 5.18088 5.26830 5.33501 5.41209 5.50632 5.54457 5.65385 5.75144 5.81622 5.84559 5.89484 5.93411 6.03055 6.03438 6.04558 6.06117 6.14610 6.21156 6.26177 6.27080 6.29660 6.38984 6.42516 6.48986 6.55888 6.66221 6.66691 6.72328 6.85663 6.96626 7.23231 7.60737 7.80073 8.10431 8.41251 8.83570 9.11481 9.45753 10.91564 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.006867 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.571927 B = 4076.316159 C = 6818.877594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.133 4.133 5 H 0.103 0.897 6 C -0.140 4.140 7 C -0.168 4.168 8 H 0.123 0.877 9 C 0.545 3.455 10 O -0.571 6.571 11 N -0.592 5.592 12 C 0.239 3.761 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.121 3.879 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -2.843 3.539 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.111 4.111 4 C -0.152 4.152 5 H 0.121 0.879 6 C -0.177 4.177 7 C -0.189 4.189 8 H 0.141 0.859 9 C 0.334 3.666 10 O -0.453 6.453 11 N -0.321 5.321 12 C 0.119 3.881 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.003 4.003 22 C -0.165 4.165 23 C -0.112 4.112 24 C -0.202 4.202 25 C -0.207 4.207 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.129 -2.845 3.582 11.114 hybrid contribution 0.863 0.282 -0.956 1.318 sum -9.266 -2.563 2.626 9.966 Atomic orbital electron populations 1.21739 0.96372 1.00703 1.01862 1.21611 0.95441 0.98047 1.01217 1.21176 0.91681 0.94512 1.03750 1.22439 0.95631 0.94912 1.02198 0.87942 1.22869 1.02181 1.01920 0.90764 1.22196 1.01484 0.91258 1.03957 0.85914 1.19535 0.87313 0.84194 0.75601 1.90570 1.14805 1.86622 1.53274 1.48177 1.09436 1.04739 1.69766 1.19410 0.73025 0.98186 0.97444 1.21429 0.92125 1.50595 0.92732 0.92314 1.24912 0.96645 0.94965 0.97245 1.69918 1.02781 1.49769 1.30757 0.86605 0.77582 0.78868 0.84701 1.20211 1.21203 1.20109 1.21328 0.95334 0.88139 0.95478 1.21986 0.99641 0.96972 0.97922 1.21043 0.98571 0.95173 0.96441 1.21821 1.01029 1.01003 0.96323 1.21902 1.00002 0.96977 1.01780 0.92864 0.92896 0.93429 0.92545 0.92629 0.90578 0.91564 0.88448 0.88934 0.94877 0.94433 0.92574 0.90466 0.91327 0.92087 0.91882 0.91400 0.92805 0.93106 0.92941 0.92624 0.92104 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.13 -1.58 5.89 -26.74 -0.16 -1.74 16 3 C -0.07 -1.16 3.76 -26.73 -0.10 -1.26 16 4 C -0.13 -2.12 5.74 -90.58 -0.52 -2.64 16 5 H 0.10 1.43 8.07 -51.93 -0.42 1.01 16 6 C -0.14 -2.41 9.88 -26.73 -0.26 -2.67 16 7 C -0.17 -3.19 5.29 -91.73 -0.49 -3.67 16 8 H 0.12 2.39 6.44 -51.93 -0.33 2.05 16 9 C 0.54 11.43 7.44 -10.98 -0.08 11.35 16 10 O -0.57 -12.42 12.69 5.56 0.07 -12.35 16 11 N -0.59 -12.58 2.46 -175.06 -0.43 -13.01 16 12 C 0.24 5.70 4.99 -5.20 -0.03 5.67 16 13 C -0.53 -13.79 9.39 -34.44 -0.32 -14.12 16 14 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 17 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.12 2.25 5.16 -4.04 -0.02 2.23 16 22 C -0.13 -2.05 5.01 -26.73 -0.13 -2.18 16 23 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 24 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 25 C -0.15 -1.91 8.95 37.16 0.33 -1.58 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.33 6.92 -51.93 -0.36 0.97 16 32 H 0.07 1.15 7.30 -51.93 -0.38 0.77 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 0.93 5.99 -51.93 -0.31 0.62 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 39 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -27.51 379.67 -9.52 -37.03 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -9.17 Total: 4.07 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.43 Total: -13.20 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.31 Total: -36.88 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.51 -9.52 -37.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.115 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds