Wall clock time and date at job start Tue Mar 31 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 C 1.53000 * 109.47022 * 119.99681 * 2 1 3 5 5 C 1.52997 * 109.47157 * 65.00309 * 4 2 1 6 6 N 1.46501 * 109.47623 * 178.87286 * 5 4 2 7 7 C 1.34777 * 119.99783 * 275.53236 * 6 5 4 8 8 O 1.21283 * 120.00095 * 355.20827 * 7 6 5 9 9 C 1.50704 * 120.00001 * 175.20760 * 7 6 5 10 10 C 1.52995 * 109.47230 * 185.14891 * 9 7 6 11 11 C 1.50704 * 109.47230 * 179.97438 * 10 9 7 12 12 H 1.07996 * 119.99300 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00058 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99923 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99814 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47100 * 60.00416 * 15 13 11 17 17 H 1.48500 * 109.47162 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47371 * 300.00284 * 15 13 11 19 19 C 1.46499 * 120.00120 * 95.52385 * 6 5 4 20 20 C 1.54268 * 110.02883 * 52.55305 * 19 6 5 21 21 C 1.54962 * 104.16044 * 217.13556 * 20 19 6 22 22 C 1.54885 * 102.77861 * 37.88929 * 21 20 19 23 23 C 1.53871 * 110.03524 * 295.33841 * 19 6 5 24 24 H 1.09000 * 109.47478 * 300.00191 * 1 2 3 25 25 H 1.08997 * 109.47002 * 60.00370 * 1 2 3 26 26 H 1.09001 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47478 * 239.99809 * 2 1 3 28 28 H 1.09001 * 109.47163 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47047 * 299.99590 * 3 2 1 30 30 H 1.09002 * 109.47453 * 60.00002 * 3 2 1 31 31 H 1.08995 * 109.47417 * 304.99860 * 4 2 1 32 32 H 1.09001 * 109.46848 * 184.99974 * 4 2 1 33 33 H 1.09004 * 109.47413 * 58.87016 * 5 4 2 34 34 H 1.08997 * 109.47051 * 298.87375 * 5 4 2 35 35 H 1.09001 * 109.46940 * 305.15409 * 9 7 6 36 36 H 1.09002 * 109.46679 * 65.14622 * 9 7 6 37 37 H 1.08992 * 109.47359 * 300.00190 * 10 9 7 38 38 H 1.09004 * 109.47083 * 60.00547 * 10 9 7 39 39 H 0.97003 * 120.00055 * 179.97438 * 14 13 11 40 40 H 1.08998 * 110.01418 * 173.94416 * 19 6 5 41 41 H 1.09000 * 110.48631 * 335.78539 * 20 19 6 42 42 H 1.09001 * 110.48498 * 98.42305 * 20 19 6 43 43 H 1.09009 * 110.71856 * 279.57574 * 21 20 19 44 44 H 1.08998 * 110.92279 * 156.30137 * 21 20 19 45 45 H 1.08996 * 110.48954 * 203.40749 * 22 21 20 46 46 H 1.08994 * 110.59930 * 80.81374 * 22 21 20 47 47 H 1.09000 * 110.03474 * 238.56821 * 23 19 6 48 48 H 1.09004 * 110.03384 * 359.97438 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1466 -2.8918 2.3712 7 6 3.4096 -3.3621 2.3828 8 8 4.0942 -3.2864 1.3845 9 6 3.9713 -3.9821 3.6364 10 6 5.4496 -4.3134 3.4232 11 6 6.0115 -4.9328 4.6770 12 1 5.3773 -5.0761 5.5393 13 6 7.3350 -5.3165 4.7230 14 7 8.1072 -5.1414 3.6730 15 14 8.0315 -6.0835 6.2773 16 1 7.2859 -7.3287 6.5918 17 1 9.4663 -6.4053 6.0705 18 1 7.8957 -5.1271 7.4051 19 6 1.2852 -3.0769 3.5416 20 6 -0.0489 -3.7257 3.1184 21 6 -1.1067 -3.0398 4.0195 22 6 -0.6004 -1.5777 4.0901 23 6 0.9349 -1.7120 4.1595 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0533 -2.6500 0.2899 34 1 0.5484 -2.2730 1.1623 35 1 3.8719 -3.2805 4.4647 36 1 3.4235 -4.8959 3.8666 37 1 5.5490 -5.0149 2.5950 38 1 5.9973 -3.3995 3.1931 39 1 9.0385 -5.4110 3.7055 40 1 1.7874 -3.7029 4.2792 41 1 -0.2548 -3.5238 2.0673 42 1 -0.0268 -4.7995 3.3043 43 1 -1.1201 -3.4922 5.0112 44 1 -2.0953 -3.0847 3.5627 45 1 -0.9810 -1.0849 4.9846 46 1 -0.8951 -1.0264 3.1972 47 1 1.2663 -1.6757 5.1972 48 1 1.4062 -0.9117 3.5888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360338412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:49 Heat of formation + Delta-G solvation = -73.745610 kcal Electronic energy + Delta-G solvation = -23299.537302 eV Core-core repulsion = 20159.931248 eV Total energy + Delta-G solvation = -3139.606054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07481 -37.71342 -36.66183 -33.89652 -33.44446 -31.16819 -29.43698 -28.84434 -27.36483 -27.25293 -25.72022 -23.48648 -21.32573 -20.80218 -20.52592 -19.98743 -18.26853 -17.18845 -16.02705 -15.95437 -15.42971 -15.12555 -14.75737 -14.41569 -14.39285 -14.04295 -13.69368 -13.39632 -13.08840 -12.81532 -12.55757 -12.31720 -12.15332 -11.93338 -11.76205 -11.61193 -11.35791 -11.21041 -11.16972 -11.14567 -10.97349 -10.88285 -10.85610 -10.73541 -10.58708 -10.48610 -10.17685 -9.91663 -9.55951 -9.13226 -8.91817 -8.33656 -8.26004 -5.93399 -3.97758 3.26945 3.33653 3.35823 3.40612 3.42562 4.47612 4.50143 4.53038 4.74580 4.77537 4.83562 4.89770 5.10234 5.27643 5.32668 5.37728 5.41351 5.41653 5.45136 5.48487 5.50968 5.58126 5.63490 5.63855 5.73344 5.77007 5.81718 5.83439 5.91589 5.96106 6.06327 6.12462 6.13832 6.19367 6.20847 6.26518 6.26672 6.35151 6.44417 6.88058 6.98595 7.76814 7.85524 7.90047 8.10365 8.41838 8.82802 9.10684 9.65521 11.17546 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.004196 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.471120 B = 6671.506647 C = 7720.659363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.114 3.886 6 N -0.619 5.619 7 C 0.511 3.489 8 O -0.532 6.532 9 C -0.129 4.129 10 C 0.038 3.962 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.134 3.866 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.147 4.147 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 9.680 -2.401 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.008 4.008 6 N -0.353 5.353 7 C 0.302 3.698 8 O -0.407 6.407 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.030 3.970 20 C -0.176 4.176 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.412 9.674 -3.016 22.789 hybrid contribution 0.411 -0.387 0.909 1.070 sum -20.001 9.287 -2.107 22.153 Atomic orbital electron populations 1.21891 0.95499 1.01610 1.01437 1.21066 0.95527 0.96229 0.98617 1.21822 1.01269 0.95901 1.01334 1.22181 1.02047 0.95397 0.97571 1.21399 0.98652 0.91705 0.89088 1.48236 1.13178 1.58187 1.15683 1.21549 0.80101 0.76942 0.91252 1.90655 1.58276 1.56062 1.35733 1.21881 1.01821 0.99826 0.93373 1.18889 0.86530 0.97516 0.97017 1.21186 0.95386 1.40849 0.99094 0.92722 1.25013 0.97163 0.95954 0.96176 1.69989 1.06491 1.47367 1.29001 0.86667 0.78013 0.79727 0.83609 1.20258 1.21288 1.20262 1.21834 0.91025 0.96398 0.87779 1.22805 0.94261 1.00165 1.00354 1.22463 0.98066 0.95579 0.99945 1.22322 0.95364 0.96743 1.01533 1.22782 0.96092 0.98051 1.01632 0.92820 0.92988 0.92612 0.91107 0.92560 0.92933 0.92880 0.91460 0.91334 0.90670 0.90700 0.90534 0.90394 0.95766 0.96045 0.92925 0.88193 0.90839 0.91066 0.91265 0.91638 0.91790 0.91812 0.91114 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 37.16 0.33 -0.89 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.13 -1.64 4.65 -26.73 -0.12 -1.76 16 5 C 0.11 1.50 4.58 -4.04 -0.02 1.48 16 6 N -0.62 -9.28 2.39 -164.84 -0.39 -9.67 16 7 C 0.51 10.24 7.62 -10.98 -0.08 10.15 16 8 O -0.53 -12.83 15.63 5.55 0.09 -12.74 16 9 C -0.13 -2.71 3.97 -27.88 -0.11 -2.82 16 10 C 0.04 1.04 4.28 -27.88 -0.12 0.92 16 11 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.13 1.61 3.15 -66.81 -0.21 1.40 16 20 C -0.14 -1.36 6.34 -25.03 -0.16 -1.52 16 21 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 22 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 23 C -0.15 -1.53 6.34 -25.61 -0.16 -1.69 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.45 6.59 -51.93 -0.34 0.11 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 5.51 -51.93 -0.29 0.48 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.14 7.53 -51.93 -0.39 0.75 16 34 H 0.07 0.80 4.49 -51.93 -0.23 0.57 16 35 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 36 H 0.08 1.51 7.73 -51.93 -0.40 1.11 16 37 H 0.02 0.73 8.04 -51.93 -0.42 0.31 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.10 1.27 5.93 -51.93 -0.31 0.97 16 41 H 0.07 0.73 5.87 -51.93 -0.30 0.43 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.90 4.73 -51.93 -0.25 0.65 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -32.94 366.77 -9.19 -42.13 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.80 Total: -1.89 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.33 Total: -13.19 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.34 Total: -36.64 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.94 -9.19 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360338412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.611 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds