Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54919 * 29.32916 * 4 3 2 6 6 C 1.53001 * 117.51499 * 243.63241 * 4 3 2 7 7 C 1.52989 * 117.49910 * 175.00106 * 4 3 2 8 8 H 1.09006 * 117.50171 * 215.02432 * 7 4 3 9 9 C 1.50704 * 117.50283 * 0.02562 * 7 4 3 10 10 O 1.21280 * 119.99624 * 22.81298 * 9 7 4 11 11 N 1.34767 * 120.00307 * 202.81069 * 9 7 4 12 12 C 1.46506 * 119.99924 * 184.59446 * 11 9 7 13 13 C 1.50700 * 109.47096 * 83.15405 * 12 11 9 14 14 H 1.07998 * 120.00377 * 356.49202 * 13 12 11 15 15 C 1.37878 * 119.99888 * 176.48561 * 13 12 11 16 16 N 1.31509 * 120.00144 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00132 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46893 * 89.99719 * 17 15 13 19 19 H 1.48498 * 109.47031 * 330.00388 * 17 15 13 20 20 H 1.48495 * 109.47496 * 209.99782 * 17 15 13 21 21 C 1.46499 * 120.00190 * 4.58956 * 11 9 7 22 22 C 1.53001 * 109.46701 * 88.23211 * 21 11 9 23 23 C 1.53004 * 109.47306 * 65.90211 * 22 21 11 24 24 C 1.53009 * 109.47022 * 185.89563 * 22 21 11 25 25 C 1.52993 * 109.47557 * 305.89432 * 22 21 11 26 26 H 1.09003 * 109.47639 * 299.99873 * 1 2 3 27 27 H 1.08999 * 109.47129 * 60.00388 * 1 2 3 28 28 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47267 * 239.99447 * 2 1 3 30 30 H 1.09007 * 109.47145 * 119.99928 * 2 1 3 31 31 H 1.09002 * 109.47111 * 59.99960 * 3 2 1 32 32 H 1.08999 * 109.46777 * 299.99827 * 3 2 1 33 33 H 1.08999 * 117.49889 * 145.03509 * 6 4 3 34 34 H 1.08997 * 117.50360 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47061 * 323.15307 * 12 11 9 36 36 H 1.09002 * 109.47010 * 203.15072 * 12 11 9 37 37 H 0.97001 * 120.00484 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47240 * 208.23008 * 21 11 9 39 39 H 1.08995 * 109.47089 * 328.23644 * 21 11 9 40 40 H 1.08997 * 109.47653 * 59.98981 * 23 22 21 41 41 H 1.08993 * 109.47629 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.46467 * 299.99514 * 23 22 21 43 43 H 1.08993 * 109.46851 * 60.00001 * 24 22 21 44 44 H 1.09002 * 109.46857 * 180.02562 * 24 22 21 45 45 H 1.09002 * 109.47268 * 299.99981 * 24 22 21 46 46 H 1.09004 * 109.47104 * 65.05695 * 25 22 21 47 47 H 1.09000 * 109.47326 * 185.05226 * 25 22 21 48 48 H 1.08997 * 109.47112 * 305.06017 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2763 2.0454 1.2166 7 6 4.2764 2.7944 -0.1175 8 1 5.2114 2.8266 -0.6770 9 6 3.4121 4.0243 -0.2250 10 8 2.2712 4.0013 0.1857 11 7 3.9069 5.1495 -0.7776 12 6 3.1024 6.3738 -0.7913 13 6 3.2464 7.0844 0.5298 14 1 3.8285 6.6380 1.3225 15 6 2.6350 8.3044 0.7266 16 7 2.7611 8.9248 1.8793 17 14 1.6289 9.0770 -0.6446 18 1 0.2167 8.6312 -0.5339 19 1 2.1787 8.6574 -1.9587 20 1 1.6913 10.5563 -0.5314 21 6 5.2492 5.1484 -1.3644 22 6 5.1638 4.7245 -2.8320 23 6 4.3973 5.7847 -3.6253 24 6 6.5755 4.5810 -3.4044 25 6 4.4335 3.3840 -2.9341 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.2114 1.5847 1.5351 34 1 3.6511 2.4417 2.0166 35 1 2.0553 6.1187 -0.9544 36 1 3.4468 7.0259 -1.5940 37 1 2.3307 9.7830 2.0179 38 1 5.6748 6.1498 -1.2996 39 1 5.8830 4.4483 -0.8203 40 1 4.9175 6.7398 -3.5526 41 1 4.3360 5.4826 -4.6708 42 1 3.3916 5.8869 -3.2176 43 1 7.1216 3.8258 -2.8392 44 1 6.5146 4.2795 -4.4501 45 1 7.0959 5.5361 -3.3317 46 1 3.4001 3.5076 -2.6100 47 1 4.4511 3.0384 -3.9677 48 1 4.9287 2.6511 -2.2973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360398172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -30.688882 kcal Electronic energy + Delta-G solvation = -23987.618400 eV Core-core repulsion = 20849.879426 eV Total energy + Delta-G solvation = -3137.738974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03502 -37.64579 -36.30489 -33.88941 -33.65969 -32.28997 -28.79869 -27.28577 -27.14133 -27.00186 -25.57888 -23.90128 -21.89841 -21.31648 -20.40918 -19.25352 -17.54957 -16.94106 -16.80792 -15.38673 -15.13343 -14.95868 -14.33305 -14.22847 -14.07748 -13.82093 -13.44691 -13.24649 -12.74639 -12.52782 -12.40987 -12.30474 -12.12288 -12.07503 -11.76951 -11.61369 -11.38652 -11.35500 -11.11836 -10.97050 -10.86065 -10.82542 -10.72260 -10.54473 -10.44038 -10.28315 -10.02361 -9.82360 -9.62108 -9.47398 -8.78290 -8.55982 -7.58177 -6.05558 -4.03224 3.16581 3.29504 3.35191 3.36936 3.85182 4.26045 4.41234 4.74835 4.90759 4.95743 4.99013 5.14059 5.20998 5.24453 5.26291 5.30792 5.38501 5.43564 5.62857 5.66335 5.67107 5.73018 5.86970 5.91861 5.92781 5.95047 5.96848 6.03292 6.05997 6.09626 6.10989 6.17828 6.26308 6.32360 6.34842 6.37125 6.49863 6.54613 6.56988 6.76317 6.82240 7.02193 7.44488 7.65294 8.37359 8.51548 8.98592 9.11383 9.55246 11.08131 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.006452 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.417127 B = 4339.022754 C = 5550.221486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.119 4.119 5 H 0.104 0.896 6 C -0.152 4.152 7 C -0.193 4.193 8 H 0.121 0.879 9 C 0.543 3.457 10 O -0.536 6.536 11 N -0.588 5.588 12 C 0.217 3.783 13 C -0.523 4.523 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.265 1.265 20 H -0.285 1.285 21 C 0.121 3.879 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -14.873 -9.503 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.137 4.137 5 H 0.122 0.878 6 C -0.190 4.190 7 C -0.214 4.214 8 H 0.139 0.861 9 C 0.330 3.670 10 O -0.414 6.414 11 N -0.318 5.318 12 C 0.097 3.903 13 C -0.562 4.562 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.700 3.300 18 H -0.200 1.200 19 H -0.190 1.190 20 H -0.211 1.211 21 C -0.004 4.004 22 C -0.090 4.090 23 C -0.200 4.200 24 C -0.195 4.195 25 C -0.203 4.203 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.709 -14.669 -9.185 17.937 hybrid contribution -0.313 0.710 -0.639 1.005 sum 4.396 -13.960 -9.825 17.627 Atomic orbital electron populations 1.21752 0.96143 1.00849 1.02135 1.21557 0.95690 0.97492 1.01190 1.21208 0.91481 0.95236 1.04072 1.22325 0.95893 0.93952 1.01578 0.87812 1.23060 1.02446 1.02211 0.91248 1.22710 1.02084 0.92971 1.03658 0.86138 1.19258 0.86878 0.83138 0.77709 1.90650 1.18674 1.83602 1.48475 1.47722 1.16124 1.11055 1.56861 1.19687 0.91311 0.81488 0.97832 1.21362 1.32644 1.03711 0.98488 0.90849 1.24845 0.95891 0.96803 0.95486 1.69896 1.44437 1.16097 1.23348 0.86900 0.81483 0.78613 0.83004 1.20009 1.19001 1.21111 1.21567 0.84945 1.02515 0.91338 1.21030 0.95590 0.96152 0.96269 1.21934 1.01177 0.98037 0.98817 1.21802 0.95567 1.01664 1.00425 1.22093 1.01061 0.96121 1.00989 0.92613 0.92832 0.93312 0.92697 0.92383 0.90151 0.91555 0.88580 0.88024 0.95214 0.94756 0.92654 0.90059 0.91232 0.92616 0.93362 0.91822 0.92798 0.92766 0.92501 0.92274 0.93290 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.12 -1.42 5.89 -26.73 -0.16 -1.57 16 3 C -0.08 -1.21 3.77 -26.73 -0.10 -1.32 16 4 C -0.12 -1.58 5.73 -90.62 -0.52 -2.10 16 5 H 0.10 1.13 8.07 -51.93 -0.42 0.71 16 6 C -0.15 -2.13 9.81 -26.73 -0.26 -2.39 16 7 C -0.19 -2.93 3.72 -91.77 -0.34 -3.27 16 8 H 0.12 1.57 4.30 -51.93 -0.22 1.34 16 9 C 0.54 10.96 5.52 -10.99 -0.06 10.90 16 10 O -0.54 -12.83 13.32 5.56 0.07 -12.76 16 11 N -0.59 -11.93 2.01 -175.06 -0.35 -12.28 16 12 C 0.22 5.28 3.11 -5.19 -0.02 5.26 16 13 C -0.52 -15.13 9.88 -34.44 -0.34 -15.47 16 14 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 17 Si 0.87 21.67 27.54 -169.99 -4.68 16.99 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.16 6.44 56.52 0.36 -5.79 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.12 1.92 4.42 -4.04 -0.02 1.90 16 22 C -0.09 -1.17 0.85 -154.50 -0.13 -1.31 16 23 C -0.14 -2.03 7.56 37.16 0.28 -1.75 16 24 C -0.14 -1.43 8.47 37.16 0.31 -1.11 16 25 C -0.15 -1.87 6.93 37.15 0.26 -1.61 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.40 6.89 -51.93 -0.36 1.04 16 32 H 0.07 1.10 7.62 -51.93 -0.40 0.70 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.64 8.03 -51.93 -0.42 1.23 16 35 H 0.03 0.78 7.18 -51.93 -0.37 0.41 16 36 H 0.03 0.80 5.29 -51.93 -0.27 0.52 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 39 H 0.07 0.98 6.10 -51.93 -0.32 0.66 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.07 6.14 -51.93 -0.32 0.75 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.92 6.58 -51.93 -0.34 0.57 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.71 5.28 -51.93 -0.27 0.44 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -32.37 362.15 -8.35 -40.72 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.80 Total: 2.26 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.82 Total: -13.19 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.42 Total: -39.49 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.68 Total: 16.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.37 -8.35 -40.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360398172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.029 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds