Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 C 1.53004 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54919 * 29.32916 * 4 3 2 6 6 C 1.53001 * 117.51499 * 243.63241 * 4 3 2 7 7 C 1.52989 * 117.49910 * 175.00106 * 4 3 2 8 8 H 1.09006 * 117.50171 * 215.02432 * 7 4 3 9 9 C 1.50704 * 117.50283 * 0.02562 * 7 4 3 10 10 O 1.21280 * 119.99624 * 22.81298 * 9 7 4 11 11 N 1.34767 * 120.00307 * 202.81069 * 9 7 4 12 12 C 1.46506 * 119.99924 * 184.59446 * 11 9 7 13 13 C 1.50700 * 109.47096 * 83.15405 * 12 11 9 14 14 H 1.07998 * 120.00377 * 356.49202 * 13 12 11 15 15 C 1.37878 * 119.99888 * 176.48561 * 13 12 11 16 16 N 1.31509 * 120.00144 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00132 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46893 * 89.99719 * 17 15 13 19 19 H 1.48498 * 109.47031 * 330.00388 * 17 15 13 20 20 H 1.48495 * 109.47496 * 209.99782 * 17 15 13 21 21 C 1.46499 * 120.00190 * 4.58956 * 11 9 7 22 22 C 1.53001 * 109.46701 * 88.23211 * 21 11 9 23 23 C 1.53004 * 109.47306 * 65.90211 * 22 21 11 24 24 C 1.53009 * 109.47022 * 185.89563 * 22 21 11 25 25 C 1.52993 * 109.47557 * 305.89432 * 22 21 11 26 26 H 1.09003 * 109.47639 * 299.99873 * 1 2 3 27 27 H 1.08999 * 109.47129 * 60.00388 * 1 2 3 28 28 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47267 * 239.99447 * 2 1 3 30 30 H 1.09007 * 109.47145 * 119.99928 * 2 1 3 31 31 H 1.09002 * 109.47111 * 59.99960 * 3 2 1 32 32 H 1.08999 * 109.46777 * 299.99827 * 3 2 1 33 33 H 1.08999 * 117.49889 * 145.03509 * 6 4 3 34 34 H 1.08997 * 117.50360 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47061 * 323.15307 * 12 11 9 36 36 H 1.09002 * 109.47010 * 203.15072 * 12 11 9 37 37 H 0.97001 * 120.00484 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47240 * 208.23008 * 21 11 9 39 39 H 1.08995 * 109.47089 * 328.23644 * 21 11 9 40 40 H 1.08997 * 109.47653 * 59.98981 * 23 22 21 41 41 H 1.08993 * 109.47629 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.46467 * 299.99514 * 23 22 21 43 43 H 1.08993 * 109.46851 * 60.00001 * 24 22 21 44 44 H 1.09002 * 109.46857 * 180.02562 * 24 22 21 45 45 H 1.09002 * 109.47268 * 299.99981 * 24 22 21 46 46 H 1.09004 * 109.47104 * 65.05695 * 25 22 21 47 47 H 1.09000 * 109.47326 * 185.05226 * 25 22 21 48 48 H 1.08997 * 109.47112 * 305.06017 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2763 2.0454 1.2166 7 6 4.2764 2.7944 -0.1175 8 1 5.2114 2.8266 -0.6770 9 6 3.4121 4.0243 -0.2250 10 8 2.2712 4.0013 0.1857 11 7 3.9069 5.1495 -0.7776 12 6 3.1024 6.3738 -0.7913 13 6 3.2464 7.0844 0.5298 14 1 3.8285 6.6380 1.3225 15 6 2.6350 8.3044 0.7266 16 7 2.7611 8.9248 1.8793 17 14 1.6289 9.0770 -0.6446 18 1 0.2167 8.6312 -0.5339 19 1 2.1787 8.6574 -1.9587 20 1 1.6913 10.5563 -0.5314 21 6 5.2492 5.1484 -1.3644 22 6 5.1638 4.7245 -2.8320 23 6 4.3973 5.7847 -3.6253 24 6 6.5755 4.5810 -3.4044 25 6 4.4335 3.3840 -2.9341 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.2114 1.5847 1.5351 34 1 3.6511 2.4417 2.0166 35 1 2.0553 6.1187 -0.9544 36 1 3.4468 7.0259 -1.5940 37 1 2.3307 9.7830 2.0179 38 1 5.6748 6.1498 -1.2996 39 1 5.8830 4.4483 -0.8203 40 1 4.9175 6.7398 -3.5526 41 1 4.3360 5.4826 -4.6708 42 1 3.3916 5.8869 -3.2176 43 1 7.1216 3.8258 -2.8392 44 1 6.5146 4.2795 -4.4501 45 1 7.0959 5.5361 -3.3317 46 1 3.4001 3.5076 -2.6100 47 1 4.4511 3.0384 -3.9677 48 1 4.9287 2.6511 -2.2973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360398172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -49.253819 kcal Electronic energy + Delta-G solvation = -23988.423436 eV Core-core repulsion = 20849.879426 eV Total energy + Delta-G solvation = -3138.544010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46715 -38.86213 -37.67906 -35.59765 -34.74951 -34.32393 -30.65650 -28.47267 -28.12586 -28.07768 -26.92881 -25.57892 -23.29717 -22.61690 -21.59808 -20.48290 -19.18695 -18.86824 -18.19627 -17.04471 -16.56597 -16.15718 -15.88773 -15.48363 -15.25980 -15.15581 -14.77954 -14.64857 -14.31865 -13.96618 -13.72303 -13.64714 -13.43103 -13.26334 -13.08884 -13.01325 -12.66684 -12.59851 -12.47802 -12.40707 -12.17783 -11.93806 -11.93297 -11.84126 -11.72511 -11.69705 -11.56317 -11.37338 -10.99346 -10.85669 -10.76615 -10.39917 -9.26650 -8.36185 -6.40241 1.27522 1.31410 1.39883 1.71323 2.27157 2.34163 2.97784 3.01359 3.59408 3.74328 3.87760 3.90386 3.98945 4.13460 4.15244 4.25527 4.34641 4.40488 4.51520 4.60362 4.64579 4.69786 4.80743 4.83298 4.85772 4.89065 4.93039 4.94119 4.98146 5.02645 5.03872 5.10271 5.11930 5.14256 5.19737 5.25865 5.37234 5.37892 5.43730 5.45007 5.48752 5.56865 5.66026 5.72900 6.25729 6.60577 6.80151 7.20445 7.54020 8.81232 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.006452 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.417127 B = 4339.022754 C = 5550.221486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.081 4.081 4 C -0.100 4.100 5 H 0.148 0.852 6 C -0.151 4.151 7 C -0.201 4.201 8 H 0.153 0.847 9 C 0.531 3.469 10 O -0.589 6.589 11 N -0.594 5.594 12 C 0.233 3.767 13 C -0.532 4.532 14 H 0.024 0.976 15 C 0.012 3.988 16 N -0.946 5.946 17 Si 0.943 3.057 18 H -0.277 1.277 19 H -0.238 1.238 20 H -0.272 1.272 21 C 0.113 3.887 22 C -0.083 4.083 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.140 4.140 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.136 0.864 34 H 0.067 0.933 35 H 0.006 0.994 36 H 0.051 0.949 37 H 0.268 0.732 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.068 0.932 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -17.149 -12.284 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.118 4.118 4 C -0.118 4.118 5 H 0.166 0.834 6 C -0.188 4.188 7 C -0.221 4.221 8 H 0.170 0.830 9 C 0.321 3.679 10 O -0.470 6.470 11 N -0.323 5.323 12 C 0.111 3.889 13 C -0.570 4.570 14 H 0.042 0.958 15 C -0.186 4.186 16 N -0.586 5.586 17 Si 0.766 3.234 18 H -0.203 1.203 19 H -0.162 1.162 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.084 4.084 23 C -0.202 4.202 24 C -0.188 4.188 25 C -0.197 4.197 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.683 -16.963 -11.989 21.821 hybrid contribution -0.923 1.410 0.332 1.718 sum 5.760 -15.553 -11.656 20.271 Atomic orbital electron populations 1.21776 0.96381 1.01964 1.00985 1.21516 0.95537 0.95223 1.02843 1.21102 0.93056 0.96807 1.00883 1.22508 0.94700 0.93850 1.00776 0.83432 1.23150 1.03738 1.01858 0.90086 1.22684 1.02614 0.91325 1.05476 0.83014 1.20210 0.86906 0.84465 0.76308 1.90625 1.21195 1.84690 1.50476 1.47779 1.17458 1.09821 1.57256 1.19252 0.91016 0.83166 0.95508 1.21589 1.31940 1.04168 0.99337 0.95758 1.25820 0.97063 0.97377 0.98348 1.70050 1.45873 1.16851 1.25851 0.85781 0.79112 0.77971 0.80527 1.20270 1.16152 1.19724 1.21894 0.82702 1.02759 0.93608 1.20992 0.97641 0.95897 0.93846 1.21948 0.99395 0.98653 1.00166 1.21757 0.93160 1.02470 1.01406 1.22045 0.99009 0.96186 1.02496 0.94210 0.93669 0.90966 0.90366 0.91118 0.94196 0.94143 0.84604 0.91471 0.97561 0.93149 0.92304 0.91279 0.88913 0.92794 0.91170 0.95091 0.91019 0.91161 0.92409 0.95685 0.91265 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.70 16 2 C -0.11 -2.45 5.89 30.59 0.18 -2.27 16 3 C -0.08 -2.40 3.77 30.60 0.12 -2.29 16 4 C -0.10 -2.43 5.73 -10.80 -0.06 -2.50 16 5 H 0.15 2.40 8.07 -2.39 -0.02 2.38 16 6 C -0.15 -4.01 9.81 30.60 0.30 -3.71 16 7 C -0.20 -5.80 3.72 -11.54 -0.04 -5.85 16 8 H 0.15 3.38 4.30 -2.38 -0.01 3.37 16 9 C 0.53 22.22 5.52 87.66 0.48 22.70 16 10 O -0.59 -30.24 13.32 -3.03 -0.04 -30.28 16 11 N -0.59 -24.79 2.01 -826.16 -1.66 -26.46 16 12 C 0.23 11.76 3.11 85.63 0.27 12.03 16 13 C -0.53 -32.43 9.88 25.60 0.25 -32.18 16 14 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 15 C 0.01 0.71 5.47 84.66 0.46 1.17 16 16 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 17 Si 0.94 45.73 27.54 68.60 1.89 47.62 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 19 H -0.24 -10.41 6.44 99.48 0.64 -9.77 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.11 3.49 4.42 86.38 0.38 3.87 16 22 C -0.08 -1.98 0.85 -52.18 -0.04 -2.02 16 23 C -0.14 -3.89 7.56 71.98 0.54 -3.35 16 24 C -0.13 -2.17 8.47 71.99 0.61 -1.56 16 25 C -0.14 -3.21 6.93 71.98 0.50 -2.71 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.04 1.49 6.89 -2.39 -0.02 1.47 16 32 H 0.04 1.39 7.62 -2.39 -0.02 1.38 16 33 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 35 H 0.01 0.35 7.18 -2.39 -0.02 0.33 16 36 H 0.05 2.37 5.29 -2.39 -0.01 2.36 16 37 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 38 H 0.07 2.28 8.06 -2.39 -0.02 2.27 16 39 H 0.09 2.40 6.10 -2.39 -0.01 2.38 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.03 1.02 6.14 -2.39 -0.01 1.00 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.02 0.74 6.58 -2.38 -0.02 0.73 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 1.49 5.28 -2.39 -0.01 1.48 16 Total: -1.00 -77.97 362.15 5.98 -71.99 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.84 Total: 19.51 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.66 Total: -21.36 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.37 Total: -87.48 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.04 Total: -30.28 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.89 Total: 47.62 kcal Total: -77.97 5.98 -71.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360398172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds