Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.56250 * 330.68949 * 4 3 2 6 6 C 1.52999 * 117.50010 * 116.38086 * 4 3 2 7 7 C 1.53004 * 60.00146 * 107.48982 * 6 4 3 8 8 H 1.08998 * 117.51746 * 252.51937 * 7 6 4 9 9 C 1.50701 * 117.49534 * 107.48934 * 7 6 4 10 10 O 1.21282 * 120.00027 * 291.37174 * 9 7 6 11 11 N 1.34775 * 119.99714 * 111.38172 * 9 7 6 12 12 C 1.46502 * 120.00005 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47310 * 270.00108 * 12 11 9 14 14 H 1.07997 * 119.99940 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00037 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99860 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99877 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46889 * 90.00336 * 17 15 13 19 19 H 1.48502 * 109.47240 * 209.99902 * 17 15 13 20 20 H 1.48500 * 109.47486 * 330.00239 * 17 15 13 21 21 C 1.46499 * 120.00337 * 359.97438 * 11 9 7 22 22 C 1.53000 * 109.46840 * 270.00307 * 21 11 9 23 23 C 1.52996 * 109.47328 * 59.99969 * 22 21 11 24 24 C 1.53001 * 109.46886 * 180.02562 * 22 21 11 25 25 C 1.53002 * 109.47233 * 299.99500 * 22 21 11 26 26 H 1.09009 * 109.47069 * 59.99863 * 1 2 3 27 27 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46901 * 300.00128 * 1 2 3 29 29 H 1.09003 * 109.47250 * 240.00317 * 2 1 3 30 30 H 1.08998 * 109.47110 * 120.00618 * 2 1 3 31 31 H 1.08997 * 109.46919 * 60.00438 * 3 2 1 32 32 H 1.08995 * 109.47698 * 299.99803 * 3 2 1 33 33 H 1.09001 * 117.50058 * 0.02562 * 6 4 3 34 34 H 1.08999 * 117.49868 * 214.97681 * 6 4 3 35 35 H 1.08998 * 109.46888 * 29.99915 * 12 11 9 36 36 H 1.08994 * 109.47490 * 149.99977 * 12 11 9 37 37 H 0.97000 * 119.99433 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47391 * 149.99977 * 21 11 9 39 39 H 1.09001 * 109.46813 * 30.00033 * 21 11 9 40 40 H 1.08992 * 109.47554 * 59.99639 * 23 22 21 41 41 H 1.09004 * 109.47108 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.46870 * 299.99783 * 23 22 21 43 43 H 1.09002 * 109.47508 * 59.99571 * 24 22 21 44 44 H 1.09000 * 109.47437 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.47109 * 299.99380 * 24 22 21 46 46 H 1.09000 * 109.46986 * 60.00203 * 25 22 21 47 47 H 1.08993 * 109.47662 * 180.02562 * 25 22 21 48 48 H 1.09002 * 109.47075 * 300.00932 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0405 0.5849 0.4804 6 6 4.2760 2.0456 -1.2166 7 6 4.2765 2.7944 0.1177 8 1 3.6513 3.6838 0.1963 9 6 5.5697 2.8385 0.8902 10 8 6.0123 1.8259 1.3900 11 7 6.2342 4.0032 1.0259 12 6 7.4911 4.0462 1.7774 13 6 7.1997 4.3341 3.2276 14 1 6.1803 4.4717 3.5566 15 6 8.2345 4.4218 4.1345 16 7 9.4759 4.2537 3.7340 17 14 7.8733 4.7794 5.9320 18 1 7.6731 3.5009 6.6605 19 1 9.0161 5.5158 6.5296 20 1 6.6437 5.6057 6.0351 21 6 5.6997 5.2262 0.4220 22 6 6.2470 5.3745 -0.9991 23 6 5.8254 4.1656 -1.8368 24 6 5.6894 6.6521 -1.6296 25 6 7.7742 5.4545 -0.9517 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.6504 2.4429 -2.0160 34 1 5.2109 1.5850 -1.5356 35 1 7.9981 3.0851 1.6926 36 1 8.1299 4.8310 1.3724 37 1 10.2039 4.3158 4.3720 38 1 6.0001 6.0874 1.0188 39 1 4.6117 5.1692 0.3882 40 1 4.7375 4.1086 -1.8706 41 1 6.2150 4.2715 -2.8493 42 1 6.2231 3.2557 -1.3874 43 1 5.9901 7.5131 -1.0327 44 1 6.0789 6.7576 -2.6422 45 1 4.6013 6.5956 -1.6634 46 1 8.1719 4.5445 -0.5023 47 1 8.1642 5.5606 -1.9639 48 1 8.0746 6.3157 -0.3548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360398174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -36.748584 kcal Electronic energy + Delta-G solvation = -23604.758418 eV Core-core repulsion = 20466.756676 eV Total energy + Delta-G solvation = -3138.001742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93809 -37.42610 -36.57251 -34.06265 -33.57619 -32.30025 -28.39523 -27.54638 -26.88335 -26.67181 -25.48746 -24.05426 -22.03218 -21.58927 -20.38500 -19.06852 -17.84874 -16.71867 -16.35234 -15.44770 -15.22382 -14.78127 -14.46726 -14.33807 -14.10645 -13.72289 -13.31421 -13.15575 -13.08012 -12.57291 -12.39603 -12.17406 -12.02409 -11.89024 -11.72824 -11.41307 -11.31829 -11.25061 -11.21904 -10.94104 -10.89830 -10.81506 -10.76232 -10.52439 -10.41893 -10.20236 -10.06114 -9.74045 -9.69760 -9.52303 -8.79482 -8.38646 -7.54604 -6.00624 -4.04697 3.24995 3.33100 3.39157 3.41990 3.92461 4.19049 4.47602 4.70120 4.92208 4.95247 5.05059 5.08660 5.13528 5.18134 5.27160 5.33084 5.39004 5.48234 5.52316 5.70135 5.73955 5.76416 5.78096 5.81081 5.83727 5.86897 5.99312 6.00703 6.04473 6.13682 6.15840 6.22004 6.22955 6.25557 6.31553 6.40303 6.47646 6.53655 6.66649 6.78154 7.16565 7.49329 7.63193 7.96650 8.29219 8.52006 8.95341 9.19644 9.60270 11.07171 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.005492 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.466572 B = 5096.954484 C = 6629.365012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.130 4.130 5 H 0.115 0.885 6 C -0.146 4.146 7 C -0.181 4.181 8 H 0.116 0.884 9 C 0.535 3.465 10 O -0.545 6.545 11 N -0.588 5.588 12 C 0.243 3.757 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.123 3.877 22 C -0.087 4.087 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.141 4.141 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.044 0.956 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 0.092 -12.962 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.148 4.148 5 H 0.133 0.867 6 C -0.183 4.183 7 C -0.202 4.202 8 H 0.134 0.866 9 C 0.321 3.679 10 O -0.423 6.423 11 N -0.318 5.318 12 C 0.124 3.876 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.002 4.002 22 C -0.088 4.088 23 C -0.202 4.202 24 C -0.194 4.194 25 C -0.198 4.198 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.893 -0.424 -12.603 18.034 hybrid contribution -0.052 0.442 1.095 1.182 sum -12.945 0.017 -11.508 17.320 Atomic orbital electron populations 1.21782 0.96150 1.01395 1.01643 1.21500 0.95333 0.96840 1.02301 1.21204 0.92515 0.96961 1.01813 1.22538 0.94173 0.96569 1.01564 0.86735 1.23156 1.02540 1.02326 0.90292 1.22497 0.98778 0.97490 1.01439 0.86650 1.19361 0.84460 0.83753 0.80277 1.90655 1.68518 1.33975 1.49165 1.48067 1.25462 1.06499 1.51756 1.19385 0.79593 0.98581 0.90037 1.21470 0.93240 1.48420 0.93228 0.92592 1.24916 0.94925 0.95328 0.98893 1.69933 0.98628 1.50041 1.34843 0.86532 0.77714 0.78364 0.85005 1.20608 1.21188 1.19972 1.21516 0.97406 0.88974 0.92256 1.21002 0.96645 0.95350 0.95834 1.22301 1.01081 0.98148 0.98719 1.21796 1.00308 0.97024 1.00277 1.21951 0.94212 1.03084 1.00597 0.92938 0.92934 0.92791 0.91938 0.91784 0.91633 0.91989 0.88384 0.88481 0.94226 0.94181 0.92807 0.90263 0.91709 0.92171 0.93591 0.91977 0.92611 0.92881 0.92987 0.91380 0.93726 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.21 5.89 -26.73 -0.16 -1.37 16 3 C -0.09 -0.95 5.50 -26.73 -0.15 -1.10 16 4 C -0.13 -1.79 5.25 -90.62 -0.48 -2.27 16 5 H 0.11 1.85 7.60 -51.93 -0.39 1.46 16 6 C -0.15 -1.83 6.53 -26.73 -0.17 -2.01 16 7 C -0.18 -2.77 3.53 -91.77 -0.32 -3.10 16 8 H 0.12 1.58 6.44 -51.93 -0.33 1.24 16 9 C 0.53 11.28 6.07 -10.99 -0.07 11.21 16 10 O -0.54 -14.03 15.84 5.56 0.09 -13.94 16 11 N -0.59 -12.41 1.98 -175.06 -0.35 -12.76 16 12 C 0.24 6.33 4.07 -5.19 -0.02 6.31 16 13 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 17 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.12 2.04 4.55 -4.04 -0.02 2.02 16 22 C -0.09 -1.22 0.84 -154.51 -0.13 -1.35 16 23 C -0.15 -1.90 6.01 37.16 0.22 -1.67 16 24 C -0.14 -1.53 8.47 37.16 0.31 -1.22 16 25 C -0.14 -2.22 7.22 37.16 0.27 -1.95 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.10 0.98 7.53 -51.93 -0.39 0.59 16 34 H 0.10 1.32 7.38 -51.93 -0.38 0.94 16 35 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 36 H 0.04 1.04 6.05 -51.93 -0.31 0.73 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.06 0.93 5.99 -51.93 -0.31 0.62 16 40 H 0.06 0.69 5.53 -51.93 -0.29 0.40 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.96 4.69 -51.93 -0.24 0.72 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -32.05 365.00 -8.60 -40.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.80 Total: 0.53 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.76 Total: -11.09 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.39 Total: -38.78 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.05 -8.60 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360398174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.905 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds