Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52996 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.54935 * 330.72271 * 4 3 2 6 6 C 1.53003 * 117.50033 * 116.38625 * 4 3 2 7 7 C 1.53007 * 60.02947 * 107.50295 * 6 4 3 8 8 H 1.08999 * 117.49636 * 252.51997 * 7 6 4 9 9 C 1.50697 * 117.49712 * 107.50051 * 7 6 4 10 10 O 1.21281 * 120.00231 * 296.01100 * 9 7 6 11 11 N 1.34780 * 119.99823 * 116.00488 * 9 7 6 12 12 C 1.46499 * 120.00173 * 186.18046 * 11 9 7 13 13 C 1.50704 * 109.47137 * 89.99939 * 12 11 9 14 14 H 1.07995 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99600 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99657 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00377 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47422 * 89.99948 * 17 15 13 19 19 H 1.48500 * 109.47239 * 209.99794 * 17 15 13 20 20 H 1.48502 * 109.47118 * 329.99743 * 17 15 13 21 21 C 1.46507 * 119.99997 * 6.18202 * 11 9 7 22 22 C 1.52993 * 109.47034 * 184.88566 * 21 11 9 23 23 C 1.52993 * 109.46889 * 304.88726 * 21 11 9 24 24 C 1.52991 * 109.46943 * 64.88620 * 21 11 9 25 25 C 1.53001 * 109.47422 * 56.40403 * 24 21 11 26 26 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47583 * 300.00316 * 1 2 3 28 28 H 1.08998 * 109.47129 * 60.00229 * 1 2 3 29 29 H 1.09002 * 109.46926 * 239.99343 * 2 1 3 30 30 H 1.08998 * 109.47129 * 119.99771 * 2 1 3 31 31 H 1.08997 * 109.47282 * 59.99763 * 3 2 1 32 32 H 1.09008 * 109.46847 * 299.99814 * 3 2 1 33 33 H 1.08995 * 117.50027 * 215.00474 * 6 4 3 34 34 H 1.08996 * 117.49805 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47144 * 210.00619 * 12 11 9 36 36 H 1.09001 * 109.46942 * 329.99977 * 12 11 9 37 37 H 0.97001 * 120.00334 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.47528 * 59.99734 * 22 21 11 39 39 H 1.09003 * 109.47320 * 180.02562 * 22 21 11 40 40 H 1.09003 * 109.47246 * 300.00408 * 22 21 11 41 41 H 1.09000 * 109.47553 * 59.99500 * 23 21 11 42 42 H 1.09003 * 109.47336 * 179.97438 * 23 21 11 43 43 H 1.09004 * 109.47359 * 299.99990 * 23 21 11 44 44 H 1.08993 * 109.47183 * 176.40406 * 24 21 11 45 45 H 1.09007 * 109.47632 * 296.40594 * 24 21 11 46 46 H 1.09004 * 109.47523 * 179.97438 * 25 24 21 47 47 H 1.09005 * 109.47109 * 299.99759 * 25 24 21 48 48 H 1.08996 * 109.47228 * 59.99755 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0398 0.5847 0.4819 6 6 4.2769 2.0454 -1.2149 7 6 4.2770 2.7949 0.1190 8 1 3.6519 3.6845 0.1965 9 6 5.5698 2.8392 0.8921 10 8 6.0556 1.8139 1.3207 11 7 6.1863 4.0183 1.1072 12 6 7.5078 4.0495 1.7388 13 6 8.5742 3.9728 0.6767 14 1 8.2954 3.9078 -0.3646 15 6 9.9057 3.9867 1.0344 16 7 10.8363 3.9192 0.1076 17 14 10.3878 4.0999 2.8355 18 1 10.5059 2.7328 3.4033 19 1 11.6918 4.8001 2.9558 20 1 9.3490 4.8569 3.5794 21 6 5.5349 5.2688 0.7093 22 6 6.4892 6.4401 0.9504 23 6 5.1713 5.2045 -0.7754 24 6 4.2640 5.4677 1.5375 25 6 4.6161 5.4423 3.0262 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 5.2119 1.5845 -1.5333 34 1 3.6521 2.4425 -2.0148 35 1 7.6203 4.9769 2.3004 36 1 7.6072 3.2008 2.4154 37 1 11.7730 3.9294 0.3592 38 1 7.3948 6.2984 0.3604 39 1 6.0044 7.3706 0.6548 40 1 6.7483 6.4859 2.0082 41 1 4.4915 4.3699 -0.9472 42 1 4.6862 6.1347 -1.0714 43 1 6.0768 5.0627 -1.3655 44 1 3.8137 6.4281 1.2870 45 1 3.5578 4.6669 1.3175 46 1 3.7107 5.5844 3.6163 47 1 5.0664 4.4817 3.2768 48 1 5.3222 6.2430 3.2463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362171586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = -15.694132 kcal Electronic energy + Delta-G solvation = -23963.606718 eV Core-core repulsion = 20826.517965 eV Total energy + Delta-G solvation = -3137.088753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22482 -37.57102 -36.45335 -33.97707 -33.07328 -31.75811 -30.04676 -28.96426 -27.33962 -26.48331 -23.86300 -23.25595 -22.00963 -21.60025 -20.69076 -19.97933 -17.90959 -16.94983 -16.02506 -15.70695 -15.23735 -14.88416 -14.55007 -14.14615 -14.02572 -13.62399 -13.49665 -13.27979 -12.83144 -12.74507 -12.48680 -12.18235 -12.14135 -12.01085 -11.81158 -11.46947 -11.33088 -11.28076 -11.23247 -11.11580 -10.95928 -10.87909 -10.59170 -10.55902 -10.34068 -10.16024 -10.07590 -9.87157 -9.51041 -9.42428 -8.92818 -8.55011 -7.59008 -6.06092 -4.03312 3.18571 3.30222 3.36268 3.38853 3.75390 4.19972 4.41931 4.62285 4.89275 4.92119 4.98630 5.06934 5.14914 5.20980 5.26028 5.27855 5.30539 5.49453 5.53141 5.58212 5.66480 5.73154 5.76291 5.81326 5.85248 5.88926 5.95725 6.02646 6.06667 6.13341 6.17434 6.20220 6.24435 6.28042 6.34263 6.37444 6.49503 6.52190 6.68441 6.85693 6.93428 7.03664 7.47801 7.66073 8.38349 8.52074 8.97480 9.09528 9.55404 11.07227 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.005088 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.173605 B = 5501.959316 C = 6013.472828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.129 4.129 5 H 0.115 0.885 6 C -0.150 4.150 7 C -0.192 4.192 8 H 0.133 0.867 9 C 0.542 3.458 10 O -0.547 6.547 11 N -0.577 5.577 12 C 0.212 3.788 13 C -0.521 4.521 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.171 3.829 22 C -0.152 4.152 23 C -0.182 4.182 24 C -0.139 4.139 25 C -0.151 4.151 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.136 1.582 -0.060 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.148 4.148 5 H 0.133 0.867 6 C -0.188 4.188 7 C -0.212 4.212 8 H 0.150 0.850 9 C 0.329 3.671 10 O -0.425 6.425 11 N -0.308 5.308 12 C 0.091 3.909 13 C -0.560 4.560 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.699 3.301 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.191 1.191 21 C 0.085 3.915 22 C -0.210 4.210 23 C -0.239 4.239 24 C -0.177 4.177 25 C -0.208 4.208 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.640 1.066 0.161 18.671 hybrid contribution 0.571 0.217 0.806 1.011 sum -18.069 1.283 0.967 18.140 Atomic orbital electron populations 1.21781 0.96123 1.01424 1.01633 1.21502 0.95333 0.96804 1.02360 1.21209 0.92442 0.97014 1.01804 1.22494 0.94061 0.96533 1.01721 0.86723 1.23092 1.02992 1.02468 0.90225 1.22942 0.98919 0.97621 1.01721 0.85004 1.19296 0.84432 0.83566 0.79803 1.90636 1.66917 1.33380 1.51566 1.47873 1.19207 1.04138 1.59540 1.19715 0.79414 0.97348 0.94383 1.21326 0.89565 1.50548 0.94520 0.90768 1.24836 0.96380 0.94657 0.97089 1.69896 1.00376 1.50741 1.32718 0.86907 0.78148 0.78878 0.86129 1.20004 1.21163 1.19069 1.20285 0.92097 0.85591 0.93542 1.22135 1.00456 0.95307 1.03057 1.22758 1.03193 1.02346 0.95642 1.22214 0.97556 1.01798 0.96170 1.21764 1.00806 1.02745 0.95478 0.92915 0.92842 0.92883 0.91833 0.91841 0.91707 0.91882 0.88213 0.88357 0.94706 0.94911 0.92668 0.89592 0.92758 0.91987 0.90342 0.92490 0.91418 0.91323 0.91403 0.93400 0.92266 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.17 5.89 -26.73 -0.16 -1.33 16 3 C -0.09 -0.91 5.50 -26.73 -0.15 -1.06 16 4 C -0.13 -1.78 5.25 -90.58 -0.48 -2.26 16 5 H 0.11 1.83 7.61 -51.93 -0.40 1.44 16 6 C -0.15 -2.10 9.10 -26.73 -0.24 -2.34 16 7 C -0.19 -2.95 3.01 -91.73 -0.28 -3.23 16 8 H 0.13 1.75 3.67 -51.93 -0.19 1.56 16 9 C 0.54 11.29 6.98 -10.99 -0.08 11.22 16 10 O -0.55 -13.73 15.82 5.56 0.09 -13.64 16 11 N -0.58 -11.86 1.49 -160.19 -0.24 -12.10 16 12 C 0.21 5.17 3.66 -5.19 -0.02 5.15 16 13 C -0.52 -14.75 8.98 -34.44 -0.31 -15.05 16 14 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 17 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 18 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.17 2.77 0.73 -131.83 -0.10 2.68 16 22 C -0.15 -2.52 7.06 37.15 0.26 -2.26 16 23 C -0.18 -2.68 8.16 37.15 0.30 -2.37 16 24 C -0.14 -1.84 4.73 -26.74 -0.13 -1.97 16 25 C -0.15 -2.09 9.44 37.16 0.35 -1.74 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.59 7.88 -51.92 -0.41 0.18 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.04 0.81 4.88 -51.93 -0.25 0.56 16 36 H 0.03 0.88 6.77 -51.93 -0.35 0.52 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.09 1.69 7.07 -51.93 -0.37 1.33 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.04 5.07 -51.93 -0.26 0.78 16 41 H 0.08 1.07 3.33 -51.93 -0.17 0.90 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.86 5.05 -51.93 -0.26 0.59 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.97 7.51 -51.93 -0.39 0.58 16 48 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -32.41 360.81 -7.82 -40.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.47 Total: 3.30 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.74 Total: -13.43 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.54 Total: -38.92 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.41 -7.82 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362171586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.533 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds